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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0072000 |
| Transcript ID | LotjaGi2g1v0072000.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | E3 ubiquitin-protein ligase family; TAIR: AT1G68070.1 Zinc finger, C3HC4 type (RING finger) family protein; Swiss-Prot: sp|Q8GUU2|RIE1_ARATH E3 ubiquitin protein ligase RIE1; TrEMBL-Plants: tr|I1KKV7|I1KKV7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0072000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:17742795..17751162) extracted from Lotus japonicus Gifu genome v1.2.
CCCCGAACTGGGCCTAAAGTTCAGAAAATAAATCATGAGCAGAGCAATGATGAAGCCTCCTCACTAGAATAGGGTTTTAG TACTAATGGGCATAACTGTCCTTCAATCCCTAGAGCTAGAACGGTAATTAGAAAGAGGTTAAAGACAAGAGATAAGTTGC AATAACACACTCCAACCGTCTGAGCTCTTCTTACCTTCAACAACCAATTTTCTCTCCTCATCCACCTTTCAACGCATCAC CCAAACAATCCCTTACCCTCTTTTCAATTTCCCCTCTCTTTTCTCCATCATCACTTCACTTATATTAATACAGTTCCACT CGCACACAGTTGATTGAAATTTGAAATTGAATCACTCTAATTTCCAGTTTTCAACTCCAAACGTGTTTTCTGAAGCCTTC TCCTTTTCTCAATTTCAATTATGCAAACGCGCTCTTGGTGTCTCTAGCTTTAAGAATGTCGTCACGAACCACCGCCACGA CGGAGACGCCTGAGGAGGAGCCTCAGGCACCGCTACTCCGCTCGCGCCACGACGGCGGAGGCCAGCCACCCACACTCGCG CTCCTTCTCGGTCGCGCCGTTGGCCGACGAGGCCCGTCGGTGCTGGTGCGGGAGACAGCGGCGCGCGAGCTCGAGGAGCG GCGCGCCGACTGGGGATACTCGAAGCCGGTGGTGGCGCTTGACATGTCTTGGAACATGGCGTTTGTGGTGGTATCAGCGG CGATGCTTGCCTGCACCGTCGGCGAGCAACCGAACACGCCGATCCGGCTGTGGATTGTCGGCTACGCGCTGCAGTGCCTC TTGCATGTCGTGCTGGTGTGGTTCGAGTACCGGCGTCGGAGCCGGAGGGACTCGAGGCGGCGGCGGAGGCTGGTGGAGAG CGACGCCGGAAGTACTGACGGCAGCGACAGCGATGACGGCGATGCGAACTCGTCTCGCTCCGGGTACGTTTGACTTAATT CCTATGTGGATTTTTTATTTTTATATATTTAAATTAATCTTTTCATTTTTCTTTTTATTAAGTTAGCATTTGTAGGTATT TAATTAAAAAAAAAAACATTTATACTTTGTAGCTTTGAAACTTTGCTAACAACTCAAGATTTGAGAGTCTTGGTTCATTG ACATGTTAATGGAACAAAACTTAACACTAAAGGTTCAAATCAGGGGAGGGGGAGAGGGGGGAAAGGAAAATAAATGTAAT TTACTGTTATATCATTTGAGTAGGTGGAAGAAAGAAAACAAATAAATCCTCAATAATCATCCTTCTCACACCTATTAAAA TTAATCTCATCAGATTAATCCCTAACATAAAGAAGTCACATTTTTAGGCCTAGAGTATGACAATATCCGGCACATCACAT ATGCTCTTGGATACCCCACACTATCATATGTTAGGTCTAAGTAAGTTAAGCTAGGGACTGATTTGATGTGCTTGAAAACG TTAGGGATGACGTTGAGAGTTTACTTAAAAAAGCTTTAGAGTAAATGCTTGTTTAAAAGTTACGGATGACATTGAGAAAC