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LotjaGi2g1v0071700.1

Overview

Field Value
Gene ID LotjaGi2g1v0071700
Transcript ID LotjaGi2g1v0071700.1
Lotus japonicus genome version Gifu v1.2
Description tRNA:m(4)X modification enzyme TRM13-like protein; TAIR: AT4G01880.1 methyltransferase; Swiss-Prot: sp|Q9NUP7|TRM13_HUMAN tRNA:m(4)X modification enzyme TRM13 homolog; TrEMBL-Plants: tr|A0A151QXE9|A0A151QXE9_CAJCA tRNA guanosine-2'-O-methyltransferase TRM13 isogeny; Found in the gene: LotjaGi2g1v0071700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:17613131..17618677) extracted from Lotus japonicus Gifu genome v1.2.

AAATTTTGTGTTTTCCTGCAAAACAGAGTGGCGCAGATTTTGTATGTAGCAGCAAATTTGCCCTACTGCTCTATTCCCGC CGGAGATACGGTCGAAGGAGAAGTCCAGAAGCGTGCGGAGCGCCCCCATTGCCGGTGTCTGTTCTGTTCCGTTGGTGTTT CCGGTACTTGTCTCTTGATCCTTCTACTTTGCTAGGGTCGTAGCTTCCATACAATATTATGTTAATTTTGATTGAATGGG TTGCACTGGATATACGAAATGCGCGATTCATTAGTTCACTGTCTACGGTTCTAATGAATTAATGAAGGCCATGTTCTGTT TGGTGAAATGCTTGAATTGAACAAAATGATGCTGAATTAGATTGTGTCCTGTTCAGTCTAAGAAGTTCAAAGTTTAATCG AGTGTGAAAGAGTGGTGCTCGTGATAACTCTTCAATAAGGGATATCTTCTGGCTTCAAGGGGCCGATGGATTGGTGGTGG TGGTGAAGTATATGATATCTGCAAAGCACTCCGAGATGCTCAATTTAATAGTTGAACCAACCGGGGTTTAGTAGGGTAAA ATTGTGAATACCGGAGGCCTGTCATAATCTCCTTTTTATAAGCCTTTAAGGTTGGACGGCACAGATTAGTAAATTTGAAC TGTATCCGAGATAAGGGGCGTAGGACCGGGATGGATGTAGTATCCTAGTTAACTGGTTTTAGAAGGAAGTTATTAGGGAG GCTGAGATATTTGGGATGGGGACAATCTTTACTAGGGAGCTAACTGCATTTCAGCCCAATGGGGAGTGGCTCGGGTCAAC TGTGGAGTGTGCAGATATTGGGCTGGAGGCCTAGTCCGGGACATGCCCCGGTGTGAAATTTTCCTGATTTATTTGGCTGA CAATGGCATGTGTTACTATATGTTTTAACTGCTGAATAAATGGTTAAGGCTAGTACCAAGGTTTGGGGTTTCTTTTCGAA CCCTTTTGTTGAGGTTATAGTGAGAGGATTTGCCGGTTATGAAGAACTCTTAGAATTAAGACTAAAAAGGTGAACATTGA TATTTTCTAGGAGAACTCGCATAGAACAAAAACGATTGAACATTTACAAATTTATAAATTTTTGTTGGTTTTTGTTGCTC TGGTTACTTGTTTTGGGTATCAGCAATGTTGAAATCAATTCCAAAATGCGATGGAAAATGAGCTCAAGGAGTTGCTACAT GTTGTGACCTGAAGAGCCAATTAATCAATTATGTTCAAATTTATTAGGTTCTTACATGCATTACTACTAGATTACTTTCA GTAGGTTATCATTCATATTTTCGTTTCATCCTTATAAAATCAATTATGTATGTTAGAATTGGATTTTTGAGACCTGGTTG GAGAAATAGTTTGAACCTGCATTCTGTTTACTAGCTGTTTTGGAATCTTATGTACAATTGAAGGTGGCTTTGGATATATT TATTGAATACTTATGTTTTTTTATTAATTATTTGTATTCAGGTTTGCCGATTTGACCGCTTCACTGGTGGGGTCAGACAC CAGTGGTTGACCTTTGGTTATAGAATTATGAGCAAAGCTACCTGAAAGCATAGTTTAAGGCTGTATTCTTTTTAAACTGT AAACAAGCTACCTTGGAGGTACTATGGAGACTAAGAAGTGCAAGTTTTGGCTTCCCAACAAAAACAGATTTTGTGCTAAC TCCTCTCTCACTGGTTCCTTGTAAGTTTTGCTGTCTCTTTCTTTCTATCTGTTGTTTGATTCATTCACTCACTTTCTCTC