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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0782800 |
| Transcript ID | LotjaGi1g1v0782800.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-binding KH domain-containing protein; TAIR: AT3G04610.1 RNA-binding KH domain-containing protein; Swiss-Prot: sp|Q9SR13|FLK_ARATH Flowering locus K homology domain; TrEMBL-Plants: tr|I1NCB1|I1NCB1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0782800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:135593478..135600755) extracted from Lotus japonicus Gifu genome v1.2.
ACCACTGCACTTATTTGTCCATCGTCACTCGTCAATCTCTCACTCCTTCTACATCACCTTTCTCTCTTCCTCAACCCCAA TCAAAACCCTAGATTCTGATTCCACCATTCTCACTCTAATCCACTTCACCCAAACTTGCAATCTGCATCCCCATCTCGCA ATCAAGGTATATTTCAAATCACTGTATTCATTTATTCAGTCATTTATGGTACTATATAGTTACTTGTTCAATCATTGATT CGGTTACTTCTCACTAGCTTTTATCCGAATAAGCTTTAAAGATCTGTAATTTCTCCATTCTATAATCGCATGCATGTGAT GTTTCTTTTTCTGGAATCTAAATTATCATCCTTTGTTGTTTGTTTTTTTAGAAACCCCTTTTCCCATTATGGCTGAGGTT GATCAGAACACAGGTGAATTCGAGGCGGAGCAAGTAATTGAGAACTCAGAGCTGCCGGAGGAACAACACGAAGGGCGTGT CGAGGTTGAGCAGCAACAGGTTGAACGGCCTATTGCTGCTGCTGAGAAGAAATGGCCGGGGTGGCCCGGGGAGAGTGTGT TCCGAATGCTAGTTCCGGCGCACAAGGTTGGGGGTATAATTGGACGCAAAGGAGAATTTATTAAGAAAATTGTGGAGGAG ACGCGAGCTCGCGTTAAAATTCTTGATGGTCCTCCGGGAACTCCAGAAAGGGCTGTGAGTGTCTTATCATTCTCTTCTCA TAATTTTTTCACTGATTGAGTTTGCCATTGATTGTAGTAGTAGAATAATGTTCATGATATCTGATTTTTTTTTTTAATTT CCTATTGATCCCAGTGTTGTCAATCCCCACAAAAATGCTATTGCGGTGTAGCAGATAGCAAGATAGGCGCTATGCTGATT TATTGTATAGTTTATATAATATGACTATATACATATAAATGGTAAAAAAATACTCAAAATTTATGGCAGTGATAATCAAC ATTAAAAAGTCATAGGTGTCTTAAACAAAACATATTAGTACACCAAGAGGTTTACGTCTCTATTTCCTAAACTAAACTGC ATAAAAACATAAAAGTTCTATATCTCTTCCTCCTCATCCTCCTCTAACTAGACCATTTTCAGTATGTTTCCAAAGCAAAA ACCCTGTAATACCTCTCCAAAGTACCCTAACATGACCTTTCTGTGGGTGGTTTTGGGGTTTTATCAATTCAACCAAGTAG CAGCCAAATAGAACCACGATGACTGCTATTTCATTCGCTTGAGCGGCCGCAACAGCCGCTACACTGAATCACACTGCTCT ACAACAACTAGCACTATGCACTGCTATGGGGCTATAGCACCGCTATTGGCAACCCTGATTGATCCTAGACATTACTTGCA ATTATGGAATTGATTTGTATCTTATATCCCTTTGTTACTATTACTAGATATGTACATGATATACTATCGTGACTCTATGA ACTGATGTGGCTTTTCTAAGAAAAAGAACTACTGTGATGAATATTTATACATTCTTGGTCCATTTTCCTATTTATTCTGT TGTCAAACTAATAAATATTTAGATTAGAAAATATTGGGGGAGGGTCAAAGCTCCTTTTCACATATTGGAGGCTTAATTCT CTTTGAAAAACAATTAATGTTTCAGATATCACTCTAAGCTCTAAAGTAAATCGTAGTGGTACTAACTATTTTGAGTGGTC