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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0021400 |
| Transcript ID | LotjaGi2g1v0021400.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing family protein; TAIR: AT2G35030.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|O64766|PP185_ARATH Pentatricopeptide repeat-containing protein At2g35030, mitochondrial; TrEMBL-Plants: tr|A0A1J7IQC4|A0A1J7IQC4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0021400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:7687482..7691002) extracted from Lotus japonicus Gifu genome v1.2.
TGGGAGTAAGAAGTGCCTACCTGTTTCTCAAAAAGAGTGTTTTCTCAAAAAGTGTCACATTACACGAAAGTCCACACCGC CAAACCCACAATTCTCAATCTGAATTCTCGTTTCTCAGAACAAAGCCAAGCCACCGCTTGCTCGCTCCGCCACCACCACC GCCGCCGCGCATCATCGCCAGTTACTGACTCGTTAGCCCTCTATTTCATCCTTCTCTTAACATCTCTGCTACCATTCAAG GATGAAGAAGCTACCTCCATTATCATTCATTTTGATGCACGCTCCCAAGCTCAAGACACACCCAACCTTTATCATAAATG GCTACCCATTCCTTAGGACCATGTCAACATCCACGTCCAGTCTCCATTCTGCAATGAAGGACTGCAATACATCCATCTCA AGGCTTTGCCAGGAAGGGAGAATCGATGATGCACGCAAGCTGTTTGATCGAATGCCTGAACGGGACTTGCATTTGTGGGG TACAATGATAAATGGGTATATCATGTGTGGCGTGATTAAGGAAGCCAGGAAGCTGTTTGATGGACCGGATGCCATGAAAG ATGTGGTTACTTGGACTGCGTTGGTTAACGGCTACGTCAAGCTCAATCAGATTGAGGAAGCTGAGAGGTTGTTTTATGAG ATGCCAGAGAGAAATGTTCGTTCTTGGAACACAATGATTGATGGGTATGCACGAAATGGCCAAACCGAGAAGGCTTTGGA TTTGTTTAGGAGAATGCCGGAGAGGAATGTAGTTTCTTGGAATACAATCATAAAGGCCCTGTCAGAGTGTGGGAGGATTG AGGATGCACAATGGCATTTTAATCAGATGCGGGAAAGGGATGTGAAATCTTGGACTACCATGGTTGATGGTTTGGCAATA AATGGGAGAGTTGATGATGCTCGAGAGCTTTTTGATAGGATGCCGGTTAGAAATGTGGTTTCTTGGAATGTGATGATTAA GGGTTATGCTAAAAATAGGAGGTTGGATGAGGCTTTGGAGTTGTTTGAGAGGATGCCTGAGAGAGACATGCCTTCATGGA ATACATTGGTCACAGGGTTCATTCAAAATGGAGACTTAAACAGGGCAGAGAAGTTATTTCATGAAATGCCACAAAAGAAT GTGATCACTTGGACTGCGATGATGACAGGCTATGTCCAACATGGTCTAAGTGAAGAAGCATTGAAAATATTTAACAAATT GCAAGCTGATCATGCATTAAAACCCAACACTGGCACTTTTGTGACCGTATTAGGTGCTTGTAGTGACTTAGCTGGTCTAA CCGAGGGCCAACAAATTCATCAATTAATAAGTAAAACAGTTTTTCAGGAGAGCACATATGTGGTGTCGGCGCTGATAAAT ATGTACTCAAAATGTGGGGAGCTACATATTGCTAGGAGGATTTTTGATGAAGGGTTATTAAGGCAAAGGGATTTGATATC TTGGAATGGTATGATTGCCGCCTATGCGCACCATGGATATGGCAAAGAGGCAATTAATCTATTTAATAAAATGCAAGAAT TGGGTTTCCAAGCTAATGATGTCACCTATGTTGAACTTCTCACAGCTTGCAGTCATGCTGGATTAGTTGAGGAGGGGCTT CAGTACTTTGATAGGCTTCTGAAAAACAGATCTATACAAGTCAGAGAAGATCACTATGCATGTCTGGTTGATCTTTGTGG