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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0787300 |
| Transcript ID | LotjaGi1g1v0787300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | U-box domain-containing protein; TAIR: AT3G07360.1 plant U-box 9; Swiss-Prot: sp|Q9SRT0|PUB9_ARATH U-box domain-containing protein 9; TrEMBL-Plants: tr|V7BRN2|V7BRN2_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0787300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:136004896..136008039) extracted from Lotus japonicus Gifu genome v1.2.
TTAATAAATGAATTAATTATTACTGTCGATCGTGAATACCGTGGTCTCGATGAATGAATAGTAAAATCAAACCGTCCCAT ATCGTTTACCACTTATTAATTATTACAACTACCCTAGTAAACGACGAACTAATTATTACTGTCGGCCGTGAATACCGTGG GGAGAATAGTAAAACCAAACCGTCCCTAGTTTTTGGTCAAACCAAACGGTGACTTTTTTCAATTCTTTAATGCACAACAC ACACTCCTTGGGCTTGGGTCGGTGGCTTCTTCTCTCACACTCTACGCGATTTCAATACTGTACTGCACTCCACTCACGTT GCCTATTGTTTTGTTTGCCACCCTATAAATTCTAATTCTCTCTCTCTCTCTCTCTCTAAAACAGAGGAAAGAAAGAAATT GAGAGGAAAGAAAATAAGAGAATGAATTGAATGGTGTGTTGTGAGAGTGAGTAGTGAGTGAGAGAGACACACACAGTGAG CGAGCGAGTGAGGTTTCATGGCGAAGAGAGACGGAGATGGCGGAGAAGGAGGAGGAGGAGCGGTTGCGGCGGCGGCGGAA TTGAAGGAGAAACTACGGGGATTGGTGAAGATGATTGTGGAGAGCGATGACTACACTGTTCAAACCGCTGATGATGCAAT CGCTACTCTCTCCGCTCTCAAGCTTCTCAAGAAGAACAAGACTCGAGAGAATCGAACTGCATCGTTCTCTGACAAATTCG ACCCTCCTACTGAATTTCGCTGCCCGATTTCTACCCAGTTGATGACTGATCCTGTTATCTTGTCCACTGGCCAGGTTTCT TTCCCTAATTTCATTTCCATTTCGCTTTCTTGCATTTCCATTCATCGTTGAAATGATAATCTTGTTTTTATTTGCTTTTT AGAACAGTGATGTTCAAATTGGATTGGATAATCAGAACCATCTTTGTTTTATTGATTAGTTGCAATTCTTTTACTGTGTT GTTGCTTGTTTGGAAATTGGATTTTTGTTTTATGTTGGTTCCTAATTGATGGGTGGAATAAGAAAATATTGTTTTACTTT CCATTGGGATGTTGGTTACTAATGCCATGTTGTGTATTTGGATTTTCGTCGAAGTCAACGAGGATGGATCCATGTTGAAA TCAATGTGGCAAAATATTGTTTCTCTGATCGACCGACGTGGCAAATTCTAGTTTCTCCGTTGACAAATTGGAATATGTGA AATCACGTTTGCGTTGGACCAACGTCAAACCGAACATATACTAATTACTTACCATTTACCAATCCCTGCTTAAAAATGTG TGTCTGTGTTAGTGAATTTAGGGTTTGGCTTGTTTGACATTACTCATTATTGTGTTCTAATTTCATGCTTGCTGTTGCAG ACTTATGATCGGCCATTTATTCAGAGGTGGTTGAATGAAGAAGGACACAGGACATGCCCTCAAACCCAGCAAGTCTTGTC TCACTCGATCCTTATTCCTAATTTTCTTGTTCGAGAAATGATTACGAAGTGGTGCAAGGACCGTGGAATTGAGATGCCAA AGCCTGTTCGGGATGTTGATGAAGCAGTGACCAAAGCGGATAGACACCGTTTAAATTCATTGCTTCATAAGTTGTCATTG TCTCTTTCTGATCAGAAAGAAGCTGCGAAAGAGCTTCGCCTCTTAACGAAGCGGATAGCTACGTTTCGAACCCTTTTTGG