TTTAGTTAGGGACGATGTGACGCCCTGAGCTGAGAAGGGCGAGGATTGATCGCCTTCTATGTGGAGGGACGCACCACACC CGAACAAGAGGTATTCCGTGGCTGTGTAGGGATGGACTATACAGTTGAGGAGGGCATAAGAGATTTGATTGGTACTACTC ATAACAACAAGTTGCAACTTCTTTTCGGGAGCCCAACTGATAAGAACTCCATGGTTAAGTGTGCTTGCCTTGGAGCAATA TCGTGATGGGTGACCTCCTGGGAAGTTTTCCCGGGAAGTGCGCGAGTGAGGACAAAGCGCACTGAAAAGACTCGTGTTGT TACCGTGAGGCCAGTCGTCAGATCGGGACTGGGAAGTTTTCCCGGGAAGTGAGGCCAGTCGTCAGATCGGGACTGGGAAG TTTTCCCGGGAAGTGCGCGAGTGAGGACAAAGCGCACTGAAAAGACTCGTGTTGTTACCGTGAGGCCAGTCGTTAGATCG GGATGTTACAGACGACATTGAGAAACTTTAGTTAAAACGTCAATATGACTGACTTAGTCCGATATAAAACAGCTTTAGAG TAAATGCTTGCTTAACGTGAAGCCATGTTTGTAGTAATATAGGTTTGTCTTTGTTAATACTAATATATATAAGAACATTT TTGCAATTAAAGAAAAATAATGACGGATGTTTTAGTTAACATAGTCAATAAATTACTAAGTCTTTTTCACTCGCACCCTT CCATTCCACATGTTTGTAGGGGAGGCAAAACTTGGAGGGGGAGGTTAAGTCTTCATTCCCCCTCCTCCATATCCCTTCAA CTGAATAATATCTAAAATATTAGCTTTTTTGCTATATTTGGAGCATATTGAAAGTAGAATAGGAAGAATTTCACTAAAAG ATTGAACCAAAGAAAACAAAAGCGAGCGATGTTTTACATTGTTCAATTCCATCTGTGTCAAATGTTTCTTTTAGTGAGTG GTCTAATTTCAATTGTTATTGTCACTTTTAAATACTCCTTTTTATTTAAGCTCTAGTTCTACACGGGTTTGTGGGATTGC CAATAATACAGGAGAGTCGTGTCTGAGACCCTGGACCCGAGTTTTTTGCTGTGGACTACTTGAAGATATTGATGTAATAT TTATATGAACTAAGTTGTTGTAAGATAAATTGATTGAGGGAGACTGAGAATCCAAGATAACTAATGGTGCGTTGCAGTTT TTCATAATGTGTTGTGTTAATATATTATTTTAGTTTTTGCAATTATTACTAGTCCTGATAAATTATTTGTTGGTAAATAT CTGGTAATAATTTTAATTTTTTACATTGAAAGTTTTATGTTTGTTTTAAGATCAGTAAATGGGATCCTTCGGCTGATAAT TTTGTCACAGAAGTTGTATTTCACATAATGTAATGTGAGGACTAACCACAGTCCCCAGGACAGGAGTCAGGACTACCATA CACCTTAGGAGAAGGAAATAAAATTTCTGTTCCTATTCTAAGTCCCTGGCTGCTGAAGCATGTTAATTTACTTTAGTATT ATCTGCGGTTTGTGGCTTATTATCATATACATATTTGAATGGCATGCAATTAAAATTCGTAGACACTGATTTTGGTCATC TGCTAAACAGATTCACAAAACGATGTGAAACAATAAATACTGGGGTTTCATTCATTTGGTGGATGGTGGGCTTTTACTGG GTTGTCTCTGGTGGTGATATGCTTATGCAGGATGCCCCACGGTTGTACTGGTAAGCCCGTTATAGTCTGATATGTACACT TGTAAACTCGCAGCATGCACATGATATTTGCTATTTGTTCAGGTGCCTGAACAATTTTCTCCTTCATAAGTCTTTTTTTC TTTGTGGGCGGGGGGAGGGGTGGGGATGTGTCTATTTACAAAATACATCACAAGCTCCTTTTCAATTATTTCTTTTGGAT AATAGAAAAATGGAGAATTCGGTGATTCTTTTTTGCTAATATTCAGACATGTGTTATATTTAATAGATTTATAATTATAA AAAAATTCTTATGTACAATATTTCAAGTTAGTGAAACACTTGACTAAATATTAATCTTTACTTCAAAGAGGTTTTTCTTT