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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0781900 |
| Transcript ID | LotjaGi1g1v0781900.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | SNF2 domain-containing protein / helicase domain-containing protein; TAIR: AT2G16390.2 SNF2 domain-containing protein / helicase domain-containing protein; Swiss-Prot: sp|Q9SIW2|CHR35_ARATH Protein CHROMATIN REMODELING 35; TrEMBL-Plants: tr|I1LVC4|I1LVC4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0781900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:135510875..135516615) extracted from Lotus japonicus Gifu genome v1.2.
CAAACATGCTTTCACTCTGAACCAACACTCTCACACACTCTCCCCCTTCCACACTCATCAAAATCCTGCCTTTTTCTCTT CTTCCTCCATTTCTGTCACGTAACTCTCTTCATCTCAATTTCAAGAAAAACATTCGATCTTTTTCTTTCCGTTTAATTTT TTTTTCAGTTTTCGCATAGTCAGTCATCAAATGGAGGCAGCAATTGATGTGTTACCACCTAAACGCCCTGCCTCAAGTGG TATTCTTCATTCCCTTCTCAAAAGTTTTTATCTTTTTCAATTCTTGGTTAATTATTTTCCTTAATGCTGATAATCAGGAA CATACCACTATCCCAGTGTATGTATTTTGTGTTTTGTTTTCACCTGCATGCATTTTTCGTCAATTGTTTTCTCAGTGTAA AGTTGTGTCCTTTTCACTTACTTAATTCTGTTTTTGATGATATAATGTAACTTTGTGGCATTCATTTGTATCTGTAATTT GTTTGCAACCCTTTTTGTTACTGAGTGTGCTTGTTACTGGGTTTGAGAATCAAATAAGTTTATTTTGTTTGAATGAAGTT GAAACTGCATTAGTCTATGTAGGATCATATTTAAGTCCAACTGAATTCTACAAGTCTTAAGAATATTTGCTTTTGCTGCT CTATAGGATGCATGCATTTAGTGGGTTATATGGATTATGGAATTGCTTAATTCAGTATACAACACTTGCAAGGGATATCT CTAGTTTTTGAATATAGTTTCTGTCATCTCTCCCATTAATAAATTTATCTATTTATTCATGTCTTTCCCCCAGCAAAAAA TACATTTATGGATGTTAGTATCATATAGAATATAGATAGATGTTGACAAACTTCATTTTCTGAAACCAGGAATTTCTCCT CAGGGACATAAAAGACTGAAACTATCTAGTGATAGTCTGCCATACTCAGCACATGATAAAGCTGTGCCAGAGGCACCTAC AAATGTTGAAGACTTCAGCAATCCATTTGCAATCTCTGATTTTTTAAATCGTTTAGAAAGTGGAAAATTTGGAAGTGTCA CAAAGGACATAGAGGCCCTTATAACCCGAAAAATGCAAGTACTGGGCCCTTTCTTTGCAAAGTTTCCTAAACTTGTTACT CAATCATTAAACGTGGTTGTGAACCACAATGAAGAAAGTAATAAGTTGGAAAATAAAAAAGGCACCATCATGTCACATGA TAAAGTAGTAGATTTGGAAGAGGAGCACACTAAGAAGGATGCTTCTGCAGCACAGCCTGTTGTGATTATTGATTCGGATG AGGAAGATGATAGAGACAAAAATTCTTCTCTTCCATTTAATGAAGTAATGTTTCCGAACTCACTCCAATCTCCTGCATTG AGGATGATGGTAAGTTCCCCTGGTTTTGTGATTCTTGAAATATGTGAGCTCTGTGAGCTTTTATTTGGATTAGTGGCATG TTTTCTCCTAGGATGATTTGAAGGAACTTTAGTATTTCATTTTAACACATGTGGCAGAAGATTGTAATTATATCATTGAC