TCGTGCAGGAAGACTAAAAGAAGCTTTCAATATAATTGAGGGGCTTGGGGTAGACTTATCATTGTCTGTTTGGGGACCAC TCCTTGCTGGCTGTAATGTGCATGGAAATGCTGATATTGGCAAGCTTGTAGCTAAGAAAATTTTGAAAATTGAACCCGAA AATGCAGGCACTTATTCATTACTCTCAAATATGTATGCCTCAGTAGGGAAGTGGAAAGAAGCTGCCAATGTAAGGATGAA AATGAAGGACAAGGGGTTAAAAAAACAGCCAGGCTGTAGCTGGGTTGAAGTTGGTAATACAGTGCAAGTATTTGTAGTTG GTGATAAGTCCCATTCTCAATCGGAGTTGCTAGGATATTTACTACTTGATCTACATACAAAAATGAAGAAGTCTAGGGAC AGTCTAGATGATGATTTATCACTTGATGTCGAACTTTAATGGCATAATTCTGTGTTGGCCTGAGCGTGCATTGTCCGTGG GAGTTGAAATGTGTGAAAGTTTACTGCTGCTGGTACCTCAAACTTTTAACTTTCTATGGCTGCATTATCTAATTGTTAGG TGTAATTTAGTCTCTCCTCTTCACAAAAAACTCAGTAACGTGCAAACTGTCAATTAAATTATGTAAGAGGGATTTATTAG CTCAGTCTCACTATGTTTTTGTTCAGGTCATCATTAACTTGTAGAAAACTGAAAGAGCAGTTGGCTAGTAAGTCTATGAT CACTAGTAATTCTTAAATTTCATTGATGATTTATTAGGCTATATATCAGCACTGTCTGATGAGCAAGAACAGCCTGATTT ACTAAATGCTGTTTCTTCAGGTTGGCCAGCTTCACTGCAGTTGATTGGATATTCTACGCATCCATGCTGTTTATTGGCTT GCTATGCTAATGTCTGCTGGACTGTGCCTTCCCAAAATGGTATTTGAACATGGATTCTTGACAAAGCAATGCTTATTATT TTGATAATGTTAAGATGGCCTGAAGATGGGAAAGTCACTTGGGAATACGCTTGAACCAAATGATTCGGTAAATAAAGTCG GGACCGATGCAGTTATGTACTTCTTCCTTAGAGAGGTGGAATTTGTCAATGATGGGGACTATTCAGAGGGACACTTCATC AATATTGTAAATGCACACCTTGCCAACACAATCCGAAATCTTCTTAATTGTACACTAGGGCATTTGAAAAAGAACTGCCC ATCAACTTTGGTGGTGGATTCTACTACAGCTGCAGAAGGAAATGCTTTCTAAGGACAATGTAGAGAGGCTGGTTGATAAA GCTCGTATTCACTATGAAAATCTATCCCTTTAATCAGCTTGTGAGGTTGTAATGGAAATTGGTAATATTGGCAATTCCTA TATGGATGAGCGTGCACCATGGTCTCCCTTTAAGCAAGGGGGTGCTGCCTCTGAAGCAGCTGCCAAGGACATTGTGATTA TATTAGAGACAGTGAGGATTATCGCAGTTGCACTATTTCCTGTTTCCCCGAGCTTGAGTTGGAGAATATATGCACAGCTT GGCTATTCTAGGGACCAATTTGATGCAGCAACCTGGAGTGACACCAGATGGGGTGGTCTTAAGGGTGGCCAGGTCATGGC CCAACCTAAACCAGTGTTTGCTAGGATTGAAAACCAAACTGAAGTGGAAGACAAAAGGGTTGCAGTGGGGAAAACTGTAT AAAGTAAAGGAAAGTTGAAACAAGCTCAAGAAGTCGCTGGAGCTTAGACATTTTTCCCCAGATCAGGATCATTTCATGTC ACATGACATTGTATTATGTATCTTTGTGTCTCTCTTTCTCTTCATAAATATTCAGAGGATTCTATTATTTATTAATAGAT A
CDS sequence (LotjaGi2g1v0021400.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGAAGCTACCTCCATTATCATTCATTTTGATGCACGCTCCCAAGCTCAAGACACACCCAACCTTTATCATAAATGG CTACCCATTCCTTAGGACCATGTCAACATCCACGTCCAGTCTCCATTCTGCAATGAAGGACTGCAATACATCCATCTCAA GGCTTTGCCAGGAAGGGAGAATCGATGATGCACGCAAGCTGTTTGATCGAATGCCTGAACGGGACTTGCATTTGTGGGGT ACAATGATAAATGGGTATATCATGTGTGGCGTGATTAAGGAAGCCAGGAAGCTGTTTGATGGACCGGATGCCATGAAAGA