TCAAATTTTTATTTAAGGCCAACTTTGAAATATGGTCCTTGAAGTGACACCCAGTTGATCCTTCAAAGAAGGAAATTGGT TTCATTAATTTTTATTGATTAGAAGAAATGGAGAAAAAAAGGTGATGTTGAGTATATCTGGGTTGGATCACAATATTTTA TGGATTGTATGGTGAATTTTGTTGATGTTAATGTATGAAAATATCTGTTTTTGACTTCTGCAGGTTGGCTGTTGTTTTTC TGGCTTTTGATGTATTCTTTGCCATCTTCTGTGTTGTTTTGGCATGCTTGATTGGCATTGCTCTCTGTTGTTGCTTGCCC TGCATCATTGCTATTCTCTATGCTGTTGCTGGACAGGTATGGATAAAATAAAAATTAAATGTCAGGCAACATGTGTGCCT TCTAATTGTTTTCGTTATCTCATTTTGAGAGAAATATAGGAAGGTGCTTCAGAAGCAGATCTTAGTATACTTCCGAAATA CAGATTTCAAATACTAAACAATGAGGAAAAGCCTAGTGGTGGAGCCGGATCAATGGTTCCCACAGAAACCAGCAGTGCTT ACTTGGCAAATGAAAGAACACTTTTACCTGAGGATGCGGTATGCTTTCCTTAAACAAATAATTTATTTCAGTCTAGTGTT TACTACTTCTGAAGAATAGAAATGAATGGTTCCCTAATTTTCTATTTTGGTCACAGCACATAGAAGTTCATACTTTAGCT CAATGTGTTTGTATGTATGTGAATCTAGTTATCCAAAGGGGAAGGTAACTAATCAAATTTCTACATCTGAGTGCTGATAT TGCCTTTGCAGACTTCATATAGTAGGTTCCGGAAGGCTTATTTTGGTTTGCATTTGTGAACTAATTTATAAAATATGTGG TTTAGAAATTTGAGAAAAAACTAAGACGTTTAAATTTGAGTCAAAGAAACAACTGCTGGAGTTATGTCCTTTTTTTAGTA AGTTTAATTTAGAAGCTACAAAGAGGTTACAACTTTTTATTTTTAAAGAGCTAGAGGTACAACCTTGGGCAATATTATTA TTATTATTGTTGTTGTTGTTGTTTTAATAAGTTTGATGTAGAACTATGAATCACGAACGCATGTCTCTAAAGAACATTGA CACTCGTACTTTACGTGTCAGACACCTTTTTGTGGTGTCTGAGTAAATTTTTTTTCTACGGCTTGCACACTTTGAGCCAA CATCTCTTGTTGGCTGGACACTTGAAAGACATTGATGATATAGTGGGAATGAGTTTAGATCACTTGATGAGAGTGAAATT CTTCAAGTTGCTAATTTATTATTTGATGAACCAGAGCTAGAGTCTACTCTAGGGTTTAGGCTTATCAAAAAAAAAAAGCT AGAGTCTAATTTTTTTTTCTTTTTCGATGATGATGATTAAGAGGGAGGAGAAAACCGATAGATAGATATTAGCTCTTTCT TTATGGGACACAATGTTTACTACTTTACTCTGTAAAATTAAAATGAGCGCATAAGAAGTTGTTTTATTCTTTCTTTTCTA TAAATAGACTAACTTGTCTTGATTTTGAGAAGGTGGATAATGTGAGAGGAGTGTGTTATAGTGAGAGGTGAGAGCATTAA ATAATAGCCATTGGATTAGCAGATATGGTTCAGATTTAAACCCCACTTTAAAATTGCACTACTCTATTTCACCCACGCCT TCTATCTTCTTCTCCTCTCTCTCACTCTCACTCTTACAGTCTTACTATTAAAAGATCTTCTCCCACCCACTTAATATTTT TTTAATAGATTTCAGTTTTCATAGACTGTAATCGTTAGGATCTGAAAAAATCCTAACAGCCAAATGATAGAAAAATAAGG ATAAAGGATAATTTTTGGTATTTTTATTATAAAAAATGGGAAATAGGGCTGGTTCTTCTAATAGGGCTGGTTCCCTTCAC AACTCAATAATTCAATTCCATAATCTAACCTAATGAAGGAGCTCTTATTTATAATAGACTAATCCTAGACTTGAACCTAA GAAATAAAGATAGATTGCCAAAATAAAAGATAATCCCTAAAATAAAAGATACTCCAAATCTAAAGACAACCCAACCCCAA