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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0791500 |
| Transcript ID | LotjaGi1g1v0791500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribonuclease 3-like protein 3; TAIR: AT3G03300.1 dicer-like 2; Swiss-Prot: sp|Q3EBC8|DCL2_ARATH Endoribonuclease Dicer homolog 2; TrEMBL-Plants: tr|A0A151TUM2|A0A151TUM2_CAJCA Endoribonuclease Dicer isogeny 2a; Found in the gene: LotjaGi1g1v0791500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:136355914..136362497) extracted from Lotus japonicus Gifu genome v1.2.
TTTCAAAACTTTAAAATCACATTACATGAATATATTTTATAACAAAAATTTCTCTACACACAGGACACAATTGTAGCTTT GACTAAAAACTAAAGAGCCAACTCCTTGCTCTGGTGCCCAGAAATTCAGGCGAGTGTATGGTACATAAGTGATATGGACC AATAATAATAATACATTTAATATGACATGGATAAGTTAGTGCTAAGTGTATATCATTCAAAAAATTTATGCTATAACCCC AGTACTTTTTACCTTACTAAATATGTCCCCCACTTTTTGTTTTACTTTACCCATCATCACAATATTCAATTCCAGAAAGC CAGAAACAGATCAATTCGATACACCATCAATGGCACACCTTCCTTTACTGTGTCAGCAAGCCACAAAAACGTCCTCCTCA GCCACCACATAATCAATAGAGCAACCACCCTTCAAAATGAGAACAGATAGCCCCTATCCCACTATCAGTACTTAGTAGCA TAACCAGAATTGTTACAAAGGTAAATGGAAAAAAGAGAATCATAGGCCCATCATATATCAAAACACTTGTGCAGCAAAGA AATAGGATTGGCCTCCTAATGTCTGCTAGCCAGCAACCTCACCTCCAACGCCCCAAATTTTGGAAGTTAAAATTCCAATA TAATCACTTCATGCAACCACTCTTTGATATACTGCTGCACCGTTTCATCGCTGTGGTTCGCAACCGCGAGATGCAGTGCA GCTTCCACTCCACCCATCCCAGATCCTTCTCAAGCAACTCCCCTGCTTTCGCTTCGACATACTGTAACGAAATCCCTTTT GCGTCGAACCCTAAAAGCTTCTCTGGATCCCAAATCGACGAATTCGAATACCCTACAAACCCAGATTTTCCAAAATCACG CACAGAGAATTAATGACCTGAAGAGAAGTGAAATCAATGAACTGGGACAAATTCAAATTAGAGTGGAACGCACCAAACCA CTGATGAATGGAAGAGAAGGGGAAGAAGGTGAACTCTGTATTCTTTGCACTTGATATGAGGACTAAAATTAAAATAAAGA TAACCTATGGGTTTGGTTCATAATTTGAATAATCCTACTCGGCTAATGTAGAATTTCAAGAAATCAGAAATAATATTTCC ACATGTTATTATTTCTATGGTACATGTCACTCCTGTACCAGACCCAAAAAAATTTTCCTGTACCACAGAAAATGCCCATC TAATAATTGTGCTATTGTCACTTTTGAAGCACATGTGAAACCGAACAGCATGATTCACTTCGAAAAAAATAATAGTAGAA AGACCATAATGTCCCTGAAATCATAATCCCACACCTTCCATCTTCTTTACTTTTCCGACTGACACAGCCGCGTCTTTCTC TCAGCTCCGGCACTGTTTTCACTTTGCTGGTGAGCGTTTAGGGTGGGGCGATGGTGGTTAGTAGGAGAAGGTAGTTGATC GCAGTGGGAGGGGGGATCGATGATGCAGCGCTGCTGCCGGCAAATGTGATGGTCGAAAAATAGGGAGCCACTTAACTAAA TGCGCGGTGGAGCTCCGCAGAGGTGCTGGTTACGACGGTAGCTGAGACTATGAGTGGAGATAAGCAAAGACTTCACGGTG CTATGGTGGCCGAAGATGAGTGGATGAAGGAAGCTATGGTGGTTCGGTTTTAACGCTTGGGATGGCGTGGTCGGAAGAGG AGACACTGCTGCGGAGGGAGTTGTTGACACTCTGGAGGAAGGAGGTGGCGGAGAATAAAAAGCTAGAAAGAGGGAGATTG