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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0775200 |
| Transcript ID | LotjaGi1g1v0775200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ring finger protein, putative; TAIR: AT3G05200.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q8RXX9|ATL6_ARATH E3 ubiquitin-protein ligase ATL6; TrEMBL-Plants: tr|Q2HTN3|Q2HTN3_MEDTR RING-H2 zinc finger protein; Found in the gene: LotjaGi1g1v0775200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:134731525..134733731) extracted from Lotus japonicus Gifu genome v1.2.
CCCATCTTCAACGGAAGCTTCCCAAGCTAGGAAACAAGCACTTATTGGAAGCACACCGTCTAAGACCATTTTCTTACATC ACTCCAATGTGGTCAAGTCCACATTCTCACACCCACACTCTTTCTTTCACAATCCCATTTAAAACCACCTCAATTTCTCT CCATTTTCCCCACACTCACTATTTTCTCTCTCTTTTCCTCTTCATTTTTTCTTCATCAATTACAACACAATGGAAAGAAA ATCTCAAACACTCTCCCTTCTCCTCCTCCTAATCTCGCCGTCGATCCCCCTCGCCGCCGCACAGTCCCCAAACACAAACC AAACCGTAGACCCCGATTTCAAAGAATTCAACCCTTCGTTTGCTATAATCATCGTCATACTCGTCGCTGCTCTCTTCCTC ATGGGCTTCTTCTCCATCTACATCCGTCAGTGCGCCGATTCAAACCCCAACAGCGTCCTCCCCATCACCCACGCGCGCTC CCGGAGGGTGGCGCGTGGCCTCGACCAAACCGTCATCGACACGTTCCCTGTCCTGGAATACTCCGAGGTCAAAGCACACA AGATCGGAAAGCACGCGCTCGAGTGCGCCGTTTGCTTGAGCGAATTCGAAGACGCTGAAACGCTGCGTTTGATCCCAAAG TGCGACCATGTTTTCCACACCGAGTGCATCGACGAGTGGCTGGTTTCTCACACCACCTGCCCCGTTTGCCGTGCGAATCT CTCCCCTCAACCCGCCGAGTCAGTTCACGGAGCCACCGTGCCGGAATCGCAAGACGACGTCGAGGCGCAAAACGACGCCG TTCCGGTCCAGTCCGATCTAGAGCAGCAAAACGTTGACGTTGACCGGGTATTACCGGAACCAGAGGTGATCTCAATAGGT AAAACCCTGAACCGGAACCGGACTAGAGGCTCCCGGTCGAACCGGCCTTGGCATTTCCCGCGTTCGCACTCGACCGGTCA TTCGCTGGTTCAACCAGGTGAGAACACGGAGCGGTTCACCTTGAGGCTCCCGGTTGGGGTGAGGAAGCAGATAATGGACC GGCAGTTGCAGCGTGCTAGTAGTTTGATTGTGTTACCTAGGGAAGGTAGCTCGAGAGTGGGTTACCGGACCGGCGGCAAT GGTAGCAGTAGGGGGAAGGCTTCGAGGCGGTTGGACCAGGGGTCTAAATCGGACCGGTGGGTTTTCTCAAAGGCTCCCTC GTTCTTGATGAGGGCATTGTCGATTAGATCCCCGCGGCCGAGGACGCGGAATAGCGACGATGAAGCGTCGTCCTCGGCCA CGCCTATCATGCCGCTGGGAGCCAGTGATTCCGCCCGCCCTCCTCCGGTTTAACTATTGTTTGAGCGATCTCAATAATTC GTTGTATTTTTTTTCTAAATTCTCTGAACGAGATTTTGTTTTTCCACTTCAAAATTTGTACATTTTGTATGATAAGGTGT TACGGTAGCAAAATTTATTTGGACCTGGTCTGACACGGGCGCGTCAATGTATAAGACACTTGGGCTGATCACTTTGTATA TCTAATGGGCCGGGCAACCCATGGTTCGTTTGGACCGAAACCCAAGTTATATAAAACAGGAACCACCCAAGCGGTGGGAG GCTATCATTTTCACGCATTTTTCATCTTGTTCGTTCCTTATCGCTCTCAATTGCTTAGCCCTTGCTTGATTTTCATTGGT CTATTTTACATTCCTTTCGTTCTAAATCGATTAGCCTAAGAGGATAGTTCCATACCGGAACATTGGCGCCCACCGTGGGG CCGAAGGATACTTTCCTAGGCTTCAGTTTTCACCGCGATGGTGACTCGATCCGGGGCGAACGGAGAGAGGAATCATGTTC AACAAAATGATGTTCCTCCCGATGCTCTTCAACGGATCATGGATGATCTCAATGAACTTCGTCAACATAATCAACAATTA CAAAATCAACTCACTGATCTCAATCAGACTCAGGGTTTACGAGAGGGCGATCGAAGAATGGCTGAGACGGTGGTGGACTT TCAACCTTTTACAGAAGAAATAGCGAATACCGCCGTCCCAGACAATTTGAAGACGTTAAAGCTTGATTCTTATTATGGTG ATTCAGACCCAAAAGATCATTTAGTGTATTTCAACACGAAAATGGTCATTGTAGGCGCATCAGATGCTTTGAAGTGCAAA ATGTTGCCATCAACTTTTAAAAAATCAGCGATGATTTGGTTTACCAC
