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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0759100 |
| Transcript ID | LotjaGi1g1v0759100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | HIT zinc finger,PAPA-1-like conserved region, putative; TAIR: AT2G47350.1 HIT zinc finger and PAPA-1-like domain-containing protein; Swiss-Prot: sp|Q99PT3|IN80B_MOUSE INO80 complex subunit B; TrEMBL-Plants: tr|K7KGE4|K7KGE4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0759100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:133240199..133246233) extracted from Lotus japonicus Gifu genome v1.2.
GAAAAAATAAAACATTTGTAATGTAACGTTTTGAATTTTGACGCATGCTCTTTTATGAGTGTTTATCTGTCTTCCAAACA TGGCTCTCTCAGAAGATTCATCAGCAGATGAACCAACACCTATTCTATTCTATTCTATTTGCTTCTATTCCCCAAACTCC TCTCCATTCACATCACCATCATCGGCAAACCCTCGCCGCCGCAGACGCCACCACTTTCATTCTCCGACCACCCACCCTCA ACTCAATTTCAACACCGTTGATCCGACCCGAATGGACTCTGCCCGGTAGCACGGAGACAAAATAATTGTGCAAACTGTGA GCCCTTTGCCCTAATTCTTCTAAATTTCACTCAATCTTTGCTTTCTATGTGTTTCTTTTGCTTCTTACTCTTCTAATCAC TGTTCAAGTTTCAAAAAAATTGTTCAGGAATTTCAATTTCTTCCGTATCGGTGTAACGCGGTACACAAATGCCGCTTCCT TCTGAACTTCATTCAATTCAAAACCATGCTATGAGAATGAAAATTCATGAAAAAATTGAACTGTGAATTACACTGCCTTA ATTGTTCAATTCCCTTTTCCCCTCCTTAAATAGAAGAAGAAGAAGAAGGAAGCAGTTACAGTTAGGTTAATTTTAGGGAT GATTAATGTGATTGATTGCTGATGGTTTAATTTATCTCATTTGCAGCGGGAAAAATATTGCTATATGAGGGTTTTCCCTC ACCAGTAGTTGAAGGGGTGCCGGAAACCCGGCCTGTTGTGTAAAATAAGCATTTAATGGATGATTTAGGCTCTACTACCG GTTTTGATGGTCTCAGCAATGCTGTGAGGAGGAAGAGGAGTCAAACTTCGCGCAGGCCTCGACCTGATTCACAGCCTGTT TCTGAAGGTCATGAACTGTCTCCCTTGTCGTCGACGCCTTCAGAAGATGCCGGCAAGGCCTCTAGTGACGAAAATGCTGT TTACGATACTAGTTCCAAGAGGAAAGAATTCAATCTTAACTCTCATGCCTCCTCTGCTACCAGAGCCGACGACGATAAAT CACATAGAAGAGGTTTCCATGCTTTTTATAATAGTGAGCCTGGACGGAGCGGTTCATTTAATAGACGCAGTAGTGAAGGT GTTCTTGCTCCAGCTAATTGGAAAGGTTCTAGCAAATTCAAGGATAGCTTGGATTCAGAGCTAAGCAATGCAGATGTTTA TGGTGGGAGGAGTTTCGAGGGTCCGAGTCTGGGGCAGTTTGGCATTTCTCAGGATGGATTGGGGAATGAGAACAGGGTTA AGAAGGTTAAACTGAAGGTTGGCGGGGTGACGCGTACTATACAAGCCAACTCTGCATCCAATGGTGGTTCAGGAAGTGGA TCAGCTACAAAAAGCTCTCGCTCATCAGATGCGCCGAGGCCACGCCAAAAGCAACAGGTATTTTTGCTTAGGATGTAACG GTAGTTTATACCAGAATTTCTGAGCATCTTATTCCTCAGCATTTATAATTATTCAGTATGTCAAAGACAAGGTTTATCAA