Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0784100 |
| Transcript ID | LotjaGi1g1v0784100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb-like transcription factor family protein; TAIR: AT5G29000.2 Homeodomain-like superfamily protein; Swiss-Prot: sp|Q8GUN5|PHL1_ARATH Protein PHR1-LIKE 1; TrEMBL-Plants: tr|I1JRR7|I1JRR7_SOYBN PHR2; Found in the gene: LotjaGi1g1v0784100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:135696459..135701154) extracted from Lotus japonicus Gifu genome v1.2.
GAGAAGAGAAAGGTTATCTTAAATCCTAACCTAATCATGATATCATGAGAAACAGAGAATCAATCAACGAACACAAGAGT CTGGGACTCTGCGAGGGAGTGACCGAGTTTTGGTTTCCGAGATTGTTTGTTTGAGTTAAACACGACAAAACCCAATTACG TGTGCATTTTAGTCATTACAACTCCTTCTCCTTCTTCTCTTCCTCTGTTCTTATACCCTTCCCTTTTTCCCTGGATTTGC AGCTTTTTCAGATTCTGTTTACTGGTTTTTCATTATTCCGAAGCAATCATCGTTTTACAGGTGAGAGCTCTGTTGCTCCA TGATAATCATGCACCAACTTTCTTCATTTTTTATGATTTTGTTTTGCTTGGTTGTACTTTCAGATAAGATTATTAATTTG AGCTTTCATCTATCAACTTCTATGTTTCATGTTGAATTTTGTAAAGTCCATGGTTGAAAATTTCTCTAAATCTGGGACTG TGTTTTTGATCTGTAATTGGGTGGGTAGCCTGAATAAACGATTATGACTTCCTTTACTTTAATTTGTGGTTGCAAATTTT CAATTGGATGGCACCCCACCAACCCTCCCCTGGAGTTATTGGTCTTTGAGGGACTTGGTTTTCTGTATCAATTGCAACTC ATCATTGCCACCTATATAATTTCTGTAAAAATTTTCAACTATATCTGTGAAAATTTGATGTACATGGGTGTTGGATAACT TGTTGCATTACTTCCTTTCTATCTGTTTTTTTCTTGTCTCCTCAGATGAACAACAAGCTAATATTGTTGACTATTGAGAA TTGAGATATTAAAAAAATAGCATTCTGAATTGCTGTATAAAAGCATGTTTGGATCTAAGCGCATGTTTGGATACACGTGG AAAACCACAGTGAAGTTAAAATCATGGTGGACATCCCCAAAAGCTAAGGGAAGCTGTTTCTGTCGACCGTGATTTTGGCT CACCCTGGTTTTACGTTGTGTATCACTAACTTATTTTTCCTCAGAGTCAATTTTGAAACCCTGAAACTACTCACATAAGC TTCTCCTGAGAATTGATTTTGTCTTTAGAATCAATTTGTGTAAAAAAATTCAAACAAGCACTCATTTGTCCACTTATTTT GGTGGTGAAGATAATTTGTTATTGCTTTACATTAGCTGACTTGCAAACTTGCTTTTATATATTGAAATCAGGACTGGCAA ACTGATTCACTTGGGAGCCTGAAGATATATGTCATCTTTGCCTGCTCTTCACTCTCCCCTTGAGAACAAGTATATGAAGC CACCCGATTCTTTCCTTGCAAGAGATCTGGCTGCAAATCCTGCCTCAAAACAAGCTACATCATCGAATATGACCAGAAGT GGTGAACAGATGTTTTCATCCCCTGCTGAATGTCCTGGTGATATCCGCTTTCATGCTGTTTCACAGCATGACAGGCAATA