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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0062600 |
| Transcript ID | LotjaGi2g1v0062600.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Auxin efflux carrier component; TAIR: AT2G01420.1 Auxin efflux carrier family protein; Swiss-Prot: sp|Q67UL3|PIN1C_ORYSJ Probable auxin efflux carrier component 1c; TrEMBL-Plants: tr|Q8GV75|Q8GV75_MEDTR Auxin efflux carrier component; Found in the gene: LotjaGi2g1v0062600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:14523325..14526149) extracted from Lotus japonicus Gifu genome v1.2.
TCCGCCACAGAGCTCCACCCTAAGGCTGCTGGAGCCGCCGAGTCTGGCACCGGGAAACACATGCCTCCGGCGAGTGTGAT GACCCGTCTCATTCTTATCATGGTGTGGAGGAAGCTTATCCGCAATCCCAACACATACTCTAGCCTCATTGGTCTCATTT GGTCCCTCATTGCCTTTAGGTACGTTTACCCAATTTCACATCAAAGAGAAAAGGTTTAACCATTAGACTATGATAATTGC AAAATCAGCAATAGCACTTTTCTTTTCCGAAAAAAAAAATACTTTTGATTATTACTGTATTATTATAGGTGTTTGACATG GTTATTATGACTTGTAGGTGGGATGTGCATATGCCCAAAATAATAGAGAAATCAATTTCCATACTGTCTGATGCTGGTCT TGGCATGGCTATGTTCAGTTTAGGTGAGTGGTTGCAAATTAATCTATTCCTCTAAATTCTTATTATATTCTTACAATAAC TTCACAAAAATTGATAATTGTTTTAGTGCCTCCAATTTGGGTATGATTATTATATAATAGACTAAGAATAAGAATGGATA ATGCAATGTTTAGTACCCTGGATATATGCAGTGGTTTTGATTTATAAATATATGTCAGTTGCTATAACACCCTGGATGAG GATTCTACATGTTAAATTTATTTGTCAATATCTCTTTACATAAGTATTAACGGAAATAATTCGTAGACACATAGATTTTC TCAATACCTATCCAACATATAATGTAGCGAGGCTTTTAACTGCTGTAAAATTTATTAGTGGTTAAAAAAATCCGCTAAAT TGTGTGTTAGAAATGTGATGAGAAAATTTATGTGTCCGTGTATAAGAACTCAAGTATTACATGGATGAGATGCTAAAGAG AAAAATTGATAAATTTATAATTGGCATTGTCATATGATGTTGATCCTCCGTATTATGCCATTGCTTTGTCTTAATTATGA AAAGAGGTGTAGTAAATTCAATCGTGCAACATGATTGAATGGATATGTATGAATCTATAAAATCCTTGGATTCGGGACAA AGCAAGTAAACAAACAACTCATGGCCATTCATTCTCGTGATGGTTGTTACCAAGTACCATGACCCAAACGATGTTCACTT GTTGAGCATAATGTCCCCGACACATGGGACCCTGTGATATTAACAACGTTCCCTTGTGCTCCACAAGCTATAGACAAAGG TGGTGGTGACGGCTACCATTTTGGACCCCAATTAGGCATAAAGGTGGTTGATTTAATGGAATCACAAAGTCCAATACATC TTTCATTTTCTATATTGGCTTTTGGGATGTGTACAATGTTTTTTTTCACCAAGCGTGGCACTCAGCCAATAGAAATCATT CAAATGAGTTTTTGACTCCGTTGAGATATCTATTAGCATATTTTTTTATATAGTTATTATAAATGGTAGAGCAACTTTTG CTTCTAAATTAGTTTTTGGGATAGTGTTAGGCTTTCTAAAACCTAGGTCAGAAGGTGAGGATTGTCTTCCCACATATAAG AAGCAGGCTATTTTGAGCATATTTCTAACTAATGTAGAACTTCTCAATAATCTCCCAACAAACCGTTTTTCTATACACAC TCCAATATTCATCTGAACTCACCTTTTTGTCACATTTCCTAAGCTTCTTTGTATTGGAATATCTTCTCGCATGCTTGGAT GAACTTATCTTCCTCATAATTCATTGTGCCATTAAAAAACTATATACTGAAGCTTCTCTCACGAATAAATTTTCACTTAG AATCAATTGTTTGAAACATTTTCAAACATGCACTATTGTCCTTTTGTCAATTTTTATTTTTATTTTCTATGCTTTTATTT GAAGATTGAGTTTGATTTGGTGGTTGGGTTTGATGTTTGTATTGTAGGTCTTTTTATGGCTCTTCAACCCAAGATAATTG CATGTGGGAACTCTGTAGCCACATTTGCCATGGCTATTAGATTCCTTACAGGTCCAGCAGTAATGGCAGCAGCTTCCATC