TGGGTAAGGATAATATTGTAATTTCCTTTTTAAAATCTGATATAATTATGTCAAAATGAGGCTGGCAATTATCGAACTCT ACTTGGTCATAGAGATTCTGATGCATCTTGACAATCACTAGTCACGTTTTGTACTATGTGAAGCACTTGGTTAAAGTTTC ATAAAGGAGATGCAACATCAAATGAATCACTTTACTTTACTTGTTTACTCAGCCTTTTTTGTTCTGTGTGGAATCTAGTA CATAGTGGTCCCTGCAGGCACTTCCGTTGCTATAAGTTAGAACTAACTAAAATATTGATCAGAATATCAAAGTGTCATGA ACATGGAAGAATTCGGTAACTTCATTAGATTAAGATTCTTAGTTCTTTCCCTCTCTTTTTCTAATTGAAAGTTGATCTGA TTCTCATTTCTTCTTTTAAGTTATTTTTTTGATATTTTGAGTGTAGTTTGACAAATCTATTTGCTTTGTGCAGGAAAGAA TCAACCCAAATATGTCCCATCTGAACTGGTAAATTGTTCACCAAATACTTGCAATCCAACATACCATTGCTATTTGATAG AGTTGACGCAGGATTTTGAACATGACCTGTCGGTTCATGACATTTTGCTGGCATTGAGGAATGAACTTGACTCAGAAATC ACAGGCACACCAATTAAGTTGTGTGTTGACGGTGGAAACTTGTCAGTAAACCTCAGACATGTAGAACCGATTGATCTTAG TCCAGATGAGGTGTGCTTACATGTGCTGTTTACATGGTAGCTAGTGTCAAAGAAAATTGAGTGCTGGGTTATATATGTTT TGTATATTTTTATTTTACAGGTTCAAAATTGTAGAAGATTTCAGACCACTCTCTTTAGGATCCTTCTGAACAGGGAAGTG AATAAGTTAACAAGTGATTCGGATGATTTTAGTTTGGGAGATAATGCTGAAATTGATTATCTTCTGCTCCCAGCCATTCT TAAAGACCAGAGACCTTCAAATTCAATTATTGATTGGAAGTCTATTTCTTCTGTACCTTTTTCATCTGAGAGTACCTGTG AGTGTAAGGATCATACTCATTATGTGCGGACCAAAAATGGTATTGTTTGTTCTTGCAAACTTAAAAATTCTGTGGTCTTC ACTCCTGATAACGGTACAATTCATATCAATGGGGCAATGGAATTGAATGGAAACTCACGCCAGCAACACCAAAAAGGTAA GCGAGATACCACCGACAAGGAGGACTTCAAAATCGAGTAAGTAAATCTTGCAGCTCATTGTGTGTGTGCTAGTCTTATAA GTCACCCCCATTGGCCGCTATAAATAACTTGGGTTCTTGTTTGAAAATTTCAGCCCCAAGATTGAATTGCAGAAATCCCT ACTTCGTGGAAGGGGGGGTGTTTTTAACGTTAAAAATTACCTTCTGAAAGGCAATAGAAAGAAGCTGAAAGGTTTAGATC TAATTGACCATTGGTAGCTTATATTATATCTCCTAGATCAACATAATGCAACTTGATTGATTCTTTCTTTCATTTTTTGA TGCACTTCTAGGACCAAGCATAGATTACCCTTGTCAATTGCCCCCAGAGCTTTGTGATATAATCATGTCACCAATAGCAA TCAATACCATATATTCATTTTCATTCATTCCATCAATCATGCATCGGGTCGAGTCCTTGCTCGTTGCCTTCAAATTAAAA AAGTTGCTCCTGGATCATTGCGTGCAAAATGTTGTCCCAATCTGCAAGGTATACCTCTAAAAAATGCTTAACATTAAGGT AGATAATTTTATGTTTCTTTAATAGTTATTCAATGTTAAAGTGGATTCTTACAATTGTTAAATATAGAATATCTGTTGAT AGAACATCTGAATATGTACCTGTAAGAAGTACAATATATACATGTTAAAATATCAACAACTGTGTTTCATTTGTTTTTTG ACAAGCATTAGAACTGCTCATACAGGTGTTGGAAGCAATTACTACAAAGGAATGTCAAGAGGCCTTTGATTATGATTCCC TAGAGACACTCGGAGATTCTTTTCTAAAGTACATCACTACCCAACATCTTTTCAAAACACACCAAAATCTTAGTGAGGGT GATCTTTCTGAAAAGAGGAAGCAGTTGATTTCCAATGATGTCTTGTTTAAGTATGGCTGTAGGCGCGGACTACCTGTAAT TTCCCCCCCTTTATTTTTGCATCTATGACCTTGGGAGAATATAAATAGTTTAAATTTTCTACTATGGTTTAAAATTTTCT