CDS sequence (LotjaGi1g1v0775200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAAGAAAATCTCAAACACTCTCCCTTCTCCTCCTCCTAATCTCGCCGTCGATCCCCCTCGCCGCCGCACAGTCCCC AAACACAAACCAAACCGTAGACCCCGATTTCAAAGAATTCAACCCTTCGTTTGCTATAATCATCGTCATACTCGTCGCTG CTCTCTTCCTCATGGGCTTCTTCTCCATCTACATCCGTCAGTGCGCCGATTCAAACCCCAACAGCGTCCTCCCCATCACC CACGCGCGCTCCCGGAGGGTGGCGCGTGGCCTCGACCAAACCGTCATCGACACGTTCCCTGTCCTGGAATACTCCGAGGT CAAAGCACACAAGATCGGAAAGCACGCGCTCGAGTGCGCCGTTTGCTTGAGCGAATTCGAAGACGCTGAAACGCTGCGTT TGATCCCAAAGTGCGACCATGTTTTCCACACCGAGTGCATCGACGAGTGGCTGGTTTCTCACACCACCTGCCCCGTTTGC CGTGCGAATCTCTCCCCTCAACCCGCCGAGTCAGTTCACGGAGCCACCGTGCCGGAATCGCAAGACGACGTCGAGGCGCA AAACGACGCCGTTCCGGTCCAGTCCGATCTAGAGCAGCAAAACGTTGACGTTGACCGGGTATTACCGGAACCAGAGGTGA TCTCAATAGGTAAAACCCTGAACCGGAACCGGACTAGAGGCTCCCGGTCGAACCGGCCTTGGCATTTCCCGCGTTCGCAC TCGACCGGTCATTCGCTGGTTCAACCAGGTGAGAACACGGAGCGGTTCACCTTGAGGCTCCCGGTTGGGGTGAGGAAGCA GATAATGGACCGGCAGTTGCAGCGTGCTAGTAGTTTGATTGTGTTACCTAGGGAAGGTAGCTCGAGAGTGGGTTACCGGA CCGGCGGCAATGGTAGCAGTAGGGGGAAGGCTTCGAGGCGGTTGGACCAGGGGTCTAAATCGGACCGGTGGGTTTTCTCA AAGGCTCCCTCGTTCTTGATGAGGGCATTGTCGATTAGATCCCCGCGGCCGAGGACGCGGAATAGCGACGATGAAGCGTC GTCCTCGGCCACGCCTATCATGCCGCTGGGAGCCAGTGATTCCGCCCGCCCTCCTCCGGTTTAA
Protein sequence (LotjaGi1g1v0775200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MERKSQTLSLLLLLISPSIPLAAAQSPNTNQTVDPDFKEFNPSFAIIIVILVAALFLMGFFSIYIRQCADSNPNSVLPIT HARSRRVARGLDQTVIDTFPVLEYSEVKAHKIGKHALECAVCLSEFEDAETLRLIPKCDHVFHTECIDEWLVSHTTCPVC RANLSPQPAESVHGATVPESQDDVEAQNDAVPVQSDLEQQNVDVDRVLPEPEVISIGKTLNRNRTRGSRSNRPWHFPRSH STGHSLVQPGENTERFTLRLPVGVRKQIMDRQLQRASSLIVLPREGSSRVGYRTGGNGSSRGKASRRLDQGSKSDRWVFS KAPSFLMRALSIRSPRPRTRNSDDEASSSATPIMPLGASDSARPPPV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 24 | 24 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 23 | 23 | - | – | |
| Phobius | 1 | 6 | 6 | - | – | |
| Phobius | 1 | 24 | 24 | - | – | |
| SignalP_EUK | 1 | 24 | 24 | - | – | |
| PANTHER | 5 | 285 | 281 | 8.9E-127 | – | |
| PANTHER | 5 | 285 | 281 | 8.9E-127 | – | |
| Phobius | 7 | 15 | 9 | - | – | |
| TMHMM | 7 | 24 | 18 | - | – | |
| Phobius | 16 | 24 | 9 | - | – | |
| Phobius | 25 | 39 | 15 | - | – | |
| Phobius | 40 | 65 | 26 | - | – | |
| TMHMM | 44 | 66 | 23 | - | – | |
| Phobius | 66 | 367 | 302 | - | – | |
| Gene3D | 79 | 167 | 89 | 6.3E-21 | ||
| SUPERFAMILY | 118 | 167 | 50 | 9.66E-21 | – | |
| CDD | 118 | 161 | 44 | 3.81723E-20 | – | |
| Pfam | 118 | 161 | 44 | 7.0E-14 | ||
| ProSiteProfiles | 119 | 161 | 43 | 13.094 | ||
| SMART | 119 | 160 | 42 | 1.8E-6 | ||
| MobiDBLite | 217 | 252 | 36 | - | – | |
| MobiDBLite | 234 | 252 | 19 | - | – | |
| MobiDBLite | 288 | 314 | 27 | - | – | |
| MobiDBLite | 330 | 367 | 38 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0775200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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