TCTTTCTTGATTTATTATTTGTCCCTTAATTGTTATTTTAAAAATATATTGCCCTTTTATTTTCATAAGTATAAAGCAGA ATCTTCTGGCTTTATAGGGTTAATTATGTAATTTTTATATCCATCGTCCATATATGACTCGTTCTATCTGTTTTAACTCT TTGAATTATTATGTGTGCCGTTACATATAACTTACCAACATACATCTTTGGCTTTATTCTGTAAAAATAGAGGTATTATT GCAGGGCCTAAATGTTGCTTTTAGCTGTTGCAGAAGGTTTCTCCATTGAACCATGTACATGTTTTAAGCTCTTTACACAA CATTTTTAATAATTACAGAGATCTAATCACCATTCTACAGAATTCTGAAAGTTATCTGATTTTTTTAACCACATTAAAGT TTCTTCTTTGTGTAAAAGGCTCATATGACTGAAATGCAGCATTAGAAAAAATTACTGTGTTGAAGAGTCAAGTGCAATTC TGAAGCATTCTAAATCCCTATCTATCTCAACACTGCATAGTTCTCTTAAAAATAAGTGCTTAATTTCTTGTGCCATGGCG TAATTCTATGTTAGATCTTTATAAGTTTCACCGAAGTCTGACATTTTGCCTCAAGCGTCCCAATTTTGTAATTGTTGGCT GTCTTGCTAAACTTAAATGTTTCTATACCATATAAAGTTTCCTGTACCTTTGGTGATAAGTTTGGTAGTCATGCAAATGA TGATACAAAAAATAAAAATCATGGACATATTTGGTTTCCTGTACCTTTGGTGATAAGTTTGGTAGTCATGCAAGTGGGTA TTAGTTTGGAATTTTCAATTTCTTTGTCAGAGCGTATTGTGTTAATATTCTTCATAGAGATTATCAGATATGTGTGTTTT GGTAGATTCCTTTGTAACATTCTGTATATTTGGATTGAAATTTGTTGCTATATTTCATGAGAAGATGCTGCCACGTCTTT CATGTTTCCTTTTTATTTTTTAATGCAAGTTGGTTCACTGACATGCGTTATTATTCGCTGTGCAACAATTGTTTATAGGG GTATCGTGCTCCCATTGCTTACCATGGAGAAAGTGAAGATCTCAAATTTGAGCCAACTCGGGCTGCTAAAGATAAAACTC AGAGAGATAAAGGTGTTTATGTTGGTGTACAGGAGGAAGATGAGGTTGATACTGAAGATGATGGGCTTGATGATATTTGG AGGGAAATGTCAATGGCCGTAGAATGTTCGAAGGTATGTTTACTTTAACTTGTTTTCACATTTCAGTGAGAATGGCTGTC TTTGTCAATTCGCTATATCTTCTACTCATCGGTTCCTTCTTTCATGCCATTTCATTGGTACTTGTACTAGGATGCTTCTG TGAATCCTCCGCCCGAGGAAGAAGTTGAAAAAGAAGACGACTGTGATCATTCTTTTGTTTTAAAAGATGATCTTGGTTAT GTTTGTCGTGTTTGTGGCGTCATTGACCGAGGAATTGAAACCATATTTGAGTTCCAGTACAAGGTTAGACTCTTGTCTCA ATGTTAATGATTTTCATGTTATAAATCTTGGTCATAAAATAGTTAGTGTGAAATTGAGTTTTTTAAGTATGCGGCTTGAA AATAGATTTGTAGATTGAATGTTTGACTCAGGACATAACAATGCTTAAATTAAAACAGTTAGAAATGTGTTCCAAAAACT CTTCTGATAGTTTATGGTTTCCTCTACCTCTTTTGTGGGAAAATAGGTGATTTGTTTGATTCAACTTCATAAAGCACTCA AGAACTTCTTTACTGAACCATAATAATTTAATAGCAGGCAGGACATTTTTATTATTTGGGCTCAATTTCTTTGTAAAACA TTGCCTAGTTCATAATTCTGTATGTTCTGGACTAAAACATGAGATGACTTATAGCTGGGGACAGCGAGTGATCAAAAATG ATTTTTTATTCTTATTTTCTTATTGAAGGTTAAAAGGAGCACAAGAACTTACATGGCTGATTCATGGAATGCCAAAGCAA AAGTTGATGTATATGGAATTAATATTGCTGAAGATGACATCATGTTTACTGAAATTTCAGCACATCCTAGGCATATGAAA CAAATGAAGTCTCATCAAATTGAAGGGTTCAATTTTCTCGTCAGAAACCTTGTAGGTGACAATCCTGGGGGCTGCATCTT GGCCCATGCTCCAGGATCTGGGAAGACATTCATGATAATCAGTTTCATGCAAAGTTTTCTAGGAAAGTACCCAAATGCTA