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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR000169
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 62 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 7.182s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0055079.1
n.a. PREDICTED: cathepsin B-like [Glycine max] gi|356572872|ref|XP_003554589.1| chr0 17728277 17733704 +
2 domain predictions
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Lj0g3v0101249.1
n.a. Senescence-associated gene 12 [Theobroma cacao] gi|508702326|gb|EOX94222.1| chr0 42921000 42924125 +
2 domain predictions
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Lj0g3v0129549.1
n.a. Calpain-like protein [Medicago truncatula] gi|357519297|ref|XP_003629937.1| chr0 58630780 58633904 +
2 domain predictions
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Lj0g3v0162449.1
n.a. PREDICTED: LOW QUALITY PROTEIN: xylem cysteine proteinase 1-like [Cicer arietinum] gi|502078248|ref|XP_004485885.1| chr0 76605876 76607494 +
2 domain predictions
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Lj0g3v0231969.1
n.a. PREDICTED: KDEL-tailed cysteine endopeptidase CEP2-like [Cicer arietinum] gi|502143938|ref|XP_004505522.1| chr0 120379854 120381189 -
2 domain predictions
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Lj0g3v0259509.1
n.a. PREDICTED: cysteine proteinase 15A [Glycine max] gi|356564325|ref|XP_003550405.1| chr0 134891666 134894781 +
2 domain predictions
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Lj0g3v0287639.1
n.a. cysteine proteinase precursor [Glycine max] gi|351721126|ref|NP_001237199.1| chr0 149461775 149465973 +
2 domain predictions
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Lj0g3v0300659.1
n.a. cysteine proteinase [Lotus japonicus] gi|144905116|dbj|BAF56430.1| chr0 156241215 156242388 +
2 domain predictions
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Lj1g3v2126000.1
n.a. PREDICTED: cysteine proteinase RD21a-like [Glycine max] gi|356563584|ref|XP_003550041.1| chr1 25471394 25473788 -
2 domain predictions
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Lj1g3v2139680.1
n.a. PREDICTED: oryzain alpha chain-like [Cicer arietinum] gi|502131381|ref|XP_004500967.1| chr1 25694581 25697260 -
2 domain predictions
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Lj1g3v2140860.1
n.a. PREDICTED: cysteine proteinase RD19a-like [Glycine max] gi|356509908|ref|XP_003523684.1| chr1 25764771 25767284 +
2 domain predictions
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Lj1g3v3404280.1
n.a. PREDICTED: xylem cysteine proteinase 2-like [Glycine max] gi|356517188|ref|XP_003527271.1| chr1 39208042 39209908 +
2 domain predictions
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Lj1g3v4047190.1
n.a. cysteine proteinase [Lotus japonicus] gi|144905108|dbj|BAF56428.1| chr1 47739823 47741197 -
2 domain predictions
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Lj1g3v4047240.1
n.a. cysteine proteinase [Lotus japonicus] gi|144905116|dbj|BAF56430.1| chr1 47761044 47762165 -
2 domain predictions
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Lj1g3v4047250.1
n.a. cysteine proteinase [Lotus japonicus] gi|144905108|dbj|BAF56428.1| chr1 47764683 47766120 -
2 domain predictions
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Lj1g3v4047270.1
n.a. cysteine proteinase [Lotus japonicus] gi|144905108|dbj|BAF56428.1| chr1 47769409 47770624 -
2 domain predictions
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Lj1g3v4047290.1