TCGAGATTCTCCATTCATTTCTCCAACATTAGGTGGCAATGTGACCTCCGAAATACATTCAACGGCATTGATTTCTCACC CTCAAGAAAACGATATTTCCTGGGGACCGGATCCATTTCAGGATATTCTTAGTTTTCCTGACAATGTTTTGGTCCAGAAT GATCAAGTGGAAAACGGTGCTTGTTACATGAATGATGACAATGTCAAGAGATCTGATTTTGGAGAGTGGGTTGATCAACT AATGACAATTGATGATTCGCAGCACCCAAATTGGAGTCAGCTTCTTGGTGATGACAATGTAGCAGAACCAAAGCCAAAGG TTTGTCTCTCAAGCTGGTTTTGAATGGTACTGTAATTGCTTTCTCTTACCTGTAAAATTAATCGAACATGTAGGTGGAAT CCCATTCCCGGATGTCTCATTTGTGGTCTAAGAGCCATGGTTTTCATACTTGAACTTGTTATTGAGGCACATGAAAAACA AGTCAATTTAATCTGTTTGGATACCCGTTACAAAGTATGAAAACGGGAAAATAACACCGATGCACTTTTTGTTGAATGAG GAAGCTGTTACCTCAACAAGAAGTGTCTCGGGATGTGTTATTTTTTCATTTTCATACTCTCTAACGGGCATCCAAACAGA ATCTAAACAATGTGTATAAATCTCAATAATTATGGACATAGTCATAAAAAATGCAGTCCTCTATATTTAAGCTCCCTTTT TTTCAGCTTTCTGCATGGAGAGTGTTGTGATTTATTTTGGTACATTTTGATGCTGAGTTCTATTTTCAATTTATTGTCAC CGTGTGCATTTGTGTATATACTTCATCACCTATTCCCTGTTATGCTGTTGATGTGGTTCTTAAAAGTTTGAATTCTATTT TTATGTGTACAGTACTTTTTGTCAATGGTGCATTTTATTTATTTGTCTATTTTTATTGTTCAAGCCACAAAAACATATCC TACACTTTTAATGCAGGCAATCCAGGTTTCCCCGCTGCAGCAGCTATCATCTGGAGAAGTTAGTGGTCTTTCTAATTCAG CATCAACTGCTTCACAATCTAAGCCTAGAATGCGTTGGACTCCAGAACTTCATGAGGCCTTTGTGGAAGCGGTCAATCAC CTTGGTGGTAGTGAGAGTATGTTTGCTTCTCATTACTCTCATACTTCTTGACTTTCTCTCTCGAATGTTTCTTGTCATCT AATGATGTTAACATGCAGAGGCTACGCCAAAGGGGGTTTTGAATCGGATGAAAGTCGAGGGCCTTACCATCTATCATGTA AAAAGCCACCTACAGGTACATCAATGATTTATCTTCCTCTTAAACTTCTTGTGGGTGTGTGTCAGTTTATTTAATCTAAT GTTTTTCGAAAAATTACTTGTTCTTTTAATTTCAGAAATATAGAACCGCTAGATACAAACCTGAGTCATCAGAAGGTATG AAAAAGTGTACTTATGACTTATGTTGTTCATATAATCAAGTTTATTACCAAGTATTGTTCTGATTTTTGGGTTTTTGAAG TTTCAATTAAGATGTTTTGTTTGCAATATCAATTGCATTTTTGTCTTGTGCTTTTTTATTTTCTTGACCCTATGTTTGGA TTGAGAGAAACAAAATATGGAGGAAACGGGCATTTTAAATTTTAATAATTGGAAAATGTCTCTGATTTGTTGATGAAAAA ATGAGATGTAAAGATTAGAAAGAGTTATAAAACAAAAAGTCAAAATTTTCTCATCATTTCGAAGTTTGAATTTTTCTCCC CTTTTCTCTCATCTAAACAAGGGTTAATTGTTAAATGCTTTTTTTCTCCTATTATTTTTGTTACGTTTTAATAATACGAT TTCTTTAGCATTTATGTACATAAGAATCACACAGAAGTTTCTTTTCTTTTCTTTTTTCAAAAGTATGAGAGTAAGAATGT GAATGGGATCCTCTTCTCTACTTGCAGGAACTTCTGAGGCAAAAATTACTTCAATCGATGAAATGAAATCGTTAGACTTG