GGAGTCAGGTGTGATTGCACGGTTGCTCAGTCCGTTATCACCTGGCAGGACTTGTGCTGACCCTGATCTCCATGAGGACT TGATCACAACTGTTCTGAATCTCTCTATTAATGATGATAACAAAAAAGTGCTTGGAGAGGATCCAGCTGTCATTTCTCTG CTTATTGATGCCTTGAAGTCTGGAACCATTCAAACAAGAAGCAATGCTGCGGCGGCTTTTTTCTCCATATCAGCACTTGA TTCCAACAAGCACATCATTGGAAAATCTGGAGCTATCAAACATTTGATTGACCTTTTAGATGATGGACATCCATTAGCCG TGAAAGACGCTGCTTCAGCCATATTCAACATCTGTGTCATGCACGAGAACAAGGGGATCGCCGTGCAAGAAGGGGCTGTT CGGGTTATTATGAAGAAGATCAAGGACAACATTATAGTAGATGAACTGTTAGCCATACTGGCTCTCCTCTCCACTCATCC CAAGGCTGTTGAAGAAATGGGTGATCTAGGTCCTGTTCCTTTCTTACTGGGTAATATTAGAGAGACTACCTCAGAGCGAA GCAAGGAGAATTGTGTTGCAATGCTATATACAATCTGTTACAATGATAGAACAAAGTGGAAGGAAATTAGAGAAGACGAA AGGGTCAACGGCACACTGTCTAAGCTTGCACAGTGTGGAACTTCAAGGGCGAAAAGGAAGGCTAGTGGTATTCTTGAGAG GGTCAATAGATTTTTCTCCTTAACCCACACTGCTTGATGAATTTAAACCTTGGAAGTTAGAAAATCAAAATCAACCCCTT GTAAAGTAAGTTTCATGTGTTCTTCTGTACAGAACCACCTCAGGACAGGTAGCTGCTGTAAAAATGGGACAAGGTCACAT ATTTGTTATACATCTCCTGCATACTTTACCTTCAAATACAATCGGGCATGTAAATGGATGAGCTGAGTGTTTTATTTTCT TCTTTATTTGGTCTCTATTCTGGTAGTTAATTCCTTTTTAAAAAAGGATGCACATGTGGTACTATTTTCTCATTGCCCGT GATTGGTGTTTGATATCTGAATTTTGTGACTATTCATGGTTCCTAGACAACAATTTTGGGTGCTGACAAATTGTCTATCT TTTTTTTTTTTGATAAGCAACAAATTGTCTATCTGTATTTTTGTTAATGGGGCTTTTGCATTCATTCATTCTTGGTACCA TAGAGAAGGGACAACTAATCAAAACGTGAGGGTGGAAGTGGTGTGTTGTGTGTAGGGTCTCCTCCCTTTTGTTTTCTTTG AAGAGTGTCGGCACCTAGTTTATTGTTGCTATTTACCCAACTTTCTTTGTTTAAATTCTTCTATTTATGTGTTAATTTAC CAACTGGCTAGAATATTCAAAGTTGCTCAGTCATTCATACCTAACAATTCATATGACTAATAATGTTGTCTGCCTCTCTA TGGGAAAGAAACAGTTGGATTGGT
CDS sequence (LotjaGi1g1v0787300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGAAGAGAGACGGAGATGGCGGAGAAGGAGGAGGAGGAGCGGTTGCGGCGGCGGCGGAATTGAAGGAGAAACTACG GGGATTGGTGAAGATGATTGTGGAGAGCGATGACTACACTGTTCAAACCGCTGATGATGCAATCGCTACTCTCTCCGCTC TCAAGCTTCTCAAGAAGAACAAGACTCGAGAGAATCGAACTGCATCGTTCTCTGACAAATTCGACCCTCCTACTGAATTT CGCTGCCCGATTTCTACCCAGTTGATGACTGATCCTGTTATCTTGTCCACTGGCCAGACTTATGATCGGCCATTTATTCA GAGGTGGTTGAATGAAGAAGGACACAGGACATGCCCTCAAACCCAGCAAGTCTTGTCTCACTCGATCCTTATTCCTAATT TTCTTGTTCGAGAAATGATTACGAAGTGGTGCAAGGACCGTGGAATTGAGATGCCAAAGCCTGTTCGGGATGTTGATGAA GCAGTGACCAAAGCGGATAGACACCGTTTAAATTCATTGCTTCATAAGTTGTCATTGTCTCTTTCTGATCAGAAAGAAGC TGCGAAAGAGCTTCGCCTCTTAACGAAGCGGATAGCTACGTTTCGAACCCTTTTTGGGGAGTCAGGTGTGATTGCACGGT TGCTCAGTCCGTTATCACCTGGCAGGACTTGTGCTGACCCTGATCTCCATGAGGACTTGATCACAACTGTTCTGAATCTC