n.a. cysteine proteinase [Lotus japonicus] gi|144905116|dbj|BAF56430.1| chr1 47773952 47775075 -
2 domain predictions
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Lj1g3v4819970.1
n.a. PREDICTED: cathepsin B-like [Glycine max] gi|356505709|ref|XP_003521632.1| chr1 58150447 58154358 +
2 domain predictions
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Lj3g3v0129310.1
n.a. CM0216.510.nc [Lotus japonicus] gi|164605519|dbj|BAF98585.1| chr3 977264 979016 +
2 domain predictions
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Lj3g3v0129320.1
n.a. CM0216.500.nc [Lotus japonicus] gi|164605518|dbj|BAF98584.1| chr3 983337 984924 +
2 domain predictions
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Lj3g3v1641950.1
n.a. cysteine proteinase [Lotus japonicus] gi|409190991|gb|AFV30165.1| chr3 20904157 20905269 +
2 domain predictions
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Lj3g3v1642060.1
n.a. cysteine proteinase [Lotus japonicus] gi|144905104|dbj|BAF56427.1| chr3 20939116 20940233 +
2 domain predictions
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Lj4g3v1399950.1
n.a. PREDICTED: vignain-like [Glycine max] gi|356563155|ref|XP_003549830.1| chr4 22045501 22047303 -
2 domain predictions
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Lj5g3v0294860.1
n.a. PREDICTED: cysteine proteinase RD21a-like [Cicer arietinum] gi|502125689|ref|XP_004499026.1| chr5 2628473 2632929 +
2 domain predictions
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Lj5g3v2133770.1
n.a. PREDICTED: cysteine proteinase RD21a-like isoform X1 [Cicer arietinum] gi|502120445|ref|XP_004496965.1| chr5 30633092 30635902 -
2 domain predictions
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Lj6g3v1995740.2
n.a. Cysteine proteinase [Medicago truncatula] gi|357446993|ref|XP_003593772.1| chr6 23120617 23122406 -
2 domain predictions
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Lj6g3v1995750.1
n.a. Cysteine proteinase [Medicago truncatula] gi|357446993|ref|XP_003593772.1| chr6 23123100 23124553 -
2 domain predictions
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Lj6g3v1995800.1
n.a. PREDICTED: LOW QUALITY PROTEIN: xylem cysteine proteinase 1-like [Cicer arietinum] gi|502078248|ref|XP_004485885.1| chr6 23148043 23149866 -
2 domain predictions
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LotjaGi1g1v0230500.1
n.a. Cysteine proteinase; TAIR: AT5G50260.1 Cysteine proteinases superfamily protein; Swiss-Prot: sp|P25803|CYSEP_PHAVU Vignain; TrEMBL-Plants: tr|I1KC88|I1KC88_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0230500 LjG1.1_chr1 53964568 53970290 +
2 domain predictions
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LotjaGi1g1v0423400.1
n.a. Cysteine protease family protein; TAIR: AT1G09850.1 xylem bark cysteine peptidase 3; Swiss-Prot: sp|Q9LT78|RD21C_ARATH Probable cysteine protease RD21C; TrEMBL-Plants: tr|A0A1J7IIQ9|A0A1J7IIQ9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0423400 LjG1.1_chr1 91757413 91763963 -
2 domain predictions
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LotjaGi1g1v0424400.1
n.a. Cysteine proteinase; TAIR: AT4G39090.1 Papain family cysteine protease; Swiss-Prot: sp|P25804|CYSP_PEA Cysteine proteinase 15A; TrEMBL-Plants: tr|A0A151RQM7|A0A151RQM7_CAJCA Cysteine proteinase RD19a; Found in the gene: LotjaGi1g1v0424400 LjG1.1_chr1 91892437 91895727 +
2 domain predictions
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LotjaGi1g1v0569300.1