AAAACGTGAGTTGTCTATCTATATCACTTTTTAGCTATTCGTCAACATGTGTCCACTGATTTCTGTTATTTGGTGTGGAT CATTTGCTCTTGCATGGCACTGTGGCAGAATGTACTATTCACTCATTATTGTTATATATTTTTTGAATTTAAAATATAAT CTAATGCAGATTGGTACAAATTAGATGGTCCAAACAAGTTTGATTTTCCCCTTTGCTATGATACTTTTTTTCTTATTTTG ATTAGAAACCATAATTCCATGAGATTCTCTTATCTTGAACATTAATGCTCAATAACATGCTCCGGATTTCGGTTGCAGGA GTAAGGGGATCACTGAAGCATTACGGTTACAGATGGAACTCCAGAAGCGGCTTCACGAACAACTTGAGGTACTTTATTAG TAGTTTTGAGATTCACTGTGTAATCCAGAGGAGAGTTTTATTAGCTTTCTCTTTCTTTCTTGTTGGGAAGACTGAAGAGA GCAATCTTAAGCTTTGGCATGTTCTCATGTTCTAACTGTTATGCAGATTCAACGAAACTTACAGATTCAAATTGAAAACC AAGGTAAACATCTGCAGATGATGTTTGAGCAACAGAGAGGAATGGTTGAGAGCAAGGTTAAGGGCCCCTCCTCCCCTTCG GATGTGCCTTCTGCTGCACTATCAGACACGGCGCTACCTTCTTCTCCAATACACAATTTAGAAACCTCAAATGAGGAACA TGACAAGTTAACAAGCAATAATAGCAATCTGAAAATCATGCCTGAAGAAAGTTCCAAGGATGCAAGCAACAAGCAAATAG ATGGTGGAGCTGAAGTTACCAACGAAGATGAAGCAGTAGATGCAGCACCACCCCCAAAACGGGCAAAGATTTGATGAAAG CAGAATCAGGGTTTTAAGTTGCGGTTGTGGAATTGCAGACAATACTGTTTGATGTGGCCGCAACTGCAGTCGCAATGCTG TTGCGGTGACGCCAAAATCATAATTTAAAACCCTGAGTATAATTATTTTGTGCTCCTAGTGTTATTCTGCTGGAATTTCC CTTTCTGCTGATCATAATGATATACTCAATTTGCACAGCAGTTATGATTCTAGCTTCATTGTTTGGAATATAACTAATTG TCTTCCCTAGATTGTTTTTATATTAGTGGACATGTTTATAGAGACTGTGGAACTTGTAGAAATATTGTTGGATCAACTAG ATGGTTATGACAGATTTATAAGCAACATTAATTCTAAGGGTTTCGTTTTTTTTTCT
CDS sequence (LotjaGi1g1v0784100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCATCTTTGCCTGCTCTTCACTCTCCCCTTGAGAACAAGTATATGAAGCCACCCGATTCTTTCCTTGCAAGAGATCT GGCTGCAAATCCTGCCTCAAAACAAGCTACATCATCGAATATGACCAGAAGTGGTGAACAGATGTTTTCATCCCCTGCTG AATGTCCTGGTGATATCCGCTTTCATGCTGTTTCACAGCATGACAGGCAATATCGAGATTCTCCATTCATTTCTCCAACA TTAGGTGGCAATGTGACCTCCGAAATACATTCAACGGCATTGATTTCTCACCCTCAAGAAAACGATATTTCCTGGGGACC GGATCCATTTCAGGATATTCTTAGTTTTCCTGACAATGTTTTGGTCCAGAATGATCAAGTGGAAAACGGTGCTTGTTACA TGAATGATGACAATGTCAAGAGATCTGATTTTGGAGAGTGGGTTGATCAACTAATGACAATTGATGATTCGCAGCACCCA AATTGGAGTCAGCTTCTTGGTGATGACAATGTAGCAGAACCAAAGCCAAAGGCAATCCAGGTTTCCCCGCTGCAGCAGCT ATCATCTGGAGAAGTTAGTGGTCTTTCTAATTCAGCATCAACTGCTTCACAATCTAAGCCTAGAATGCGTTGGACTCCAG