AATTATATGGACCCAGATTCTGTGGCAATCACAACTCAAGGTCCCCTGGCCAGTGGATTCCGTGCCCCATAGATCCATCC CAGTACATATTCTCCCCCTTGTGCATTCATCTGTATCATTATCAATCCATGTTCATTCTTTGATTTTAAACTCTTTTTAA TCTGGTTCTTGTCCTTTCATCATTTGATAGCTCAGTTCTGGAGCAAAATCTCAAAGGACATGTTAAGCGGTGCCCTTTGC TGAAACAGGCACAGTCCTTGTCCGTCCAACCTTTCTATCAAAAAGGTATCAATGCTGGTTCTGATGGAGAACAAGAGGAG GAAGAATCAGGGGTTGATGATTCAAGATTGCCCACTGCGACTATTTCTTCAGAAATGAAGAGGAAGGCTCTTCATAGCAT GAGTGTGCCTGAGTTTTGCACTCTGATTGAGAAGATCGAATCTTTTCACGACTCGTTGTGTAAGGATGTTCAGGAATCGG TTCAGATGCCTGAGGTTTGCAGGCTCTGGATAAAAAGAGGAGTAGAAGATAGGTAGCTATTGGTGAAACCTTTGAATTAT TTGTGGGTTAAATTTAAGTTGCCCATGTAGTTTGTATCAAAATCATTTTGCCAGTGACTCTGATATGTTACTTTACCCCA GTGGTTAAACTAAATGCTTGGGGAAATGTGACAAAGTCAATTTCACAAGGAAGGACTTTGATTTCAACCCAAACTACAAG GGGTAAACTGAATTTAACCCTTTGTTTAATGGATTTAGTTTCTATTTCTAACTTGAGTTGTTTACAGGAAATTGCCATTT CAGGAGAAACATATTACTCAGCAGGCCTCTATTCTGGGGAATTTGGAACGTTTTGGTGTATTGAAGAATTCTCTTGGAAG GAAAACATCCAAGTGTGAGGAACCAGTTGAGGGGAAGGAGGATGGTGTCCCTGCAGTGATTGAGTTTGGAGCTGGTAGAG GGTATTTAACACAAATGCTTGCAGATTGTTATGGAATCAATAGAGTCTTTCTGGTCGAGCGGAAGGCATACAAGTTGAAG GTATGAGGACTTGCTCAGCACCGGAGCTTCTTTTACTGAGTTCTAAATCATGACAATCATATTTGGTGATGTTCCATAGC TGTTTGAACTTGAGTAATCTTTGATTTATTTATTTGTTACTTACATCATGCGAATGCTATTTCTAGGCTGATCGATCCTT GCGGCAGAATGAGAGCATGATGTTAGAGCGCTTGAGAATTGACAGTAAGACTCTCCAGTGTTATTGTTGTAGAAGATATC TTATGAACATGTAATTATATTAGTTGAGTTGGGCTGCCTGCTGATATATCTTTACCGAGGAAACCCTATTTCGATCCTGA GTGCACAGCTTGTAACTGTGATTAAAATACTTATTATAATTTAGTATGTATTCTGAACCTTTGTGCATATGTATCAATCT CTATGCAATGACCTTCAGCATCTTGCAAAGCTTTTAAAGGTTAGAATAAATGGGATCAAGTGCATTGCATATTTTGATGG CTATATATGCATGGCTTGGCTGGTGTTTTCAGTATAGTTTCTTCTTTTGCTCCATTAGTTTTTTTGTTGGCCATTCTTTT TGTGTAAAAAGAATTGTTGATCATTCTTATTATAAAGTGTACTTGATAATTGATAGTATCAGTGTATGCCCTTATTTTGT AGATGGTGCTGTTTGTGGTAATCTTTCTTTTTAGCTGTTATTATGAGCATAATATTGAAGCTGGAGAGGATGGATTATAG TATTAGGGAACTGTGTAGAGTAATCTGCGCGTATACTTTAATTGCATGATAAGTGAGAATGATAGAAACTTGGAATTAGA GTAGAAAATAGGGAGACCAAGATCTTTACTAGCAGTGGTAGATCTCTGTTAAGACTGAAAATGTAAGGATAAAAAGACAA CATGGGAAATTTGCAGATGACCTCACACAAAACCTCTCCATCTTTCTCAATTCATGCAGTGGTATCTCTCATTCTGCTGC TAATGCAGAAAACACAGCTCTCATTCCTAATCCTTCCCCCTTCATATTTTGATATCTACCGGGCTGTTAACAGCCTCAAT CCTTTGTTCCTATATATCTGGTTGGCTCTGTTCACTCAGACCATTTGGATGTGATATTAGACCACAGTAAAATAATGCTA ATTTAGCACCTTTTGTCATTTTCTGGTATGACTTTATAAAGCCAACATTTCTGGCAAAACATTTTTGCTAGCCTTCCCTG CTAATGTCCTAGGCTGAAGCCTTCACCTTACGCTTGTTATCCTACCCAGAAACAACTTTTATTAATGTAATTTTCACGCG