n.a. Cysteine proteinase; TAIR: AT4G35350.1 xylem cysteine peptidase 1; Swiss-Prot: sp|O65493|XCP1_ARATH Cysteine protease XCP1; TrEMBL-Plants: tr|I1K796|I1K796_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0569300 LjG1.1_chr1 110228376 110230421 +
2 domain predictions
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LotjaGi1g1v0753100.1
n.a. Cathepsin B-like cysteine protease; TAIR: AT1G02305.1 Cysteine proteinases superfamily protein; Swiss-Prot: sp|P07858|CATB_HUMAN Cathepsin B; TrEMBL-Plants: tr|I3SCV5|I3SCV5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0753100 LjG1.1_chr1 132587552 132595445 +
2 domain predictions
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LotjaGi1g1v0753100.2
n.a. Cathepsin B-like cysteine protease; TAIR: AT1G02305.1 Cysteine proteinases superfamily protein; Swiss-Prot: sp|Q4R5M2|CATB_MACFA Cathepsin B; TrEMBL-Plants: tr|I3SCV5|I3SCV5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0753100 LjG1.1_chr1 132587552 132595445 +
2 domain predictions
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LotjaGi1g1v0753100.3
n.a. Cathepsin B-like cysteine protease; TAIR: AT1G02305.1 Cysteine proteinases superfamily protein; Swiss-Prot: sp|Q4R5M2|CATB_MACFA Cathepsin B; TrEMBL-Plants: tr|I3SCV5|I3SCV5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0753100 LjG1.1_chr1 132587786 132591689 +
2 domain predictions
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LotjaGi1g1v0753100.4
n.a. Cathepsin B-like cysteine protease; TAIR: AT1G02305.1 Cysteine proteinases superfamily protein; Swiss-Prot: sp|P07858|CATB_HUMAN Cathepsin B; TrEMBL-Plants: tr|I3SCV5|I3SCV5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0753100 LjG1.1_chr1 132587843 132591886 +
2 domain predictions
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LotjaGi3g1v0245200.1
n.a. Cysteine protease; TAIR: AT1G06260.1 Cysteine proteinases superfamily protein; Swiss-Prot: sp|Q9FJ47|SAG12_ARATH Senescence-specific cysteine protease SAG12; TrEMBL-Plants: tr|A0A1J7H619|A0A1J7H619_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0245200 LjG1.1_chr3 40114770 40118851 -
2 domain predictions
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LotjaGi3g1v0245300.1
n.a. Cysteine protease; TAIR: AT1G06260.1 Cysteine proteinases superfamily protein; Swiss-Prot: sp|Q9FJ47|SAG12_ARATH Senescence-specific cysteine protease SAG12; TrEMBL-Plants: tr|G8A001|G8A001_MEDTR Papain family cysteine protease; Found in the gene: LotjaGi3g1v0245300 LjG1.1_chr3 40120112 40121888 -
2 domain predictions
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LotjaGi3g1v0248000.1
n.a. Cysteine protease; TAIR: AT5G45890.1 senescence-associated gene 12; Swiss-Prot: sp|A2XQE8|SAG39_ORYSI Senescence-specific cysteine protease SAG39; TrEMBL-Plants: tr|K7K0Y1|K7K0Y1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0248000 LjG1.1_chr3 40948841 40949961 -
2 domain predictions
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LotjaGi3g1v0249300.1
n.a. Cysteine protease, putative; TAIR: AT5G45890.1 senescence-associated gene 12; Swiss-Prot: sp|A2XQE8|SAG39_ORYSI Senescence-specific cysteine protease SAG39; TrEMBL-Plants: tr|K4MQ82|K4MQ82_LOTJA Cysteine proteinase; Found in the gene: LotjaGi3g1v0249300 LjG1.1_chr3 41404768 41405940 +
2 domain predictions
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LotjaGi3g1v0254300.1
n.a. Cysteine protease, putative; TAIR: AT5G45890.1 senescence-associated gene 12; Swiss-Prot: sp|A2XQE8|SAG39_ORYSI Senescence-specific cysteine protease SAG39; TrEMBL-Plants: tr|A4PIZ3|A4PIZ3_LOTJA Cysteine proteinase; Found in the gene: LotjaGi3g1v0254300 LjG1.1_chr3 43160081 43161221 -