AGTAATGGTTAAAAAAATTCTTTTCATATTGCAGGGTTTTATAAGAAAAGGAATTTTTGAACCACAACAGTGGCTTATAC CTGGCGAGAAGTCAGAGAATAACTTGCTAAAAGAAGAGTTGGTTAATGGAGTAAAGCCGAAGGTGGTTGCTGATGTTGTT GAGGCACTAATTGGTGCCTTCCTTAGCACAGGAGATAAAGAAGCAGCTTTATCGTTTATTAATTGGATTGGAATCGAGGT TGACATGAACATCATACCATATGAGAGACACCTTAGTTTTGTCGCGGAGAAGCTTGTAAGAGTCAACCATTTAGAATCCC TGTTAAACTACTCATTCCAAGACCCTTCCCTTTTAGTAGAAGCTCTGACACATGGTTCTTGCAATCGGACAGAATTTCCA AAGGCTTTTAATTATCAGGTACTTTGGAGGTTATGTAGATACTTGTAGTAAAAATGATGTGATATTATGGGAATTTGTTA AGATTGATATATATAAAATTTGATTTAGCAATTCATGAGTTGCATCATGGAGATAATCTAAATTAAGTAGTGATAAGTAA ATGTGTATAATGGAACTTCCTTGGTTTTTTTATCTAGCGGTACGGTTGAAATTATAGGATCATAGTACGGTTGAAATTAT AGGATCAAATTCTTCTGTCTCTGTTTGGTGTCCCCTTCCTTGTCTCATCAATATGATTGTGACATGTCATTTAAAAATCA CTCATGTTAGGTTATTACTCTTATATTATAGACTGAGAACCTGTAGGTTATTGTGTCTATGATTTTCAATTCTTTTTCTT GCTACCTGAGTTTTTGCTACTAATTTTTCCCTGCAGAGACTAGAGTTTCTTGGCGATGCAGTGTTGGACTATGTGATCAC GATGTATTTCTACAATGAATATCCTGTTCATTTGTTGTCTGCAAAGTTTTTAACTATCATGAGGTCTATTTCTGTGAACA ATGAGTGTTACGCGCTGTCAGCCATTAAAGCTAAGCTGAATGAACACGTTCTCTGTGACTCTGGGGTAGAAAAGCTTATT GCAGTCACTATGAAAGGTGTTGAGAATTTATCTTTGGAATCAAGTTTTGGATGGGAGTTAGAAACATATTTCTCTCAGGT CAGTTTTTATTACTGCAATACTTATACGTACTACTGCCGTATTATTGACTCTTGAGTCTCTTCATTATCAATATCACAGT TTAATATAGACATGGCCTTTACCCTTTAAGGTTACAATTGACAAAGGGAATGAATTCACACTTGGCAATTGACATTTTTT TCAATGCTTTTCATTTTATGTATATTCTACTTCTGACAGGTACTTGCAGATGTTATAGAATCTATAGCAGGAGCGATTTT TGTTGATTCAGGGTACAAGGAAGATGTTGTTTTCCAAAGCATAAGGCCTTTTTTGGAACCCCTGGTTACACCTGAAACAG CAAAACGACATCCTATTCAGGAGTTGACAGAGTTATGCCAAAAAGAACATTATGAAATGAAAGAAACCATTTTCCCCGAC CCCCATGACAAAGATACAATCCAGGAGAAAGTTAAACGGATCTATTACGAGCACACTAAGAAAGCTGCTAATAAGGATAT AGCACGAAAAGTTGCCTCCAAGGAAGTTCTAAAACTCTTGAACTCTTGATGAAGGTAACCAATTCAAAGTGTTTAATGAT CAGCAAGAAATTTTTATTCCCTTTACTTTCTGCAGTCTTTTTGTTCTGTTGGTTTGTAAATGAAATAACTTATCTTGTAA TATGCATGGGGATTGGGGAATACATCCTCTAACATGAGATGACAATGTTAAACTGAAATTTTGTATCTCTTTTTCATAAA TATTCAGAGTCCCACCTATTTATGATATACATGAAAAGGGAGATAGCCAACCTGTGTTCTCTGGAGGGTTACAAGTGCTA GATTCTTCTAAAGGAATGCAGTGGAGGGTTTTTGAAGAGGAGTGATCTTATATAAAGGCGTCCATACCAAATCAAGTGTA GGGTTTCATCATTTTTTTCCCAATCTCTCAGTCATGTTAAGAACATAGCACATTAAACATCCTTTTTTTAACATCTAATT ACACATCTTATCTTTATTTTTCTTTTAAAAGATGTGTAATTAGTAAAATGTGGTCGTTACTCATCTCGTTCCTGATCTAT GAGGTCGTAGTTCATGATAATGAAACACATTCCGTGTTCATTCATTTATCGTTCGGTGCGAACATCCGTAGTGAGAGAAC TAGTAACTGCTATTGGTAGTGAATATGTATCCTGATCTAAACAATAAATATAATCTTATTTTTTGTGAAGAGCACCAGGT CAAGTAAAATGTCATGTAGATTATAACCTAATGCATAGATCATTTGACATGAGGTTGTTCAAGTTTAAGAAGAGATCTTG GGTTCGAATCTCTCTGAATGCAACTGCGTTAATACTTGGAGGGAAAGCTTTTACCAAAGATTGTGTTAGTCTAGCAGTAA CCAAATCAATTCTTTAAGAATGAAAACTATCCTTAGAGGAGTCATTTGTTGGAAAATACAACTGAGACACTTGTGAAGGT TAAAAAAAAGTTCAAAAATGCAAT