AACTTCATGAGGCCTTTGTGGAAGCGGTCAATCACCTTGGTGGTAGTGAGAAGGCTACGCCAAAGGGGGTTTTGAATCGG ATGAAAGTCGAGGGCCTTACCATCTATCATGTAAAAAGCCACCTACAGAAATATAGAACCGCTAGATACAAACCTGAGTC ATCAGAAGGAACTTCTGAGGCAAAAATTACTTCAATCGATGAAATGAAATCGTTAGACTTGAAAACGAGTAAGGGGATCA CTGAAGCATTACGGTTACAGATGGAACTCCAGAAGCGGCTTCACGAACAACTTGAGATTCAACGAAACTTACAGATTCAA ATTGAAAACCAAGGTAAACATCTGCAGATGATGTTTGAGCAACAGAGAGGAATGGTTGAGAGCAAGGTTAAGGGCCCCTC CTCCCCTTCGGATGTGCCTTCTGCTGCACTATCAGACACGGCGCTACCTTCTTCTCCAATACACAATTTAGAAACCTCAA ATGAGGAACATGACAAGTTAACAAGCAATAATAGCAATCTGAAAATCATGCCTGAAGAAAGTTCCAAGGATGCAAGCAAC AAGCAAATAGATGGTGGAGCTGAAGTTACCAACGAAGATGAAGCAGTAGATGCAGCACCACCCCCAAAACGGGCAAAGAT TTGA
Protein sequence (LotjaGi1g1v0784100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSLPALHSPLENKYMKPPDSFLARDLAANPASKQATSSNMTRSGEQMFSSPAECPGDIRFHAVSQHDRQYRDSPFISPT LGGNVTSEIHSTALISHPQENDISWGPDPFQDILSFPDNVLVQNDQVENGACYMNDDNVKRSDFGEWVDQLMTIDDSQHP NWSQLLGDDNVAEPKPKAIQVSPLQQLSSGEVSGLSNSASTASQSKPRMRWTPELHEAFVEAVNHLGGSEKATPKGVLNR MKVEGLTIYHVKSHLQKYRTARYKPESSEGTSEAKITSIDEMKSLDLKTSKGITEALRLQMELQKRLHEQLEIQRNLQIQ IENQGKHLQMMFEQQRGMVESKVKGPSSPSDVPSAALSDTALPSSPIHNLETSNEEHDKLTSNNSNLKIMPEESSKDASN KQIDGGAEVTNEDEAVDAAPPPKRAKI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 30 | 51 | 22 | - | – | |
| MobiDBLite | 31 | 49 | 19 | - | – | |
| PANTHER | 38 | 395 | 358 | 8.7E-131 | – | |
| PANTHER | 38 | 395 | 358 | 8.7E-131 | – | |
| MobiDBLite | 183 | 209 | 27 | - | – | |
| MobiDBLite | 183 | 208 | 26 | - | – | |
| Gene3D | 202 | 264 | 63 | 5.0E-28 | – | |
| ProSiteProfiles | 203 | 263 | 61 | 12.812 | ||
| SUPERFAMILY | 204 | 260 | 57 | 3.58E-17 | ||
| TIGRFAM | 206 | 260 | 55 | 4.3E-25 | ||
| Pfam | 208 | 259 | 52 | 1.1E-8 | ||
| Pfam | 293 | 336 | 44 | 3.7E-20 | ||
| Coils | 294 | 314 | 21 | - | – | |
| MobiDBLite | 337 | 427 | 91 | - | – | |
| MobiDBLite | 347 | 370 | 24 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi1g1v0784100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…