ATCAAGATTCATTGTAAATCAGAAAACTTATTCTCCGAATCATGAATCGAATCTTTTTATGTATCATAAGATATATATAT ATATATATATATATATATATATATCAATAATTAAAACTAACTAAATATATTTTTCACATAAAGGAACATTGAAAACATAA AGTTATTAGCATTTTAAAGTCAAACAATTAAACAACTCATTGCGTAAACTTGTACATAAGCCATGTATGAACTTCAAGTA ATTGAAGATCAAACCCATAATTCAAGATGACAAAAAACAGTGGCTGGACCCCTGACAAAACATCAATAACTATAAGATAT ATCGAAGATCCAAAATTTCGTAAGACATCATTGCTTGCAACTACGAGTCAATGTTGTCAAATCGCGGGTATCGCGGCGCT ATAGTGTAGCGCTTTGAGGGCTCACTGCTATCTGCTATTTTCCGCTCTAGGGCTTGACATAGCGGATTTTTGGCTTTCCG TGATCCACGATTAACAGCACTGCCACAAGCCCATATTTGCTCTAAGATCTTTGCTCAAGCCACAAGTCTTTGTTCTACTG TGCCTAGACAGTCAAAGAACCATACCACAGAGTTGAGTGCTCCATTATCAATTTCAAATTGCAACAGTCTCCATATGAAG TCTTTTGTTGTTAGCATCACACTTGTCTGCTATTGTCATTGTGTTGGCTACCATGCTGTCTCATTTGTTGCTACTATCAG CCTATCACACTTTGCCACTTCACATTAAGTGATGTTGGGCCATCATTATCATGCCGATTGCCGAATCATCGTTTCAATTT TGTAGAGAAGTGCAAAAAGGAAAAGAAAAATAGAGCCTAAAAGTGTTGTTTCAGAACCGGGTTGCACAACGCCAACCTGT TTCTATGTGAGCAACCTGTGCATGCTGGAATCGCTGGATTCCACTATGTATCTCGATTCGTCTGATACAGAGGCGATTCA TACAATTCAGGTTGTGATTCACACGATTCAGGTTGCAATTGAAGGTCCAAAGCATACTCAATCTGATCTGTATCGATGTT TATTGATTTGGTACCAAATCTCTATGTGGATATTACATTCTTGCGACTCTAAGTACAATGGTTAAAAGATATAAAACCAT CCAGTGTTTTTACCTAAAAGCTGAAACTGTTAGTACAGTTAATCTTGGACGAGTTGACGTATTATTAGAGCTTTTATGCG CAAGTAGTGACATATTTGGTCCATGTTGGCCCAATCTTTGTAATTATTAAATTTTAACATAAAAAAGCTGGCACGGACAA TGTCCAGGCTTCAAGCCCAAAGAGCTCTCTTGCGCGATCATTCAAGTACTTCCACAGTCCAGCTAAAACTTAGCCGGTCC TTGATTTACCTTACATGAATATTGGTTGTAGGATATTTGCTTTTTATAATTAATTATTACTTGCTATTTTATAAAATGTC ATTTCACGAGATTCGTGAGGCGTTTCTTATCCGACCAGTCCGCGATGACCGTATGCGTATTTAGGTTTTACTCGTATGGA ATAATATCTCTGGTCTTGATTTTATATCTATAAAGGTAATCATTTCCCCTTCTTTTTTATCTGGTCGAATTCCATTTGAT TATTCTCATCAAATTGTGCTATTACAGAGTAATTCAGACGACAATAATTCTCCTTCTGATAAGAGGAGTGGCCTCCAAGG CCTTCCGTGGAAGGATTTTTCAAGGGGTGGCTTTGGTCTTGGGAAGGAGGATTCAATGGGGAGGATATCTGGAAAGAACA CATCTGGTAAGCAAGGAGACAAGTCTGAACCAGTTCGGAAGAGCAAGCGAGTGCCGAAGAGACGTGTGCTAGATGGGGAA TTTGGTGATGAAGACGACGAGGATGATGAGATTCGGTACTTGGAAAAGCTGAAAACTTCAAAAGTTTCTGCAGTTTACAG AGATGAAGAAGAATTAAGCAAGAAACATCGAAAACTCTCCAGTGTCTCTAATATGGAAAATGCTGCCTCATCAAGGTCAG GCAAAGATGGTAAGAAAAGGTCTAGATCTGATAGAGTGTATGAGGATACAGATTATGAGGGTGAAGAGGAATCAGGGTCT GATGGTGAGCTTGAGGATAAGAAAAAGAAAAAACAGAAGAAGGAATCTGTTGATGTATTAATGGACAGTAAGAGGGAAAT