CDS sequence (LotjaGi1g1v0791500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACATGGAAGAATTCGGAAAGAATCAACCCAAATATGTCCCATCTGAACTGGTAAATTGTTCACCAAATACTTGCAA TCCAACATACCATTGCTATTTGATAGAGTTGACGCAGGATTTTGAACATGACCTGTCGGTTCATGACATTTTGCTGGCAT TGAGGAATGAACTTGACTCAGAAATCACAGGCACACCAATTAAGTTGTGTGTTGACGGTGGAAACTTGTCAGTAAACCTC AGACATGTAGAACCGATTGATCTTAGTCCAGATGAGGTTCAAAATTGTAGAAGATTTCAGACCACTCTCTTTAGGATCCT TCTGAACAGGGAAGTGAATAAGTTAACAAGTGATTCGGATGATTTTAGTTTGGGAGATAATGCTGAAATTGATTATCTTC TGCTCCCAGCCATTCTTAAAGACCAGAGACCTTCAAATTCAATTATTGATTGGAAGTCTATTTCTTCTGTACCTTTTTCA TCTGAGAGTACCTGTGAGTGTAAGGATCATACTCATTATGTGCGGACCAAAAATGGTATTGTTTGTTCTTGCAAACTTAA AAATTCTGTGGTCTTCACTCCTGATAACGGTACAATTCATATCAATGGGGCAATGGAATTGAATGGAAACTCACGCCAGC AACACCAAAAAGGTAAGCGAGATACCACCGACAAGGAGGACTTCAAAATCGACCCCAAGATTGAATTGCAGAAATCCCTA CTTCGTGGAAGGGGGGGTGTTTTTAACGTTAAAAATTACCTTCTGAAAGGCAATAGAAAGAAGCTGAAAGGACCAAGCAT AGATTACCCTTGTCAATTGCCCCCAGAGCTTTGTGATATAATCATGTCACCAATAGCAATCAATACCATATATTCATTTT CATTCATTCCATCAATCATGCATCGGGTCGAGTCCTTGCTCGTTGCCTTCAAATTAAAAAAGTTGCTCCTGGATCATTGC GTGCAAAATGTTGTCCCAATCTGCAAGGTGTTGGAAGCAATTACTACAAAGGAATGTCAAGAGGCCTTTGATTATGATTC CCTAGAGACACTCGGAGATTCTTTTCTAAAGTACATCACTACCCAACATCTTTTCAAAACACACCAAAATCTTAGTGAGG GTGATCTTTCTGAAAAGAGGAAGCAGTTGATTTCCAATGATGTCTTGTTTAAGTATGGCTGTAGGCGCGGACTACCTGGT TTTATAAGAAAAGGAATTTTTGAACCACAACAGTGGCTTATACCTGGCGAGAAGTCAGAGAATAACTTGCTAAAAGAAGA GTTGGTTAATGGAGTAAAGCCGAAGGTGGTTGCTGATGTTGTTGAGGCACTAATTGGTGCCTTCCTTAGCACAGGAGATA AAGAAGCAGCTTTATCGTTTATTAATTGGATTGGAATCGAGGTTGACATGAACATCATACCATATGAGAGACACCTTAGT TTTGTCGCGGAGAAGCTTGTAAGAGTCAACCATTTAGAATCCCTGTTAAACTACTCATTCCAAGACCCTTCCCTTTTAGT AGAAGCTCTGACACATGGTTCTTGCAATCGGACAGAATTTCCAAAGGCTTTTAATTATCAGAGACTAGAGTTTCTTGGCG ATGCAGTGTTGGACTATGTGATCACGATGTATTTCTACAATGAATATCCTGTTCATTTGTTGTCTGCAAAGTTTTTAACT ATCATGAGGTCTATTTCTGTGAACAATGAGTGTTACGCGCTGTCAGCCATTAAAGCTAAGCTGAATGAACACGTTCTCTG TGACTCTGGGGTAGAAAAGCTTATTGCAGTCACTATGAAAGGTGTTGAGAATTTATCTTTGGAATCAAGTTTTGGATGGG AGTTAGAAACATATTTCTCTCAGGTACTTGCAGATGTTATAGAATCTATAGCAGGAGCGATTTTTGTTGATTCAGGGTAC AAGGAAGATGTTGTTTTCCAAAGCATAAGGCCTTTTTTGGAACCCCTGGTTACACCTGAAACAGCAAAACGACATCCTAT TCAGGAGTTGACAGAGTTATGCCAAAAAGAACATTATGAAATGAAAGAAACCATTTTCCCCGACCCCCATGACAAAGATA CAATCCAGGAGAAAGTTAAACGGATCTATTACGAGCACACTAAGAAAGCTGCTAATAAGGATATAGCACGAAAAGTTGCC TCCAAGGAAGTTCTAAAACTCTTGAACTCTTGA