GTGTGTCTTTTTGTCAAAGATTAACAATTAATGTTTCAAATATTCAGATTAGAAAATATTGGGGGAGAGTCAAAGCTCTC CTCTTGTTGCAGCCAGAAATTTAAATTAAAGTATTATAGCAATAAAACAATATGGATTATTTATGAAATAAACTCTACCT TACTCTGTGATACAATGAAAAAATGAACTAAGATTAAGAAGATGAAGCAAATTCAAAAAAGCACAATGGTGGCAAGAATC CATAAAATATGAATTTAATTCTAACAGAAAATGAATCTTGCAGGTTCAATGTTCCAATTTTAAAGGCAACGACTCAATCA TCAATTTGATCCCAATATTGAAGAACCAAAGTTCCGGATGCAGGGATCATCATTGAGCATTGCAAAGTTCTGAAAAGTTT ATTATCATGTAGACATTTTGTACCAAAGTACCACGAAGCTCTGCATTCCAGCTGGTAAATTCAAAACCTGGATGGTTGAT GTCTTGCCGCAGATTCCAAGCAATGAAAAAAAAGCTTATAACCAGCTCTAATACAATACTGAAACCATTAAATTTCAAAT CTGAAGACTTTTGTTTGTCATACGTATTATTAAAAGAAAAAAAGAATTAAAAAACTACCCAAGCTTATCAATCAATTTTC TTTTTAACACATGGAGTTTCTTTTTGTGTTAACCATTGGTAGTTCTTCAATATAAATTATTGGCAATACTGTTGATATAA TTAACTAGAATTCACTAATTTGAACCAAGACTCAATCATTGAAGAATTAAAAGACACTTCCATGTTGACGCCCCTTAAAT GTGACATGCATCTTACATCTTGTGTGTCACATATCAGAATGATTAAGTTCTGGTACTGGAGTTCCATTTTGCCAAGATGT TGTTTTGGTAAATTCTTAAATCTTAACCTATTTAAACTGTTTGGATATAAGTAGGAAGTAGTGTTTCTCGTGGTATATGG AATACTTGCAGTTATTAATAATATCTATATTGTTAAGAGAGCTGGGAAAAGAAATGTAAGGTGACATACTTATGGTCATT TCTCAGGTAAGAATAAAGGTAGACGGCTGAGAAAAGATATGTAAGGTGTGGAACGATTGTCACATATGTGCAGAGAAAGG GAAAAAGGAGGGGGATCTTGATTGGATGAAGAGTTAAGGAACGCAGTCTCTAGATTATACTAAATTTCTTCAGGTTTCGT TTGTTCTTTATAGAAGATACTCACTTAGACATCATCTAAATCATATTCCATTTATGTATCTGGATTCTGGAAACCAAAAT TTTGCACTAATATAATCCCCAGTTGCTCATAGTGAAACAATGAACAATGTGCTGCTATAATTGGCACTTAATTTTCAGAG ACTGCTATCAGAATAGTTTGTTAATGTAGGTTAATTAGGTGCAAGACTTGTGTTAATGTCTTAAATATATTGAGCAATAA GACTGTTGAACCGGTGGTGAAGGATTTCTTCTTGCATCTTTGCTGCCAGGTGAGGATATCATAAAGATTAATTAGGGTAG AAAATACCACAGAAAGAGGATTGGTTGTTTTGCTGAATCCTTTAAATTATTACATTTTATACATATTAATCAAATTGCTT GCTTGTATGCTTTCTTGCTGAGCCTGATATTGTTGGTGGTGCTTTGTAATCAGTGTTTGTTTGGTACTCTATACAAAAGG TATTCTTGTTACACATAGACGTTCCCCACCTTGGAGAGGATGTTAAGTTCAATGATGGGCTGATAATGTTATTTCATATT TGTTCATTTTGATCAGGTAATGGTATCAGCTAAAGAGGAGCCCGACTCTTCTCTCCCTCCTGCTATAGATGGCTTATTGA GGGTTCATAAACGGGTAATTGATGGTTTGGAGAATGATTCTACCCATGCTTCTTCAGGTGTTGTCGCGAAGGTTTCTACA AAGCTACTAGTGCCAGCCTCACAAGCAGGAAGTTTAATTGGGAAACAAGGAGGAACTGTAAAATCTATCCAAGAAGCGTC AAATTGTATAGTTAGAGTTCTTGGAGCAGGTTCATGCTAATATTCCGTATAAAAATATATTCTCTGGTTGCTGCATTAAT ATCTTTTTTCATTTTTTCATTTTTAGAATTCTGTAATTATGTGGGCCTCGTTGCTTTTTGTTGTTGCAAACTTTACTTCC