GACTCTTACAACACGTCAACGGGCTCTTCAATCAAGCAGAGATGCTTGTGCAACTGGTGGAAGTCTAATTGAGTTTCCCA ATGGATTACCACCTGCTCCGTCTAGAAGTGAGCATTTATCTACACTTTATTTTCTTTTATCAATTTCATATTAGAGTCAT AAACCATGTACATGTTGCTTAATTGCAGAGCAAAAGGAGAAGCTTTCCGAAGTGGATCAGCAAGTAAAGAAAGCTGAGGC TGCACAGAGGCGTAAAATGCAGGTTGAAAAGGCTGCCAGGGAATCTGAGGTTTGTTTATGTTCTCTACAAATCATATTTT TTTCTCTGCATTATGTTTGATTTTACACAGAAAGGCATGTCCATTTGAATTCGAATTCATTTTGCAGGCTGAAGCTATCC GAAAAATTCTTGGTCAAGACTCCAGTAGGAAGAAGCGAGAAGATAAAATTAAGAAACGCCAAGAAGAACTGGCACAGGTT TTGCAACATTAGATGAATTTCCTACAAATTACTAATTTCAATTTTTTTTACAACTTTCAGTTTTAATTGAATTATTCTTT GCAGGAGAAGGCAGCCAATGCTCAAAAACTTCCACCAAATACCATCAGATATGTGATGCGTCCTACTGGGACAACTTTGA CTTTCCCTGAGGAGATGGGGCTCCCTGCTATTTTTAACTCCAAGCCAATCAGGTATCAGGCTATACTAATTTGATTATAT GACCTCTTAAACTTGATGCCTTATAACTTGTTTAGATAATTTTGGCAAATAGAACGATGGAAAAAGAAAAGCGGAGAATG AAAGTTGATTGAAAAGTTGTGTTATTTACCAGAACTGAAATCTTAGTGTTTTTGGCTTTGGCTTTAGCTGTACCTTTAGC TTTTTCCATAATCTTGACAACTGCCCCTCTCCACAAGATAGATACTGATGCTTGTATTGGACTTTATTAATTTGATTTTT AGGACCTGTTAGACTGTCCTCCTGAGAATTTTTTCACACATGTTTGGAAACAAAACTAAGGAGGCAAAAAATTGATATTG AATAACTGTGCTATTTACTTGAAAAGAAATCTGGGTGAGTAGCTTTAGGTGTTCCCTGATTTTGACTAGAAGGATTGATC AGTTGTTAGAAATTCTGATGTTTGTTTGGTAAACACATCAAAGCTTTCTTTCACTGCTAATGATATCACTGGTTATTCTT TCAGTTATCCTCCCCCTCGTGAGAAGTGTGCTGGTCCTTCTTGTACGAATCCGTACAAGTATCGGGATTCGAAAACGAAG GTTCCTCTTTGCAGTCTCCAATGCTATAAGGCTGTCCAGGGGAAGACGGCAGATGAGATTGTCCAGGAGAAGATGGCAGC TGAGGCTGTACAGGAGAAGACGGAAGCTGAGGCTGTACAGGAGAAAACGGCAGCTGAGGCTGTACAGGAGATGACGGCAG CTGAGCTTGTACAGGAGAAGACGGCAGCTGCGCCTGAAACTATGTCTTGATGTTCTGAATGCTCCTCTATTGCTGGCTTC TGCCAATTATGTGGTACCATTTTCATCTTTGATGGAGAAAAGCGTTTGGGAGAGAGATCATATTGCGGATTGTTCATTAA CTCTTATCATCTTTTGTTGTTATCATTGTTAGTTTTTTATTTATTTTAAACATGCTGGTATAAGAGGTTTTGTGACAATG GTATCTAGTTATTTCCCTGGCATTTTGGCAAGTAAACTTGCAATAGGGAAAACTGAAGGAACTTCAGGTAGTGTTGTTAT TTTACTTCGATGTTACCAGTGTTTCTCTGTCAGTATCACTGGCTTATGCTAGTTATAGGCGCCATCTATGATCTATGTTT CTATAGTGGCTTTAGGATAGAGCGATGATGTCTTGATAGGTCAGGTTTCACTGTTTCAGATTGCTCATTTGCATAATCAC TCTTTCCAATATACAAAAGTGAATGGAACTCTTTTATTGGATTGAGAAAAAAAGCACTTTCACTGAGTGTAACTTCTGTC TTTAAACACAAACCTAGAATGAGATGAAAATGTCCTTCCTTCACAACTGTGATTTAGAGTTTTTGTTACTCATGCACTGC TTTCCTAACTTTGCATATGCCTCTTCAACTTTTAACCGCTTTCTCATGTTTTTCTCCTCAAACAATAGTGTGGAGGTGGA AATAATAACTTCAGTATGGTCAATCTCTTGTTTCTTTGTGTTGGGGCTACTTTGTCCGACCAAGTGTGGATCAGGAACCG ATTTGGGCTTTCTCCAATCGAATGAGGCTGTGTCTGGTACTTAGTTTCTTGTTTGAGGCGTAGCCCCTTCCTCTAAAAAA AAATCACGGAGAAAACACTTACAAATACAAATGCT
