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LotjaGi1g1v0801100.4

Overview

Field Value
Gene ID LotjaGi1g1v0801100
Transcript ID LotjaGi1g1v0801100.4
Related isoforms 4
Lotus japonicus genome version Gifu v1.2
Description 1-deoxy-D-xylulose 5-phosphate synthase 1; TAIR: AT5G50850.1 Transketolase family protein; Swiss-Prot: sp|Q6Z1G7|ODPB1_ORYSJ Pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial; TrEMBL-Plants: tr|I1JJD2|I1JJD2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0801100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:137158000..137162520) extracted from Lotus japonicus Gifu genome v1.2.

ATGTGGGGTGTTACAAGGCTCAAGGTACGATTGGTTGTTATCTCATTCATATTATGTGTGCTTCCATTTCACGTAATCGC TTCTATTCGCAGACTATCCGCCCTGCTTTCTCTTCACTCAGACAATTCTCTTCCGTCGCCAAAGAGGTTTTGCTGCTTTC TTCCATCCTTTTCTCATCAAACTCACCCCATTCTCTTTTCAAAATTTGGTTCACTCGTTTCCATTTTGTCAGATGACAGT GAGAGAGGCTCTCAACTCCGCACTTGATGAGGAAATGTCAGCAGATCCTAAAGTCTTCTTGATGGGTGAAGAGGTCATTC AATTGTCCCATTTATATAACACTGATTTTTTTAACCAAAAAAATGTCTATTTCTTACTTCATTTTTTGGTGTATTAAAGT GCAGGTTGGAGAATATCAGGGTGCATACAAGGTTAGTTCTGGGTTTCCAGTTGTTGGTGCTATTTCTTTGCTAGCTGTGA ATTTCAAAATTTGATTTACTATTATCTGTTAATCTGCTTTCGTCTTTCATTGTAGATAACCAAGGGTCTGTTGGAGAAGT ATGGCCCTGAGAGGGTTCTTGATACTCCAATCACTGAGGTTCTTTTCTTACCTCACCCCAAGCACAATTTTTTTTTTCCC ACAAAGAACTTCATGATATTGTGTTTTCAATTAAAACTGCTAGCATTAGTGTTAGATGTATAGGGTAAACCATTCACATG TCATCCAATAAAGTAAACAAATTGAATTTTTTAATAATGTGGTGGCATGGATATGCATTCCTTGGATATAAGCATAGGCT GTTATGTTAGGCTTCCTTCTTCATGTTGATCTGCTTTTAACTTTCTGCAATGGATTTCTTATTGAATGTGAAAATTAACT TTTCCTGCCTCTTAACTCAACTTAAATTGATACTTCAATAGTGTTTGATTACATTTTCAACATCGTGTGTGGTGTTTTAC ATACTTTAAATTTACACTAATAGATAAACTATTTTAACTGATAATTCCTCGAAAAAAGAACAGGATTTATAGTTGGTAGC TGCGGTTTGCTTGGGGTTATTTATTTGCTTAAATATACTGCAGGCTGGGTTTACTGGGATTGGAGTTGGCGCTGCTTACT ATGGTCTAAGACCTGTCGTGGAGTTTATGACATTTAACTTCTCCATGCAGGTTAGAGTTGATCTTGATTGCATTCTTTCT TCCTTAAACTGAATATGCAGTTATGTGGTTTAATTTACTTTTTTAACCACTGCTCAAGTAATGTAATGTTATGTCTTGTA AAGTTGGCTGTGCTTGAAGATCATTAGATGGAAATGGCATCTTATCTTATGAGTGCTATCTTCTTTCTGATAAAAACACT AAGGTTATGAAGCTACCAGCAAATGATTCTTAATTCCACAAGGATAGATGTTGATTCCCTGTCTGTTGATTGACATATAC CATGTTTTCTATCATGGTGTGGTCAACCCCGGAGTTGCTATAATGGCAAACACTATGGGTCACTTTGTTTTAGAGTTAAG TAAAAGTAAATTTGATAAAAGTAAGTTTAATGAAAGTAAGTGTAATATAATGAAGTTTAAAAAAATGAATTTGTGTTTGG AAATGAAGTATAAAAGTAAGTTTAAAAAAAGGAATGTTGGAACTCATTGGTCCCTTGAACATTGAAATACTAAGATTGTG AAGAATTTTGTGTCAACATGTGTGATGACATTTAGTTTTGGGTTTCATTTGTTTAGTAAACAGCTGCATCATCTTGTCTT ATTAACTTCCCCATCTATTTTATCCCACTTATTGTCTTATTTTATATTAACTTGTTTTGCAGGCAATAGATCACATTATT AATTCTGCTGCAAAATCAAACTACATGTCTGCTGGGCAAATAAATGTACCTATTGTCTTTAGAGGACCCAATGGTGCTGC TGCTGGGGTTGGTGCTCAACACTCTCAGGTATGGTTGTCCAAACTTTCTTCCTATGTGTGAACACTTTCTTGAGCTATTT GTTTGCATTTCCCTTTGAATCTTACTTCAGTTATGACCTATTGTGCACAGATAGTTTAGGTTTTCTCTCTTTGTGTGACT CAACTATGCTTTTATGCAGTGTTATGCATCTTGGTATGGCTCTTGCCCTGGGTTGAAAGTGCTATCACCATACTCATCTG AAGATGCTCGTGGTTTGCTTAAAGCAGCTATAAGGGACCCTGATCCTGTAGTTTTCCTTGAAAATGAGTTGTTGTAAGTT GTGCTGCTTGAATAGTACGTAAAATGAGCAGTAAAAATTTCAAACATAATTTATTTGTTATAAAAAGTATTGTATTTGAT GAGCTATGTCTTCTAGATACGGTGAGTCTTTCCCAGTTTCGGCCGAAGTTCTTGATTCCAGTTTTTGCCTTCCCATAGGA AAAGCAAAGGTAATTAATTATCTGTAATATGAAATACGCCGTGCTTATGGTTGTTAGAGTCACACTGGTTATGCATTAAT GCTTTCTAATTGTATCCTTGTTTTTTTTTTTTTTGAAATATATTCTTATTGTATCCTTGTTTGCTTCATGAATTTATCTC