TTGGTTTTGGTCAGAGGTAACTTTGAGCCTCATCCACTGGGTACCAGAGCTGTCATAGAAATTGTCTGAATGTGCTTTTA AGGCCATTCACTGTGATGAGGCCTGGTTCCTGACCCTCCACAAATTATATGACCGTTGTCTTGGCTCTTTCTTGTCATTA CAAGTATATCTTAAAATTCTTGCTACTGTTCAGTTTAACTTTTGCTTTTATTGATATCATGAAAACTGTCAGATATGTAT CACCAACTCTGAACAGTAACACTTAAATGACTTGCTGAAAAAAATATTCATTTATTAATTCACTTGTCTGGAAAATAATC ATGATCTCATTTTTTACATTCTATTTACTTTTGAACTTTGGCTTTCTGGAATCTTCCTTTTCTGTTGAATATTATTTCTG GGATACAATTTCAGGGAGAATGAATGAATGATGGACAAAATTACAGCTATTAATTCTCGTGTTCTGATTTATGCTTTTAA ATAAAGTATTTCTTGACATTTGAAGCTTGTTTCCAATGTTTGCATTTGGGTCCTTGCGTGGGATGTTTGACATTCTGTGG CTTCTAAGCATCTTCTTTCTTGTCTGCAGAAGACCTGCCTAGTTTTGCTCTTCAAGATGATAGGGTGGTTGAAGTACTTG GGGATCCCACTGGAGTGCATAAGGCAGTAGAACTAATTGTATCTCACTTAAGGAAGTTTTTAGTTGATCGCGGTGTAATT CCAATTTTTGAAATGAATGTAAGTGTGTGATTTAGTCTTACGCTTAATGAAGAACATATCTTACACTTGCTGATAAATGC AACTAAATTGTTCTTTCTCCAGATGCAAACGGCTAATTCCCATCATGTGGAGCACATGCCTCCCCACCAATCATGGGGCC CTCCTCAGGGTCTTCCACCAAATGCTGGTGGAGGTCCTGGTTTTGGACCTCCCCCTCCTCAATACATGCCGCCTCCGCGA CAGCATGATAATTACTATCCACCAGCTGAAATGCCTCCTCCTGTGGACAGACAGCCTCATTATGGTATATCTGCCTATGG AAGAGATGCTTCAGTCGGTGTTCATGCATCTTCAAATACCCAGTCTGCACCTTCCATAGTCACACAGGTACTTGTTCTTC GAACCCATTAGCAATACCTTGTATTGAAAGATATCTTGGAACCATATTTTTATAAAATTTGCATTTTGTGGATGTTTTTG AATTCGCTGTCTCTGTAGGTGTGTTTCTGTGGTTTGATGAGGGGACTTGTTGACTGCAGACCTGCAGTTTTATAATTTTG TGCTATAGCTATGGTAAACCTAGTGGTAAAGTTTCCATGTAAATTGACAGGCGTTGCTTTCCAGTTTAGGACTGGGTTTT TTTAAGCTTTTTTCCCTTAAAAAATCACTTAAAAGTCCTTAGAATATTTGCTTAAGCATTTGCAGTTTATTTATTTTTGG TTATTCTAAGAAGTTACTTTGAGTACCTTCTGAAATAAGTTATAATATTACTACTTTTTGAAAATAAAGTGTTTTAGCCA TTGTAACCAGATAATAAATAATTTCTGCTTACATACAATTTGTAGAAGTAAGTAATTTGTTTGCTCAACTTAAAATTTGT TTTTAAGCTGGGAGCCCCTTGATGATGTTAGTGCACACAAATACATGGATGCTCACCTTAAATATTTGAAGCTAAACAAA GCCTGTGGAATACCGTGTGAATGCCAGCTTCTGTTGTTGAGATTGAACTTGGCTGGTGTAATGTAATGGCTGATTAGTAG TTTAAGCTTGGCTTCAAAACGGAACTATAGATGTAGCTATGCAGTGTTCGGCTTTGTATCGATAGTTGGGATATAGGAGA GCATGCAAGTTCTTGCTCTTAATAAAAGTGCGTTGTTATTTTTTGCAGATCACACAACAAATGCAAATTCCTCTGTCTTA TGCTGATGCTGTTATTGGAACTGCTGGAGCAAGTATAAGCTATATCAGAAGAGCTAGTGGGGCTACTGTTGCCATACAAG AAACAAGAGGTGTTCCTGGGGAGATGACAGTTGAAATCAGTGGAACTGCTGCTCAAGTCCAAACAGCGCAGCAACTGATA CAGGTAATTCTGATCTCACTCTGTCTTTTAATTAATTTAAGAAGTTTTCGATCCCTAAAATCCTGCATGTATTATAACTT GTTTTTATTGCTGTAGTTAGATTATTTCTCTTTTATAATATTTCATTTCGTTTTCATGCATTATCTTTCTTTTCTCAGTT