CDS sequence (LotjaGi1g1v0759100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGATTTAGGCTCTACTACCGGTTTTGATGGTCTCAGCAATGCTGTGAGGAGGAAGAGGAGTCAAACTTCGCGCAG GCCTCGACCTGATTCACAGCCTGTTTCTGAAGGTCATGAACTGTCTCCCTTGTCGTCGACGCCTTCAGAAGATGCCGGCA AGGCCTCTAGTGACGAAAATGCTGTTTACGATACTAGTTCCAAGAGGAAAGAATTCAATCTTAACTCTCATGCCTCCTCT GCTACCAGAGCCGACGACGATAAATCACATAGAAGAGGTTTCCATGCTTTTTATAATAGTGAGCCTGGACGGAGCGGTTC ATTTAATAGACGCAGTAGTGAAGGTGTTCTTGCTCCAGCTAATTGGAAAGGTTCTAGCAAATTCAAGGATAGCTTGGATT CAGAGCTAAGCAATGCAGATGTTTATGGTGGGAGGAGTTTCGAGGGTCCGAGTCTGGGGCAGTTTGGCATTTCTCAGGAT GGATTGGGGAATGAGAACAGGGTTAAGAAGGTTAAACTGAAGGTTGGCGGGGTGACGCGTACTATACAAGCCAACTCTGC ATCCAATGGTGGTTCAGGAAGTGGATCAGCTACAAAAAGCTCTCGCTCATCAGATGCGCCGAGGCCACGCCAAAAGCAAC AGAGTAATTCAGACGACAATAATTCTCCTTCTGATAAGAGGAGTGGCCTCCAAGGCCTTCCGTGGAAGGATTTTTCAAGG GGTGGCTTTGGTCTTGGGAAGGAGGATTCAATGGGGAGGATATCTGGAAAGAACACATCTGGTAAGCAAGGAGACAAGTC TGAACCAGTTCGGAAGAGCAAGCGAGTGCCGAAGAGACGTGTGCTAGATGGGGAATTTGGTGATGAAGACGACGAGGATG ATGAGATTCGGTACTTGGAAAAGCTGAAAACTTCAAAAGTTTCTGCAGTTTACAGAGATGAAGAAGAATTAAGCAAGAAA CATCGAAAACTCTCCAGTGTCTCTAATATGGAAAATGCTGCCTCATCAAGGTCAGGCAAAGATGGTAAGAAAAGGTCTAG ATCTGATAGAGTGTATGAGGATACAGATTATGAGGGTGAAGAGGAATCAGGGTCTGATGGTGAGCTTGAGGATAAGAAAA AGAAAAAACAGAAGAAGGAATCTGTTGATGTATTAATGGACAGTAAGAGGGAAATGACTCTTACAACACGTCAACGGGCT CTTCAATCAAGCAGAGATGCTTGTGCAACTGGTGGAAGTCTAATTGAGTTTCCCAATGGATTACCACCTGCTCCGTCTAG AAAGCAAAAGGAGAAGCTTTCCGAAGTGGATCAGCAAGTAAAGAAAGCTGAGGCTGCACAGAGGCGTAAAATGCAGGTTG AAAAGGCTGCCAGGGAATCTGAGGCTGAAGCTATCCGAAAAATTCTTGGTCAAGACTCCAGTAGGAAGAAGCGAGAAGAT AAAATTAAGAAACGCCAAGAAGAACTGGCACAGGAGAAGGCAGCCAATGCTCAAAAACTTCCACCAAATACCATCAGATA TGTGATGCGTCCTACTGGGACAACTTTGACTTTCCCTGAGGAGATGGGGCTCCCTGCTATTTTTAACTCCAAGCCAATCA GTTATCCTCCCCCTCGTGAGAAGTGTGCTGGTCCTTCTTGTACGAATCCGTACAAGTATCGGGATTCGAAAACGAAGGTT CCTCTTTGCAGTCTCCAATGCTATAAGGCTGTCCAGGGGAAGACGGCAGATGAGATTGTCCAGGAGAAGATGGCAGCTGA GGCTGTACAGGAGAAGACGGAAGCTGAGGCTGTACAGGAGAAAACGGCAGCTGAGGCTGTACAGGAGATGACGGCAGCTG AGCTTGTACAGGAGAAGACGGCAGCTGCGCCTGAAACTATGTCTTGA