TTGACAGATTGAGAGAGAAGGAAAAGATGTTACTATTACAGCCTTTTCAAAAATGGTTGGTTATGCTCTCAAGGTTTGTT TCACCCCAAGTTACTTCTGTAAACTAGATATTTATTGTTTGCTTTCAATTTATCTTTTGCTGTGACGTATTTGAAATAGA TCTAGGTTTGTATTGCATTTAAATTTAAATATTAAACAGTGTTATCAATGGCGTATGGCGGTCCATGGTGTAAAGCCAAA GAAACGCCATAAAAATATGGCGGACGCGGGACGCCATGGCGGCCTATGGGGGAACTGGGAAGCATGGCAGCCATAGTAAA AATAATATAATATACATACAAAAGCCTATAAAACAAGCAGAATTAATAATAATAATAATAAACTAGTATTCTCTTCCTTC ATACAGTATTAATTTGCACAATAATTGCATACAGCATCATTAGTATTATCTTCTTTGTTTCCACCCTGGGTCAGTTTTGT TATTCCTTGAAGAAGCTTGTGATGAAGCTCTATCAATTGCCATGTTAAGGAGAGAAATAAAAACAGGGTCTAAATCAGGA AGAAAAATGGTAAAGGGTCAAGACAAATAAAACAGAAATAAACGTTGAGGCTCGGTTGAGAGTGCCGGAGATGATCTGCC GGACTTGTCGCTAGAGAGGGAGGGAGCTTGATGGCGAGGATGAGGTGTTGGAGAGGCAGAAAGAAACAGCCTTTGAAGTT GGAATGAGAAAGAAGAAGAATAGAAGCTGGGCTGCTTCTAAAGTTAGGGTTTTGAGTGGTTTGTATGGGCTGGATCATAC GACCCATTTGGGATTATTTTTTATGGGTTTTGGCTCCAAGGACCTAAAAATCTTCAATGGGCTCCATCCACCATGCATAT GGCGGCCACCATAGTCCGCCATGCACTTTTCATGGCGGTCCGCTGTAAAACTGCCACGGCATACCGCCACAGCGACACCA TGGCCTCCATTTGACAACACGGATATTAATTAAATAATTAAATAATAAGAGAAGAAACCAAAATAATAATAACAAAACAA TAGTAAGAGACATGGGGAAAGTAATTTTTTTGGATGGGTTTGTTATGTGGTGGAGTAATTTATTATTTTGTAAGGACAAA TCAGAATTTGTGTCCTCCCAAAGAGAATAGCATTTATTAATGAAACATTTACAAATAACTATTTTTCTTGGTGTTTAGGC TGCTGAGATACTAGCCAAGGAAGGAATCAGTGCCGAGGTAGGCCTTGCAATAGTTAAGGATGAATTTCCCTCCTGTATGC AAAACTTCATTTTAGTATGATAATGGTGAGTGATTTTATCATATAGGTTATCAATTTGCGTTCGATCCGGCCGCTTGATC GATCCACAATCAATACTTCTGTCAGGAAAACCAACAGACTGGTGACAGTTGAGGAGGGGTTTCCTCAGCATGGTGTTGGT GCTGAAATCTGGTTGATCTCTTTACATTGACCTTTTTGTTTCTTTTTTGTTAACTCTTGGAAATTATGTAAAGTTAACTC TTTTCTTGAGCAGCACATCTGTCATTGAAGAGAGTTTTGGTTATCTTGATGCACCGGTTGAGAGAATTGCTGGGGCTGAT GTTCCCATGCCTTATGCAGCAAATCTGGAGAGGATGGCTGTTCCACAGGTAATGCTTCTTTAATATTGCTTTATTTTCTA ACCCAATTTGGAAGACCTGTTATTGTAATCTGCAAATTGATAAAAGAATATCTGTTTTGAATGGGTGTATTAAAGCCCTG AGATGATGGCTTTGTAAGAATTGAGTTTTGTATCTGATGAAAAATCAGATGTCAAGTTGAAGGTTTTAATACATTTTTAT ACTGTATAGATCATTTAAATCTGGCTACTTACTCGTATATGTGGATGTACAGGTTGAAGATATTGTTCGTGCTGCAAAAA GAGCATGCTACAGATCTGTGCCTTTGGCTGCAGCTGCTTGA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0801100.4) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTGGGGTGTTACAAGGCTCAAGACTATCCGCCCTGCTTTCTCTTCACTCAGACAATTCTCTTCCGTCGCCAAAGAGAT GACAGTGAGAGAGGCTCTCAACTCCGCACTTGATGAGGAAATGTCAGCAGATCCTAAAGTCTTCTTGATGGGTGAAGAGG TTGGAGAATATCAGGGTGCATACAAGATAACCAAGGGTCTGTTGGAGAAGTATGGCCCTGAGAGGGTTCTTGATACTCCA ATCACTGAGGCTGGGTTTACTGGGATTGGAGTTGGCGCTGCTTACTATGGTCTAAGACCTGTCGTGGAGTTTATGACATT TAACTTCTCCATGCAGGCAATAGATCACATTATTAATTCTGCTGCAAAATCAAACTACATGTCTGCTGGGCAAATAAATG TACCTATTGTCTTTAGAGGACCCAATGGTGCTGCTGCTGGGGTTGGTGCTCAACACTCTCAGTGTTATGCATCTTGGTAT GGCTCTTGCCCTGGGTTGAAAGTGCTATCACCATACTCATCTGAAGATGCTCGTGGTTTGCTTAAAGCAGCTATAAGGGA CCCTGATCCTGTAGTTTTCCTTGAAAATGAGTTGTTATACGGTGAGTCTTTCCCAGTTTCGGCCGAAGTTCTTGATTCCA GTTTTTGCCTTCCCATAGGAAAAGCAAAGATTGAGAGAGAAGGAAAAGATGTTACTATTACAGCCTTTTCAAAAATGGTT GGTTATGCTCTCAAGGCTGCTGAGATACTAGCCAAGGAAGGAATCAGTGCCGAGGTTATCAATTTGCGTTCGATCCGGCC GCTTGATCGATCCACAATCAATACTTCTGTCAGGAAAACCAACAGACTGGTGACAGTTGAGGAGGGGTTTCCTCACACAT CTGTCATTGAAGAGAGTTTTGGTTATCTTGATGCACCGGTTGAGAGAATTGCTGGGGCTGATGTTCCCATGCCTTATGCA GCAAATCTGGAGAGGATGGCTGTTCCACAGGTTGAAGATATTGTTCGTGCTGCAAAAAGAGCATGCTACAGATCTGTGCC TTTGGCTGCAGCTGCTTGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0801100.4) extracted from Lotus japonicus Gifu v1.2 Proteins.