TGTTCCTTAAGATAGGCTGAGGATTTTCTGCGCTCGACACTAATCTTGCCACATTTATGTTAATGTTCGAATTTAACATG ATTAGTTTGCATGATAACTGAGCAACATAATTATGCATCTGTGGTGCAGAATTTTATGGCTGAAGCTGCGCAAGCACAAC CAGCACAAGCACAGCCTCAAACAGTTGGGCCTCCTGACCAAGGATACAATTCTTACCCTGCTCATGGTTCTGTCTATACG TCTCCACCTTCCAATCCAGGACATGCTGGAGGCTATGGCTCAGCTTATGGTGCAAACTATGGGTACTAAACTGGGCAGTG CAACTAAAGTCATCATTGTTGAAATGTAGAATCCTGGGAACTTATTTCATGTAACAATTTAACAATTATTAGGACATTGT GTTTCATGTTTTGTTTCTAAATATATAAAAATTGTGATTTTTATTTGATATTAGTTTTCTGTTTGTATTGGTAAATCTTC GGACAGGTTTAAACAAACTATTTGTGGCCTTCTAATGTTTGATTCACTTGTTCTGAGATTCTTTCTAGTTGGTCCTCCTA TGTCTTTCTGCTTATGCTAGTTAAACACTGGCAAAAGCCAACGAACTTGTTGAATTGAGAGTGTCGAGAGGATCTTGTCA CATGAATTCATAAATGGTTTTTTTGTTGGAATTCCGCAAGCTTTAGTAAAAGTCGTAGAATAAATACTCAAACACGCGTG TATTATAGGGAGCTTATGAAAGTACTCAAAAACATGTGAACAGAATTGAAAAAAAAAGAAAAAAAAATGTGAACAACTTT TGTTTTAAACATTGATTATACAACGTCTCCCCGGAGTTTCAAAACAGTTTGCAAACACACTAATGACTCTAATTGAGCTA TTAGTTAGAAATCATATTTGGTAGTTTTTCAATGGTGGAAGATAAAAGTTCTCCACAGCAAATCAGTTTTTTAAAATGTA GACCGATGATTTGTGAAATGAGTGAAATGCAGAGATATATGAAAAAAAAATTGTAAAAATGAAATGCGAGAAAAAGTGAG GTGTGAATAAATCATTACTCATTTCAGAACCAAATAGAGATGATGTATAAAGTACCAAAAAGGAATCAAATTCAAATATA AACAAAACAACGTTAACGAACTCGTAACAGCCCGATTCACGTGCTGGAATCACGCGTTATTGGTTGAGTCTTTGGTTG
CDS sequence (LotjaGi1g1v0782800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGAGGTTGATCAGAACACAGGTGAATTCGAGGCGGAGCAAGTAATTGAGAACTCAGAGCTGCCGGAGGAACAACA CGAAGGGCGTGTCGAGGTTGAGCAGCAACAGGTTGAACGGCCTATTGCTGCTGCTGAGAAGAAATGGCCGGGGTGGCCCG GGGAGAGTGTGTTCCGAATGCTAGTTCCGGCGCACAAGGTTGGGGGTATAATTGGACGCAAAGGAGAATTTATTAAGAAA ATTGTGGAGGAGACGCGAGCTCGCGTTAAAATTCTTGATGGTCCTCCGGGAACTCCAGAAAGGGCTGTAATGGTATCAGC TAAAGAGGAGCCCGACTCTTCTCTCCCTCCTGCTATAGATGGCTTATTGAGGGTTCATAAACGGGTAATTGATGGTTTGG AGAATGATTCTACCCATGCTTCTTCAGGTGTTGTCGCGAAGGTTTCTACAAAGCTACTAGTGCCAGCCTCACAAGCAGGA AGTTTAATTGGGAAACAAGGAGGAACTGTAAAATCTATCCAAGAAGCGTCAAATTGTATAGTTAGAGTTCTTGGAGCAGA AGACCTGCCTAGTTTTGCTCTTCAAGATGATAGGGTGGTTGAAGTACTTGGGGATCCCACTGGAGTGCATAAGGCAGTAG AACTAATTGTATCTCACTTAAGGAAGTTTTTAGTTGATCGCGGTGTAATTCCAATTTTTGAAATGAATATGCAAACGGCT AATTCCCATCATGTGGAGCACATGCCTCCCCACCAATCATGGGGCCCTCCTCAGGGTCTTCCACCAAATGCTGGTGGAGG TCCTGGTTTTGGACCTCCCCCTCCTCAATACATGCCGCCTCCGCGACAGCATGATAATTACTATCCACCAGCTGAAATGC CTCCTCCTGTGGACAGACAGCCTCATTATGGTATATCTGCCTATGGAAGAGATGCTTCAGTCGGTGTTCATGCATCTTCA