TCTATTAATGATGATAACAAAAAAGTGCTTGGAGAGGATCCAGCTGTCATTTCTCTGCTTATTGATGCCTTGAAGTCTGG AACCATTCAAACAAGAAGCAATGCTGCGGCGGCTTTTTTCTCCATATCAGCACTTGATTCCAACAAGCACATCATTGGAA AATCTGGAGCTATCAAACATTTGATTGACCTTTTAGATGATGGACATCCATTAGCCGTGAAAGACGCTGCTTCAGCCATA TTCAACATCTGTGTCATGCACGAGAACAAGGGGATCGCCGTGCAAGAAGGGGCTGTTCGGGTTATTATGAAGAAGATCAA GGACAACATTATAGTAGATGAACTGTTAGCCATACTGGCTCTCCTCTCCACTCATCCCAAGGCTGTTGAAGAAATGGGTG ATCTAGGTCCTGTTCCTTTCTTACTGGGTAATATTAGAGAGACTACCTCAGAGCGAAGCAAGGAGAATTGTGTTGCAATG CTATATACAATCTGTTACAATGATAGAACAAAGTGGAAGGAAATTAGAGAAGACGAAAGGGTCAACGGCACACTGTCTAA GCTTGCACAGTGTGGAACTTCAAGGGCGAAAAGGAAGGCTAGTGGTATTCTTGAGAGGGTCAATAGATTTTTCTCCTTAA CCCACACTGCTTGA
Protein sequence (LotjaGi1g1v0787300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAKRDGDGGEGGGGAVAAAAELKEKLRGLVKMIVESDDYTVQTADDAIATLSALKLLKKNKTRENRTASFSDKFDPPTEF RCPISTQLMTDPVILSTGQTYDRPFIQRWLNEEGHRTCPQTQQVLSHSILIPNFLVREMITKWCKDRGIEMPKPVRDVDE AVTKADRHRLNSLLHKLSLSLSDQKEAAKELRLLTKRIATFRTLFGESGVIARLLSPLSPGRTCADPDLHEDLITTVLNL SINDDNKKVLGEDPAVISLLIDALKSGTIQTRSNAAAAFFSISALDSNKHIIGKSGAIKHLIDLLDDGHPLAVKDAASAI FNICVMHENKGIAVQEGAVRVIMKKIKDNIIVDELLAILALLSTHPKAVEEMGDLGPVPFLLGNIRETTSERSKENCVAM LYTICYNDRTKWKEIREDERVNGTLSKLAQCGTSRAKRKASGILERVNRFFSLTHTA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 16 | 452 | 437 | 1.5E-174 | – | |
| PANTHER | 16 | 452 | 437 | 1.5E-174 | – | |
| Gene3D | 55 | 153 | 99 | 1.2E-27 | ||
| SUPERFAMILY | 73 | 154 | 82 | 2.38E-28 | – | |
| ProSiteProfiles | 75 | 150 | 76 | 41.63 | ||
| Pfam | 77 | 147 | 71 | 3.7E-20 | ||
| SMART | 79 | 143 | 65 | 1.6E-29 | ||
| CDD | 80 | 123 | 44 | 1.3072E-23 | – | |
| Gene3D | 177 | 450 | 274 | 1.9E-28 | ||
| SUPERFAMILY | 180 | 446 | 267 | 2.85E-33 | ||
| SMART | 243 | 284 | 42 | 180.0 | ||
| SMART | 285 | 325 | 41 | 0.0055 | ||
| Pfam | 288 | 324 | 37 | 2.2E-6 | ||
| SMART | 365 | 406 | 42 | 440.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ubiquitin-protein transferase activity | Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Protein ubiquitination | The process in which one or more ubiquitin groups are added to a protein. |
Expression pattern of LotjaGi1g1v0787300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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