MWGVTRLKTIRPAFSSLRQFSSVAKEMTVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKITKGLLEKYGPERVLDTP ITEAGFTGIGVGAAYYGLRPVVEFMTFNFSMQAIDHIINSAAKSNYMSAGQINVPIVFRGPNGAAAGVGAQHSQCYASWY GSCPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKMV GYALKAAEILAKEGISAEVINLRSIRPLDRSTINTSVRKTNRLVTVEEGFPHTSVIEESFGYLDAPVERIAGADVPMPYA ANLERMAVPQVEDIVRAAKRACYRSVPLAAAA
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11624:SF99
7 351 345 2.2E-225 –
PANTHER
PTHR11624
7 351 345 2.2E-225
IPR027110
SUPERFAMILY
SSF52518
25 206 182 3.11E-66
IPR029061
Gene3D
G3DSA:3.40.50.970
26 218 193 6.3E-85 –
Pfam
PF02779
26 201 176 9.3E-46
IPR005475
SMART
SM00861
27 202 176 3.3E-62
IPR005475
CDD
cd07036
31 197 167 5.83378E-110 –
SUPERFAMILY
SSF52922
217 341 125 3.8E-38
IPR009014
Gene3D
G3DSA:3.40.50.920
219 342 124 4.4E-43
IPR009014
Pfam
PF02780
220 334 115 5.5E-35
IPR033248

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0004739
Molecular function Pyruvate dehydrogenase (acetyl-transferring) activity Catalysis of the reaction: pyruvate + lipoamide = S-acetyldihydrolipoamide + CO2.
Subterm of
GO:0006086
Biological process Acetyl-CoA biosynthetic process from pyruvate The chemical reactions and pathways resulting in the formation of acetyl-CoA from pyruvate.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0801100.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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