AATACCCAGTCTGCACCTTCCATAGTCACACAGATCACACAACAAATGCAAATTCCTCTGTCTTATGCTGATGCTGTTAT TGGAACTGCTGGAGCAAGTATAAGCTATATCAGAAGAGCTAGTGGGGCTACTGTTGCCATACAAGAAACAAGAGGTGTTC CTGGGGAGATGACAGTTGAAATCAGTGGAACTGCTGCTCAAGTCCAAACAGCGCAGCAACTGATACAGAATTTTATGGCT GAAGCTGCGCAAGCACAACCAGCACAAGCACAGCCTCAAACAGTTGGGCCTCCTGACCAAGGATACAATTCTTACCCTGC TCATGGTTCTGTCTATACGTCTCCACCTTCCAATCCAGGACATGCTGGAGGCTATGGCTCAGCTTATGGTGCAAACTATG GGTACTAA
Protein sequence (LotjaGi1g1v0782800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAEVDQNTGEFEAEQVIENSELPEEQHEGRVEVEQQQVERPIAAAEKKWPGWPGESVFRMLVPAHKVGGIIGRKGEFIKK IVEETRARVKILDGPPGTPERAVMVSAKEEPDSSLPPAIDGLLRVHKRVIDGLENDSTHASSGVVAKVSTKLLVPASQAG SLIGKQGGTVKSIQEASNCIVRVLGAEDLPSFALQDDRVVEVLGDPTGVHKAVELIVSHLRKFLVDRGVIPIFEMNMQTA NSHHVEHMPPHQSWGPPQGLPPNAGGGPGFGPPPPQYMPPPRQHDNYYPPAEMPPPVDRQPHYGISAYGRDASVGVHASS NTQSAPSIVTQITQQMQIPLSYADAVIGTAGASISYIRRASGATVAIQETRGVPGEMTVEISGTAAQVQTAQQLIQNFMA EAAQAQPAQAQPQTVGPPDQGYNSYPAHGSVYTSPPSNPGHAGGYGSAYGANYGY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 37 | 37 | - | – | |
| PANTHER | 6 | 451 | 446 | 3.6E-175 | – | |
| PANTHER | 6 | 451 | 446 | 3.6E-175 | – | |
| MobiDBLite | 20 | 35 | 16 | - | – | |
| SUPERFAMILY | 49 | 109 | 61 | 1.29E-13 | ||
| SMART | 54 | 134 | 81 | 8.6E-7 | ||
| ProSiteProfiles | 55 | 122 | 68 | 13.774 | – | |
| Gene3D | 55 | 225 | 171 | 6.3E-35 | – | |
| CDD | 57 | 126 | 70 | 3.25709E-18 | – | |
| Pfam | 58 | 110 | 53 | 3.3E-12 | ||
| SUPERFAMILY | 142 | 231 | 90 | 6.87E-16 | ||
| SMART | 146 | 221 | 76 | 7.3E-14 | ||
| ProSiteProfiles | 147 | 216 | 70 | 16.039 | – | |
| CDD | 149 | 217 | 69 | 1.43965E-18 | – | |
| Pfam | 150 | 217 | 68 | 4.8E-15 | ||
| MobiDBLite | 245 | 284 | 40 | - | – | |
| MobiDBLite | 254 | 284 | 31 | - | – | |
| Gene3D | 318 | 405 | 88 | 4.6E-17 | ||
| SUPERFAMILY | 321 | 403 | 83 | 2.34E-15 | ||
| SMART | 330 | 400 | 71 | 7.7E-9 | ||
| ProSiteProfiles | 331 | 395 | 65 | 14.739 | – | |
| Pfam | 333 | 396 | 64 | 2.3E-11 | ||
| CDD | 333 | 396 | 64 | 7.57529E-12 | – | |
| MobiDBLite | 405 | 437 | 33 | - | – | |
| MobiDBLite | 405 | 442 | 38 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
Expression pattern of LotjaGi1g1v0782800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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