GTATACTGGTTTTCCATATATTTTATATTCTATGTGCATGACATGTGCACTTTGTCTAATTATTTTGATTTTGTTGTGTT ATGCCATCCAACTGTATTCATGTTTCTTGTAGTTTTAGTTCTTCTGCTTCTTCGTCATTCTGGATTGCTGCTCGATTTAT TTTACCTTGTATTTATGATATACTTTTGGGCCCAATAAAATTGTTAAATCCAACTTTGCAGTTGAAGATTTAAATTTAAA TGCGGTTGAGTCTATGCAAGGAGTTCCGTTCGTGGCCATTGGTAAACATCTATGTGGAGCTGCAACTGGTAATTTTATCA ATTTTTATAAGCATTCCAATGAAATTCATAGTGATTATATCTCATCGATGAAAACATAAATGATCATGCAATTTTTTCTC CGCAGACTTGACTTTGAGATGCTGCTTTCCTGAATACAGAAAAGATAGTAGTGAACAGGACACTGCTAGTGCTAATGGTA ATTTTGAAGGTTTAGCTATAGCAACATGCTGTCACCATCTTTGCCAGTGGAAACATTATACAAGTAATGACTTTCTTCTT TCGTTTACTTGTGGACACTTTAATTTGTATATTTAAATCACTGTTGGATGTAAATCTTGATTATAGCTTTTGGTTACTAG CTAACTTTAATTGTAAACCTGCAGATAAAAGGTTCTTTTTAGATTTGGGGATGACGAAGGAAGAATTTCATGCCGTTACA TGGTTTACCAGCTGGGCTGTTGATGATAATCATGGTTCAGATCTTTCTAATACAACTAATTGTACATCACATTTGCAATC AATGTAATGCATCCAATTCTCTTATCATTATTAAATTGCGCATAAAAACTGTTGTTACCAGCAAACTAGTATTTTAAGTG TTAAAGAAACTGGAATATTAAAAATGTGTTTTGGCAGCAGAAAGGAGCAAGGTGATGGAGATTCAAATGGAGTTGAAAAA ATTCTCTCAGACATGGAAGCAGCTGAACGAGCAGCACTGGGATTTAAGTGCAAGTGGATTATTGACATGGGGAGGTTGAT TTGGTTAAGAGAACGTGGATTTGATGCACAGCTTGTCAGATATGTTCCCCCAAGCATTTCTCCTGAAAATCATTTGCTAA TAGCTAGACCTTCACATTGAAGAAAATACTTATTTCCTTCTCATCTTTTTTTATTTTTTCTTTTATACCTTGTGACAATA TGTTTAATTTCTTGTTAGGTTTTTATGTTAAATTTCTTGTTAGGTTGGTATGTTTAATGTTCTTTTTGATATATTTTATA AAATGAAATACCACATGACATTACCATCGTATTACCCTGGGGATTAGGATTGAATCATTTCTCATATTATTTATTCTCTT CTATTTGGTTGGAGTTGTCAGAGCCACAAGTATGTATGATCGATCACCTGAGTAGTCCCATGCCTGGTGAATCGTAGTGA CCTTCATTCCAAGAAATGACCTGAATT
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0071700.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAGACTAAGAAGTGCAAGTTTTGGCTTCCCAACAAAAACAGATTTTGTGCTAACTCCTCTCTCACTGGTTCCTTATT CTGTGGCAATCACAACTCAAGGTCCCCTGGCCAGTGGATTCCGTGCCCCATAGATCCATCCCACTCAGTTCTGGAGCAAA ATCTCAAAGGACATGTTAAGCGGTGCCCTTTGCTGAAACAGGCACAGTCCTTGTCCGTCCAACCTTTCTATCAAAAAGGT ATCAATGCTGGTTCTGATGGAGAACAAGAGGAGGAAGAATCAGGGGTTGATGATTCAAGATTGCCCACTGCGACTATTTC TTCAGAAATGAAGAGGAAGGCTCTTCATAGCATGAGTGTGCCTGAGTTTTGCACTCTGATTGAGAAGATCGAATCTTTTC ACGACTCGTTGTGTAAGGATGTTCAGGAATCGGTTCAGATGCCTGAGGTTTGCAGGCTCTGGATAAAAAGAGGAGTAGAA GATAGGAAATTGCCATTTCAGGAGAAACATATTACTCAGCAGGCCTCTATTCTGGGGAATTTGGAACGTTTTGGTGTATT GAAGAATTCTCTTGGAAGGAAAACATCCAAGTGTGAGGAACCAGTTGAGGGGAAGGAGGATGGTGTCCCTGCAGTGATTG AGTTTGGAGCTGGTAGAGGGTATTTAACACAAATGCTTGCAGATTGTTATGGAATCAATAGAGTCTTTCTGGTCGAGCGG AAGGCATACAAGTTGAAGGCTGATCGATCCTTGCGGCAGAATGAGAGCATGATGTTAGAGCGCTTGAGAATTGACATTGA