GACCTCTGGTGGTGCTTCCCAAGGGAATACTATCTACTTGGAAAAAGGAGTTTCAGACATGGCAAGTGGAGGACATACCA CTTTACGATCTTTACACTGTGAAGGCAGACAGTAGATCACAGCAGTTGGAAGTTTTGAAACAATGGGTGGAATGCAAGAG CATCCTTTTCTTGGGGTACAAGCAGTTTTCTTCAATTGTCTGTGATAATAGTACTAACAGCATATCAATATCTTGCCAAG ATATATTGCTTAAGGTACCTTCAATTCTCATTTTAGATGAAGGACATAATCCGCGGAATGAGAATACTGATATGGTGCAG TCCCTTGCAAAGGTAAAAACACCTAGAAAAGTTGTACTGTCAGGTACCTTGTATCAAAACCATGTGAAGGAGGTATTTAA TATTTTGAATCTGGTTCGGCCAAAGTTTCTAAAGATGGAAACATCTAGGCCTATTGTCAAGCGCATTCACAGTAGAGTAC ATATATCGGGCAAGAAATCTTTCTATGATTTGGTGGAGGACACTTTGCAGAAGGACCCGGATTTTAAAAGGAAAATAGCT GTTATTCAAGATTTGCGTGAGATGACGAGTAAGGTACTTCACTATTACAAAGGAGATTTTCTTGATGAGCTTCCTGGTCT GGTTGATTTTACTGTGTTGCTTAAGCTGACCCCAAGACAGAAGCATGAAACTGGGAAATTAAAGAATATATCTAGAAAGT TCAAGGTATCTTCTATGGGCAGTGCGCTGTATCTTCACCCTAGATTGATACCTGTTGCGGATAAATGTGGTGAAAACTCT GTATCTGACCAAATGGTGGATGATTTAATTGAGAAGTTGGATGTGAAAGATGGAGTGAAGTCGAAATTCTTCATGAACAT TCTAAACTTGTGTGAATCATCCAACGAGAAGCTTCTGGTGTTCAGCCAATATCTCTTACCTTTGAAATATTTAGAGAGGT TAGTTATGAAATGGAAAGGTTGGAGTTTTGGGAAAGAAATCTTCGGAATCTCAGGGGAATCTAGCTCTGAGCAAAGGGAG TGGTCCATGAACAAATTCAACAATTCACCTGATGCTAAAATCTTCTTTGGTTCAATCAAGGCTTGTGGAGAGGGCATATC TTTGGTTGGGGCATCCCGAGTACTCATTTTGGATGTTCATCTGAACCCGTCAGTTACTCGTCAAGCTATTGGTCGTGCAT TTCGACCAGGACAGACAAAGAAGGTCTTTGTGTACCGATTGATAGCTGCTGATTCTCCAGAAGAGGATGATCACATTACT TGTTTCAAGAAGGAATTGATTTCAAAGATGTGGTTTGAATGGAATGAGTACTGTGGTGATAGGGCCTTCCAAGTTGAGAC AGTTAGTGTCAATGAATGTGGTGATGAGCTCCTTGAGACTCCAATGTTAGGAGAAGATGTAAAAGCTTTGTATAAAAGGT TTGAGACCACTCTTTGTTACAATCATGCTGTTCTTCTTCACTAATACTGGTTTTATTTGTATGTCAGGTAAACTGTTGGC ATTCAGATTCAGTGGACTTGGATAGCAAATGTTGACTGCATTTATGGTACACATTTTTACCACTGTATTTGTTGATACTG AACAATGTAGACTGTAGAGAGTGGCCTAATTGACTTAGTTGTCTTTGCTCTTTGTACACATGTGATCCATCTTCCTCACT CTTGTGTGAGTGTAGAGATGTACAGAGTATTAAACTTTCCTGACTTGTTATAATTGCTTGTAGTCTTTTATTTCTGTTGC ATCAGCTTATCTGGTTGAGATGCTAATACTAATATTACTTTGCTTCAGGAGATATAAGTAGTCAAAATAATTAACTCAGT TTAAATTGAGATTACTGTACTGTGTTGATGCTCATACAATATGTGATTTCATCTTGTTGGCCTAATGAAAAAATAAAACC TGCTAGCAGGATGCATTTGCTTGCTGCATACAATGTGATAAGTCTTTTAGGTGTCTTATTT