GCTGTTGGCCTACGTGGTACCCTTCTACATGTAGCTATTGTTCAGGTTATCAATTTTAACTTCCTATTTTGTCTTAACAT GAAGATAATGAATGAATACTAATCAATTCAAACGGTCAATGTTTACAAAACATTCCTTGGTTTTCCAGTTATTTCTTTAC AAACTGTCAATGTTTTAAATTAAAATGTGATAATGATGTGGATACATCGCAATAATTGAAATTTATGAAAATTTGATAAA TGCACTCTTATTTGGTATTACATTTTTTGTCCCACCAATTAAATTGTGCCTCATTATAATTAAAAAGATGGGTAGGATAA AGAAAGTGACACCAAATAAGGACGGGAGATTTCCATCCCTAATATGAGCACAATTGTCGTCACGAATACTTCAACAAGTC GCGAGTCCAATTGCATTCATGCACCTTGATTTCAAGTCGTGCTCACCATTATTAAATATGATTTTTTTATTAATTAATCA CAAACATTTTATGATTGTTTGAATTACAATTAATTAAAGGATCAATCTAGGTCTACTTTTGACGATTTTGCCTTACAGAA ATGTTGTGGTTGAAAACAGGCTGCACTTCCACAAGGGATTGTTCCATTTGTGTTTGCCAAGGAGTACAATGTCCATCCAG CAATTCTTAGTACAGCGTGAGCAATCAAACCGGCCTCCTTATTTTCGTCATCATATTCTCCATTTATCTCAAGTAAAGAA TTAGAAATTGACCGTTTTCCAATAAATTGAAATTGCAGGGTTATATTTGGGATGCTAATTGCACTTCCAATTACTCTAGT CTACTACATACTCCTTGGGTTGTAA
CDS sequence (LotjaGi2g1v0062600.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCTCCGGCGAGTGTGATGACCCGTCTCATTCTTATCATGGTGTGGAGGAAGCTTATCCGCAATCCCAACACATACTC TAGCCTCATTGGTCTCATTTGGTCCCTCATTGCCTTTAGGTGGGATGTGCATATGCCCAAAATAATAGAGAAATCAATTT CCATACTGTCTGATGCTGGTCTTGGCATGGCTATGTTCAGTTTAGGTCTTTTTATGGCTCTTCAACCCAAGATAATTGCA TGTGGGAACTCTGTAGCCACATTTGCCATGGCTATTAGATTCCTTACAGGTCCAGCAGTAATGGCAGCAGCTTCCATCGC TGTTGGCCTACGTGGTACCCTTCTACATGTAGCTATTGTTCAGGCTGCACTTCCACAAGGGATTGTTCCATTTGTGTTTG CCAAGGAGTACAATGTCCATCCAGCAATTCTTAGTACAGCGGTTATATTTGGGATGCTAATTGCACTTCCAATTACTCTA GTCTACTACATACTCCTTGGGTTGTAA
Protein sequence (LotjaGi2g1v0062600.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPPASVMTRLILIMVWRKLIRNPNTYSSLIGLIWSLIAFRWDVHMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIA CGNSVATFAMAIRFLTGPAVMAAASIAVGLRGTLLHVAIVQAALPQGIVPFVFAKEYNVHPAILSTAVIFGMLIALPITL VYYILLGL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 23 | 23 | - | – | |
| PANTHER | 1 | 168 | 168 | 7.3E-110 | – | |
| PANTHER | 1 | 168 | 168 | 7.3E-110 | – | |
| TIGRFAM | 5 | 168 | 164 | 9.1E-86 | ||
| Pfam | 7 | 163 | 157 | 2.8E-78 | ||
| Phobius | 24 | 41 | 18 | - | – | |
| Phobius | 42 | 52 | 11 | - | – | |
| TMHMM | 53 | 75 | 23 | - | – | |
| Phobius | 53 | 74 | 22 | - | – | |
| Phobius | 75 | 85 | 11 | - | – | |
| TMHMM | 85 | 107 | 23 | - | – | |
| Phobius | 86 | 108 | 23 | - | – | |
| Phobius | 109 | 113 | 5 | - | – | |
| TMHMM | 112 | 134 | 23 | - | – | |
| Phobius | 114 | 134 | 21 | - | – | |
| Phobius | 135 | 140 | 6 | - | – | |
| Phobius | 141 | 165 | 25 | - | – | |
| TMHMM | 144 | 166 | 23 | - | – | |
| Phobius | 166 | 168 | 3 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi2g1v0062600.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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