Protein sequence (LotjaGi1g1v0759100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDDLGSTTGFDGLSNAVRRKRSQTSRRPRPDSQPVSEGHELSPLSSTPSEDAGKASSDENAVYDTSSKRKEFNLNSHASS ATRADDDKSHRRGFHAFYNSEPGRSGSFNRRSSEGVLAPANWKGSSKFKDSLDSELSNADVYGGRSFEGPSLGQFGISQD GLGNENRVKKVKLKVGGVTRTIQANSASNGGSGSGSATKSSRSSDAPRPRQKQQSNSDDNNSPSDKRSGLQGLPWKDFSR GGFGLGKEDSMGRISGKNTSGKQGDKSEPVRKSKRVPKRRVLDGEFGDEDDEDDEIRYLEKLKTSKVSAVYRDEEELSKK HRKLSSVSNMENAASSRSGKDGKKRSRSDRVYEDTDYEGEEESGSDGELEDKKKKKQKKESVDVLMDSKREMTLTTRQRA LQSSRDACATGGSLIEFPNGLPPAPSRKQKEKLSEVDQQVKKAEAAQRRKMQVEKAARESEAEAIRKILGQDSSRKKRED KIKKRQEELAQEKAANAQKLPPNTIRYVMRPTGTTLTFPEEMGLPAIFNSKPISYPPPREKCAGPSCTNPYKYRDSKTKV PLCSLQCYKAVQGKTADEIVQEKMAAEAVQEKTEAEAVQEKTAAEAVQEMTAAELVQEKTAAAPETMS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 576 | 576 | 2.0E-214 | ||
| MobiDBLite | 1 | 19 | 19 | - | – | |
| PANTHER | 1 | 576 | 576 | 2.0E-214 | – | |
| MobiDBLite | 1 | 505 | 505 | - | – | |
| MobiDBLite | 38 | 80 | 43 | - | – | |
| MobiDBLite | 81 | 97 | 17 | - | – | |
| MobiDBLite | 179 | 228 | 50 | - | – | |
| MobiDBLite | 264 | 285 | 22 | - | – | |
| MobiDBLite | 296 | 326 | 31 | - | – | |
| MobiDBLite | 337 | 354 | 18 | - | – | |
| MobiDBLite | 366 | 394 | 29 | - | – | |
| MobiDBLite | 395 | 409 | 15 | - | – | |
| Coils | 426 | 463 | 38 | - | – | |
| MobiDBLite | 428 | 492 | 65 | - | – | |
| SMART | 437 | 522 | 86 | 2.4E-32 | ||
| Pfam | 438 | 522 | 85 | 3.4E-21 | ||
| Coils | 475 | 495 | 21 | - | – | |
| Pfam | 538 | 569 | 32 | 6.5E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Chromatin remodeling | Dynamic structural changes to eukaryotic chromatin occurring throughout the cell division cycle. These changes range from the local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation. | ||
| Cellular component | Ino80 complex | A multisubunit protein complex that contains the Ino80p ATPase; exhibits chromatin remodeling activity and 3' to 5' DNA helicase activity. |
Expression pattern of LotjaGi1g1v0759100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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