CDS sequence (LotjaGi1g1v0781900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGCAGCAATTGATGTGTTACCACCTAAACGCCCTGCCTCAAGTGGAATTTCTCCTCAGGGACATAAAAGACTGAA ACTATCTAGTGATAGTCTGCCATACTCAGCACATGATAAAGCTGTGCCAGAGGCACCTACAAATGTTGAAGACTTCAGCA ATCCATTTGCAATCTCTGATTTTTTAAATCGTTTAGAAAGTGGAAAATTTGGAAGTGTCACAAAGGACATAGAGGCCCTT ATAACCCGAAAAATGCAAGTACTGGGCCCTTTCTTTGCAAAGTTTCCTAAACTTGTTACTCAATCATTAAACGTGGTTGT GAACCACAATGAAGAAAGTAATAAGTTGGAAAATAAAAAAGGCACCATCATGTCACATGATAAAGTAGTAGATTTGGAAG AGGAGCACACTAAGAAGGATGCTTCTGCAGCACAGCCTGTTGTGATTATTGATTCGGATGAGGAAGATGATAGAGACAAA AATTCTTCTCTTCCATTTAATGAAGTAATGTTTCCGAACTCACTCCAATCTCCTGCATTGAGGATGATGGGGTATCGTGC TCCCATTGCTTACCATGGAGAAAGTGAAGATCTCAAATTTGAGCCAACTCGGGCTGCTAAAGATAAAACTCAGAGAGATA AAGGTGTTTATGTTGGTGTACAGGAGGAAGATGAGGTTGATACTGAAGATGATGGGCTTGATGATATTTGGAGGGAAATG TCAATGGCCGTAGAATGTTCGAAGGATGCTTCTGTGAATCCTCCGCCCGAGGAAGAAGTTGAAAAAGAAGACGACTGTGA TCATTCTTTTGTTTTAAAAGATGATCTTGGTTATGTTTGTCGTGTTTGTGGCGTCATTGACCGAGGAATTGAAACCATAT TTGAGTTCCAGTACAAGGTTAAAAGGAGCACAAGAACTTACATGGCTGATTCATGGAATGCCAAAGCAAAAGTTGATGTA TATGGAATTAATATTGCTGAAGATGACATCATGTTTACTGAAATTTCAGCACATCCTAGGCATATGAAACAAATGAAGTC TCATCAAATTGAAGGGTTCAATTTTCTCGTCAGAAACCTTGTAGGTGACAATCCTGGGGGCTGCATCTTGGCCCATGCTC CAGGATCTGGGAAGACATTCATGATAATCAGTTTCATGCAAAGTTTTCTAGGAAAGTACCCAAATGCTAGACCTCTGGTG GTGCTTCCCAAGGGAATACTATCTACTTGGAAAAAGGAGTTTCAGACATGGCAAGTGGAGGACATACCACTTTACGATCT TTACACTGTGAAGGCAGACAGTAGATCACAGCAGTTGGAAGTTTTGAAACAATGGGTGGAATGCAAGAGCATCCTTTTCT TGGGGTACAAGCAGTTTTCTTCAATTGTCTGTGATAATAGTACTAACAGCATATCAATATCTTGCCAAGATATATTGCTT AAGGTACCTTCAATTCTCATTTTAGATGAAGGACATAATCCGCGGAATGAGAATACTGATATGGTGCAGTCCCTTGCAAA GGTAAAAACACCTAGAAAAGTTGTACTGTCAGGTACCTTGTATCAAAACCATGTGAAGGAGGTATTTAATATTTTGAATC TGGTTCGGCCAAAGTTTCTAAAGATGGAAACATCTAGGCCTATTGTCAAGCGCATTCACAGTAGAGTACATATATCGGGC AAGAAATCTTTCTATGATTTGGTGGAGGACACTTTGCAGAAGGACCCGGATTTTAAAAGGAAAATAGCTGTTATTCAAGA TTTGCGTGAGATGACGAGTAAGGTACTTCACTATTACAAAGGAGATTTTCTTGATGAGCTTCCTGGTCTGGTTGATTTTA CTGTGTTGCTTAAGCTGACCCCAAGACAGAAGCATGAAACTGGGAAATTAAAGAATATATCTAGAAAGTTCAAGGTATCT TCTATGGGCAGTGCGCTGTATCTTCACCCTAGATTGATACCTGTTGCGGATAAATGTGGTGAAAACTCTGTATCTGACCA AATGGTGGATGATTTAATTGAGAAGTTGGATGTGAAAGATGGAGTGAAGTCGAAATTCTTCATGAACATTCTAAACTTGT GTGAATCATCCAACGAGAAGCTTCTGGTGTTCAGCCAATATCTCTTACCTTTGAAATATTTAGAGAGGTTAGTTATGAAA TGGAAAGGTTGGAGTTTTGGGAAAGAAATCTTCGGAATCTCAGGGGAATCTAGCTCTGAGCAAAGGGAGTGGTCCATGAA CAAATTCAACAATTCACCTGATGCTAAAATCTTCTTTGGTTCAATCAAGGCTTGTGGAGAGGGCATATCTTTGGTTGGGG