2 domain predictions
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LotjaGi3g1v0489300.1
n.a. Cysteine protease; TAIR: AT5G45890.1 senescence-associated gene 12; Swiss-Prot: sp|A2XQE8|SAG39_ORYSI Senescence-specific cysteine protease SAG39; TrEMBL-Plants: tr|A4PIZ2|A4PIZ2_LOTJA Cysteine proteinase; Found in the gene: LotjaGi3g1v0489300 LjG1.1_chr3 90722326 90723451 +
2 domain predictions
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LotjaGi3g1v0489400.1
n.a. Cysteine protease, putative; TAIR: AT5G45890.1 senescence-associated gene 12; Swiss-Prot: sp|A2XQE8|SAG39_ORYSI Senescence-specific cysteine protease SAG39; TrEMBL-Plants: tr|A4PIZ2|A4PIZ2_LOTJA Cysteine proteinase; Found in the gene: LotjaGi3g1v0489400 LjG1.1_chr3 90726812 90728421 +
2 domain predictions
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LotjaGi3g1v0508700.1
n.a. Cysteine proteinase; TAIR: AT4G39090.1 Papain family cysteine protease; Swiss-Prot: sp|P43296|RD19A_ARATH Cysteine protease RD19A; TrEMBL-Plants: tr|B0BL96|B0BL96_LOTJA CM0216.510.nc protein; Found in the gene: LotjaGi3g1v0508700 LjG1.1_chr3 92584990 92587220 -
2 domain predictions
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LotjaGi3g1v0512500.1
n.a. Cysteine proteinase; TAIR: AT4G39090.1 Papain family cysteine protease; Swiss-Prot: sp|P43296|RD19A_ARATH Cysteine protease RD19A; TrEMBL-Plants: tr|Q70I35|Q70I35_LOTJA Papain-like cysteine proteinase-like protein 2; Found in the gene: LotjaGi3g1v0512500 LjG1.1_chr3 92941463 92943460 +
2 domain predictions
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LotjaGi3g1v0512700.1
n.a. Cysteine proteinase; TAIR: AT4G39090.1 Papain family cysteine protease; Swiss-Prot: sp|P43296|RD19A_ARATH Cysteine protease RD19A; TrEMBL-Plants: tr|B0BL95|B0BL95_LOTJA CM0216.500.nc protein; Found in the gene: LotjaGi3g1v0512700 LjG1.1_chr3 92947665 92949409 +
2 domain predictions
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LotjaGi4g1v0101100.1
n.a. Cysteine protease; TAIR: AT1G47128.1 Granulin repeat cysteine protease family protein; Swiss-Prot: sp|P43297|RD21A_ARATH Cysteine proteinase RD21A; TrEMBL-Plants: tr|I1K268|I1K268_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0101100 LjG1.1_chr4 13861458 13864891 -
2 domain predictions
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LotjaGi4g1v0226100.1
n.a. Cysteine protease, putative; TAIR: AT5G50260.1 Cysteine proteinases superfamily protein; Swiss-Prot: sp|P25803|CYSEP_PHAVU Vignain; TrEMBL-Plants: tr|A0A072UQV2|A0A072UQV2_MEDTR KDEL-tailed cysteine endopeptidase CEP1; Found in the gene: LotjaGi4g1v0226100 LjG1.1_chr4 53533480 53535830 -
2 domain predictions
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LotjaGi4g1v0240000_LC.17
n.a. Calpain, putative; TAIR: AT1G55350.1 calpain-type cysteine protease family; Swiss-Prot: sp|Q8RVL2|DEK1_ARATH Calpain-type cysteine protease DEK1; TrEMBL-Plants: tr|A0A151UC24|A0A151UC24_CAJCA Calpain-9; Found in the gene: LotjaGi4g1v0240000_LC LjG1.1_chr4 55851931 55875754 -
2 domain predictions
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LotjaGi4g1v0240000_LC.19
n.a. Calpain, putative; TAIR: AT1G55350.1 calpain-type cysteine protease family; Swiss-Prot: sp|Q8RVL2|DEK1_ARATH Calpain-type cysteine protease DEK1; TrEMBL-Plants: tr|A0A151UC24|A0A151UC24_CAJCA Calpain-9; Found in the gene: LotjaGi4g1v0240000_LC LjG1.1_chr4 55851931 55876093 -
2 domain predictions
 –