TGTGGTTACTTGGACTGCGTTGGTTAACGGCTACGTCAAGCTCAATCAGATTGAGGAAGCTGAGAGGTTGTTTTATGAGA TGCCAGAGAGAAATGTTCGTTCTTGGAACACAATGATTGATGGGTATGCACGAAATGGCCAAACCGAGAAGGCTTTGGAT TTGTTTAGGAGAATGCCGGAGAGGAATGTAGTTTCTTGGAATACAATCATAAAGGCCCTGTCAGAGTGTGGGAGGATTGA GGATGCACAATGGCATTTTAATCAGATGCGGGAAAGGGATGTGAAATCTTGGACTACCATGGTTGATGGTTTGGCAATAA ATGGGAGAGTTGATGATGCTCGAGAGCTTTTTGATAGGATGCCGGTTAGAAATGTGGTTTCTTGGAATGTGATGATTAAG GGTTATGCTAAAAATAGGAGGTTGGATGAGGCTTTGGAGTTGTTTGAGAGGATGCCTGAGAGAGACATGCCTTCATGGAA TACATTGGTCACAGGGTTCATTCAAAATGGAGACTTAAACAGGGCAGAGAAGTTATTTCATGAAATGCCACAAAAGAATG TGATCACTTGGACTGCGATGATGACAGGCTATGTCCAACATGGTCTAAGTGAAGAAGCATTGAAAATATTTAACAAATTG CAAGCTGATCATGCATTAAAACCCAACACTGGCACTTTTGTGACCGTATTAGGTGCTTGTAGTGACTTAGCTGGTCTAAC CGAGGGCCAACAAATTCATCAATTAATAAGTAAAACAGTTTTTCAGGAGAGCACATATGTGGTGTCGGCGCTGATAAATA TGTACTCAAAATGTGGGGAGCTACATATTGCTAGGAGGATTTTTGATGAAGGGTTATTAAGGCAAAGGGATTTGATATCT TGGAATGGTATGATTGCCGCCTATGCGCACCATGGATATGGCAAAGAGGCAATTAATCTATTTAATAAAATGCAAGAATT GGGTTTCCAAGCTAATGATGTCACCTATGTTGAACTTCTCACAGCTTGCAGTCATGCTGGATTAGTTGAGGAGGGGCTTC AGTACTTTGATAGGCTTCTGAAAAACAGATCTATACAAGTCAGAGAAGATCACTATGCATGTCTGGTTGATCTTTGTGGT CGTGCAGGAAGACTAAAAGAAGCTTTCAATATAATTGAGGGGCTTGGGGTAGACTTATCATTGTCTGTTTGGGGACCACT CCTTGCTGGCTGTAATGTGCATGGAAATGCTGATATTGGCAAGCTTGTAGCTAAGAAAATTTTGAAAATTGAACCCGAAA ATGCAGGCACTTATTCATTACTCTCAAATATGTATGCCTCAGTAGGGAAGTGGAAAGAAGCTGCCAATGTAAGGATGAAA ATGAAGGACAAGGGGTTAAAAAAACAGCCAGGCTGTAGCTGGGTTGAAGTTGGTAATACAGTGCAAGTATTTGTAGTTGG TGATAAGTCCCATTCTCAATCGGAGTTGCTAGGATATTTACTACTTGATCTACATACAAAAATGAAGAAGTCTAGGGACA GTCTAGATGATGATTTATCACTTGATGTCGAACTTTAA
Protein sequence (LotjaGi2g1v0021400.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKKLPPLSFILMHAPKLKTHPTFIINGYPFLRTMSTSTSSLHSAMKDCNTSISRLCQEGRIDDARKLFDRMPERDLHLWG TMINGYIMCGVIKEARKLFDGPDAMKDVVTWTALVNGYVKLNQIEEAERLFYEMPERNVRSWNTMIDGYARNGQTEKALD LFRRMPERNVVSWNTIIKALSECGRIEDAQWHFNQMRERDVKSWTTMVDGLAINGRVDDARELFDRMPVRNVVSWNVMIK GYAKNRRLDEALELFERMPERDMPSWNTLVTGFIQNGDLNRAEKLFHEMPQKNVITWTAMMTGYVQHGLSEEALKIFNKL QADHALKPNTGTFVTVLGACSDLAGLTEGQQIHQLISKTVFQESTYVVSALINMYSKCGELHIARRIFDEGLLRQRDLIS WNGMIAAYAHHGYGKEAINLFNKMQELGFQANDVTYVELLTACSHAGLVEEGLQYFDRLLKNRSIQVREDHYACLVDLCG RAGRLKEAFNIIEGLGVDLSLSVWGPLLAGCNVHGNADIGKLVAKKILKIEPENAGTYSLLSNMYASVGKWKEAANVRMK MKDKGLKKQPGCSWVEVGNTVQVFVVGDKSHSQSELLGYLLLDLHTKMKKSRDSLDDDLSLDVEL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 19 | 19 | - | – | |