Protein sequence (LotjaGi1g1v0791500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNMEEFGKNQPKYVPSELVNCSPNTCNPTYHCYLIELTQDFEHDLSVHDILLALRNELDSEITGTPIKLCVDGGNLSVNL RHVEPIDLSPDEVQNCRRFQTTLFRILLNREVNKLTSDSDDFSLGDNAEIDYLLLPAILKDQRPSNSIIDWKSISSVPFS SESTCECKDHTHYVRTKNGIVCSCKLKNSVVFTPDNGTIHINGAMELNGNSRQQHQKGKRDTTDKEDFKIDPKIELQKSL LRGRGGVFNVKNYLLKGNRKKLKGPSIDYPCQLPPELCDIIMSPIAINTIYSFSFIPSIMHRVESLLVAFKLKKLLLDHC VQNVVPICKVLEAITTKECQEAFDYDSLETLGDSFLKYITTQHLFKTHQNLSEGDLSEKRKQLISNDVLFKYGCRRGLPG FIRKGIFEPQQWLIPGEKSENNLLKEELVNGVKPKVVADVVEALIGAFLSTGDKEAALSFINWIGIEVDMNIIPYERHLS FVAEKLVRVNHLESLLNYSFQDPSLLVEALTHGSCNRTEFPKAFNYQRLEFLGDAVLDYVITMYFYNEYPVHLLSAKFLT IMRSISVNNECYALSAIKAKLNEHVLCDSGVEKLIAVTMKGVENLSLESSFGWELETYFSQVLADVIESIAGAIFVDSGY KEDVVFQSIRPFLEPLVTPETAKRHPIQELTELCQKEHYEMKETIFPDPHDKDTIQEKVKRIYYEHTKKAANKDIARKVA SKEVLKLLNS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 25 | 729 | 705 | 6.3E-148 | – | |
| PANTHER | 25 | 729 | 705 | 6.3E-148 | – | |
| MobiDBLite | 205 | 226 | 22 | - | – | |
| SUPERFAMILY | 326 | 472 | 147 | 1.66E-30 | ||
| SMART | 328 | 473 | 146 | 3.8E-26 | ||
| Gene3D | 329 | 466 | 138 | 1.6E-29 | ||
| CDD | 331 | 469 | 139 | 4.55325E-30 | ||
| ProSiteProfiles | 332 | 453 | 122 | 22.754 | ||
| Pfam | 347 | 451 | 105 | 3.5E-24 | ||
| Gene3D | 479 | 662 | 184 | 1.7E-41 | ||
| ProSiteProfiles | 489 | 639 | 151 | 25.93 | ||
| SUPERFAMILY | 489 | 658 | 170 | 2.96E-34 | ||
| SMART | 504 | 662 | 159 | 3.4E-23 | ||
| CDD | 504 | 661 | 158 | 4.72759E-31 | ||
| ProSitePatterns | 527 | 535 | 9 | - | ||
| Pfam | 527 | 639 | 113 | 4.9E-13 | ||
| SUPERFAMILY | 621 | 728 | 108 | 1.08E-5 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ribonuclease III activity | Catalysis of the endonucleolytic cleavage of RNA with 5'-phosphomonoesters and 3'-OH termini; makes two staggered cuts in both strands of dsRNA, leaving a 3' overhang of 2 nt. | ||
| Biological process | RNA processing | Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. |
Expression pattern of LotjaGi1g1v0791500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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