CATCCCGAGTACTCATTTTGGATGTTCATCTGAACCCGTCAGTTACTCGTCAAGCTATTGGTCGTGCATTTCGACCAGGA CAGACAAAGAAGGTCTTTGTGTACCGATTGATAGCTGCTGATTCTCCAGAAGAGGATGATCACATTACTTGTTTCAAGAA GGAATTGATTTCAAAGATGTGGTTTGAATGGAATGAGTACTGTGGTGATAGGGCCTTCCAAGTTGAGACAGTTAGTGTCA ATGAATGTGGTGATGAGCTCCTTGAGACTCCAATGTTAGGAGAAGATGTAAAAGCTTTGTATAAAAGGTTTGAGACCACT CTTTGTTACAATCATGCTGTTCTTCTTCACTAA
Protein sequence (LotjaGi1g1v0781900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEAAIDVLPPKRPASSGISPQGHKRLKLSSDSLPYSAHDKAVPEAPTNVEDFSNPFAISDFLNRLESGKFGSVTKDIEAL ITRKMQVLGPFFAKFPKLVTQSLNVVVNHNEESNKLENKKGTIMSHDKVVDLEEEHTKKDASAAQPVVIIDSDEEDDRDK NSSLPFNEVMFPNSLQSPALRMMGYRAPIAYHGESEDLKFEPTRAAKDKTQRDKGVYVGVQEEDEVDTEDDGLDDIWREM SMAVECSKDASVNPPPEEEVEKEDDCDHSFVLKDDLGYVCRVCGVIDRGIETIFEFQYKVKRSTRTYMADSWNAKAKVDV YGINIAEDDIMFTEISAHPRHMKQMKSHQIEGFNFLVRNLVGDNPGGCILAHAPGSGKTFMIISFMQSFLGKYPNARPLV VLPKGILSTWKKEFQTWQVEDIPLYDLYTVKADSRSQQLEVLKQWVECKSILFLGYKQFSSIVCDNSTNSISISCQDILL KVPSILILDEGHNPRNENTDMVQSLAKVKTPRKVVLSGTLYQNHVKEVFNILNLVRPKFLKMETSRPIVKRIHSRVHISG KKSFYDLVEDTLQKDPDFKRKIAVIQDLREMTSKVLHYYKGDFLDELPGLVDFTVLLKLTPRQKHETGKLKNISRKFKVS SMGSALYLHPRLIPVADKCGENSVSDQMVDDLIEKLDVKDGVKSKFFMNILNLCESSNEKLLVFSQYLLPLKYLERLVMK WKGWSFGKEIFGISGESSSEQREWSMNKFNNSPDAKIFFGSIKACGEGISLVGASRVLILDVHLNPSVTRQAIGRAFRPG QTKKVFVYRLIAADSPEEDDHITCFKKELISKMWFEWNEYCGDRAFQVETVSVNECGDELLETPMLGEDVKALYKRFETT LCYNHAVLLH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 25 | 25 | - | – | |
| PANTHER | 39 | 875 | 837 | 0.0 | – | |
| PANTHER | 39 | 875 | 837 | 0.0 | – | |
| Gene3D | 314 | 568 | 255 | 2.9E-47 | ||
| SUPERFAMILY | 326 | 540 | 215 | 7.55E-32 | ||
| SMART | 341 | 555 | 215 | 1.0E-13 | ||
| CDD | 345 | 553 | 209 | 6.16738E-76 | – | |
| Pfam | 349 | 544 | 196 | 3.8E-20 | ||
| ProSiteProfiles | 359 | 538 | 180 | 13.489 | ||
| SUPERFAMILY | 484 | 838 | 355 | 7.09E-38 | ||
| Gene3D | 608 | 861 | 254 | 1.2E-39 | – | |
| ProSiteProfiles | 668 | 852 | 185 | 10.723 | ||
| CDD | 674 | 811 | 138 | 5.88162E-39 | – | |
| Pfam | 689 | 799 | 111 | 3.9E-9 | ||
| SMART | 715 | 800 | 86 | 6.9E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi1g1v0781900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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