| Phobius | 1 | 3 | 3 | - | – | |
| Phobius | 4 | 11 | 8 | - | – | |
| Phobius | 12 | 19 | 8 | - | – | |
| Phobius | 20 | 625 | 606 | - | – | |
| Gene3D | 30 | 104 | 75 | 2.5E-11 | ||
| PANTHER | 38 | 223 | 186 | 2.6E-119 | – | |
| ProSiteProfiles | 44 | 78 | 35 | 9.438 | ||
| TIGRFAM | 48 | 76 | 29 | 4.4E-5 | ||
| Pfam | 52 | 75 | 24 | 0.0011 | ||
| Pfam | 79 | 100 | 22 | 0.022 | ||
| SUPERFAMILY | 102 | 270 | 169 | 2.59E-7 | ||
| Gene3D | 105 | 196 | 92 | 7.8E-28 | ||
| ProSiteProfiles | 107 | 137 | 31 | 11.192 | ||
| TIGRFAM | 109 | 139 | 31 | 1.5E-7 | ||
| Pfam | 109 | 139 | 31 | 2.5E-8 | ||
| ProSiteProfiles | 138 | 172 | 35 | 13.219 | ||
| TIGRFAM | 141 | 171 | 31 | 3.3E-10 | ||
| Pfam | 141 | 170 | 30 | 1.1E-10 | ||
| Pfam | 171 | 200 | 30 | 1.4E-5 | ||
| ProSiteProfiles | 173 | 199 | 27 | 7.026 | ||
| Gene3D | 197 | 261 | 65 | 1.3E-19 | ||
| ProSiteProfiles | 200 | 230 | 31 | 10.216 | ||
| Pfam | 203 | 231 | 29 | 1.3E-6 | ||
| TIGRFAM | 203 | 232 | 30 | 1.4E-6 | ||
| PANTHER | 215 | 258 | 44 | 2.6E-119 | – | |
| ProSiteProfiles | 231 | 265 | 35 | 13.471 | ||
| TIGRFAM | 233 | 263 | 31 | 2.9E-9 | ||
| Pfam | 233 | 262 | 30 | 2.0E-10 | ||
| SUPERFAMILY | 238 | 570 | 333 | 7.59E-9 | ||
| Gene3D | 262 | 345 | 84 | 1.1E-20 | ||
| TIGRFAM | 265 | 292 | 28 | 1.4E-5 | ||
| ProSiteProfiles | 266 | 292 | 27 | 7.322 | ||
| PANTHER | 267 | 354 | 88 | 2.6E-119 | – | |
| Pfam | 292 | 340 | 49 | 2.4E-10 | ||
| ProSiteProfiles | 293 | 328 | 36 | 9.975 | ||
| TIGRFAM | 295 | 323 | 29 | 2.2E-5 | ||
| Gene3D | 346 | 464 | 119 | 5.7E-26 | ||
| PANTHER | 348 | 564 | 217 | 2.6E-119 | – | |
| ProSiteProfiles | 364 | 395 | 32 | 6.752 | ||
| Pfam | 368 | 390 | 23 | 0.16 | ||
| Pfam | 397 | 444 | 48 | 2.3E-10 | ||
| ProSiteProfiles | 397 | 431 | 35 | 11.203 | ||
| TIGRFAM | 399 | 432 | 34 | 1.9E-6 | ||
| ProSiteProfiles | 432 | 462 | 31 | 8.353 | ||
| Gene3D | 465 | 594 | 130 | 2.6E-12 | ||
| ProSiteProfiles | 468 | 498 | 31 | 5.963 | ||
| Pfam | 472 | 493 | 22 | 1.2 | ||
| ProSiteProfiles | 534 | 568 | 35 | 9.745 | ||
| Pfam | 537 | 566 | 30 | 0.016 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0021400.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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