AGATTTAAATTTAAATGCGGTTGAGTCTATGCAAGGAGTTCCGTTCGTGGCCATTGGTAAACATCTATGTGGAGCTGCAA CTGACTTGACTTTGAGATGCTGCTTTCCTGAATACAGAAAAGATAGTAGTGAACAGGACACTGCTAGTGCTAATGGTAAT TTTGAAGGTTTAGCTATAGCAACATGCTGTCACCATCTTTGCCAGTGGAAACATTATACAAATAAAAGGTTCTTTTTAGA TTTGGGGATGACGAAGGAAGAATTTCATGCCGTTACATGGTTTACCAGCTGGGCTGTTGATGATAATCATGGTTCAGATC TTTCTAATACAACTAATTGTACATCACATTTGCAATCAATAAAGGAGCAAGGTGATGGAGATTCAAATGGAGTTGAAAAA ATTCTCTCAGACATGGAAGCAGCTGAACGAGCAGCACTGGGATTTAAGTGCAAGTGGATTATTGACATGGGGAGGTTGAT TTGGTTAAGAGAACGTGGATTTGATGCACAGCTTGTCAGATATGTTCCCCCAAGCATTTCTCCTGAAAATCATTTGCTAA TAGCTAGACCTTCACATTGA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0071700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

METKKCKFWLPNKNRFCANSSLTGSLFCGNHNSRSPGQWIPCPIDPSHSVLEQNLKGHVKRCPLLKQAQSLSVQPFYQKG INAGSDGEQEEEESGVDDSRLPTATISSEMKRKALHSMSVPEFCTLIEKIESFHDSLCKDVQESVQMPEVCRLWIKRGVE DRKLPFQEKHITQQASILGNLERFGVLKNSLGRKTSKCEEPVEGKEDGVPAVIEFGAGRGYLTQMLADCYGINRVFLVER KAYKLKADRSLRQNESMMLERLRIDIEDLNLNAVESMQGVPFVAIGKHLCGAATDLTLRCCFPEYRKDSSEQDTASANGN FEGLAIATCCHHLCQWKHYTNKRFFLDLGMTKEEFHAVTWFTSWAVDDNHGSDLSNTTNCTSHLQSIKEQGDGDSNGVEK ILSDMEAAERAALGFKCKWIIDMGRLIWLRERGFDAQLVRYVPPSISPENHLLIARPSH
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR12998:SF0
2 458 457 4.9E-168 –
PANTHER
PTHR12998
2 458 457 4.9E-168
IPR039044
Pfam
PF11722
5 31 27 3.7E-10
IPR021721
ProSiteProfiles
PS51800
39 66 28 13.397
IPR022776
Pfam
PF05253
39 63 25 4.0E-8
IPR022776
MobiDBLite
mobidb-lite
81 101 21 - –
Pfam
PF05206
173 455 283 1.3E-85
IPR007871
SUPERFAMILY
SSF53335
211 273 63 1.23E-5
IPR029063
Coils
Coil
252 272 21 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0008033
Biological process TRNA processing The process in which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group.
Subterm of
GO:0008168
Molecular function Methyltransferase activity Catalysis of the transfer of a methyl group to an acceptor molecule.
Subterm of
GO:0030488
Biological process TRNA methylation The posttranscriptional addition of methyl groups to specific residues in a tRNA molecule.
Subterm of
GO:0106050
Molecular function TRNA 2'-O-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + tRNA = S-adenosyl-L-homocysteine + tRNA containing a 2'-O-nucleotide.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0071700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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