AATAAAAGATCTTTTAAGATAGACTCTAAAACTTAAAAAATAAATAATAAAAAAATCTAAATCCCTAATAATTAGGTCCT AACAATACTCCCCTCCAAAAATCAACCTTGTCGTCATGGTTGGAAGCTAGCAGACTAGACAAAAGCTTCTCCTCCTAGAT CCCATTGTAAGCGGCAATCATGGTAAAACGCCAAATCAGCAAGTGCCCATATGTCAATGTGCGGCGGCATTGGAGGAGGT CGCTTGGTAAAGACCCATAGCGCCATCAACGATGAGAACCCAGTCACATCAATCGAAGGAACACCCAAGTTCATGGTCGT GCGAGTCTACATGGATGAACACATTGACACTGGAACGTGCGTCAATGATTGTGTTGAACCTCTTCAACCCAAGAAACTTT CTGATGTTCAATCAATGTCACCCAATTCCATGTTTTGAACACAGAAAGTCATAGTTGTTAGAATGCCTTCAACTTTTGTC TTGTTCTCTGCCCTTCGATGACAATCAAGCTTCAACTCCTCCTCGGGTTCATCTCCTTCCAACATAATACTAGCCACCAT TCCCGCTCTGGTATGAGAAGGCGGGGGAAAAGAAACCTCTAGAGCGAGAGGTTGTTCTTCAGCAAGATGAAATTCCTCAT CGACATCCCGAGCAATCACCATGGCACGAAGGAACGCAATCTATACGAACCAGTAGTCTGAGACCCGCCATAAAATACCC CAACAAAAGTTCTTAAGAAAGATTAGGTACTTGGGCCACCAAAGCTTCAAATTTTCTCCCTTAAGCATCAACTGTACCTC TCTATCTGAGAGTTTTCAACCTGTGGCAAATGTTACCGTTGCTGCCGTGACCAAAACATCAAAGCAAGAGTGGGATCAAT GAATTCCAAGTAAGATCGGGAGTTTGACAACAGCAGAATCGAAATCAATGAGCAGCTTCCCCTTCCATGCAGAGGAATGC AAATTGCATCTTGTGTCCCTCCGAACGATGCAAGACACCGGATCCACCCCCTTCAAACAATGGAAGGTCGACTTGAGTCC AAAAAGGAGGATCCATGGCGGTCAAAACCCAAAACGGCGGATGAACAGTCTTTGAAAAGTACACGGATGAACAATGACTA TGAGCAGTGCACGACTGAACAGAGACTGTGAGGGTGTGTTAGGTACCAGAAACAGAGTAAGAATTAGGAACTGGAAATAC TATATTAGCACTGAATCCTCTGGAATGAACCCAGAAGCAGTGTTTTCCGAGAATATGGAAAGAGGAAAATAACATGAGCA AATTAGAGAGTGCTCAATCTCCCCCAAGTCCTAGCCAAATTCAGCCTAGGAGATTCTCTCTCCATAACTAACATATATTC CCTAAGGCTGATTTCTCTATGGTCCCCCCCTCACCCACATGGGTGCTGCCACCTCATCAGGTGGTTATTTTGAAATGCTA GCTTCTAGAAGGTGCTGTCATCAGGGACAGCTTGCCCCTGCTTGGGCCTCGTAGCATAAACCTTTCCAAATCTGGGCCTG GTAACCGGGTCTGTATCAGGGTGTTTGGGGAAGGCGGCAGGTGCGGTAGTGGCAAAGAGATCCTTTAAAACGACTGGGTG GAAGTGGATGGGCTGCGTGGTAGATGCATAGGATATCCGACAGATGTGGTAGAGGCAAAGAGGAAGGGAAGGTTGGACCA ATTGTTTGGATCTGAAAAATCCTAAAAGGCAAACGATAGAAAAATAAGGATAAAGGATAATTTTTTGGTATCTTTATTAT AGAAACTGGGAAATAAAAGATAAACAAGAACTTAGAGGCTGTTACTTCATGGCAGAGGTGATCCTTCATGCAAGAACTTG GTGGCTAGTATTATGTTGTTAATACTGTAATAGTACTGTTATTTCATGCAAGATTGAAAGCTTGTATTTGTTCCTTTTAG AATATTATTTCATTAATTTGAGAAAAAAATCTGCTATCGTTGAATAGGAATATAGAACATTTTATTTTGAACTGAAAAAA AGACTGCTAAGTTTCAACTTAATTTTCAGGAGAGTTTATTTTTTAAAATTTTTGCTGTTTTCTTTTCAGGAATGCTGTAT ATGCCTCTGTTCATATGAGGACGGAGTAGAGCTCCATGCTCTTCCCTGCAATCATCATTTCCATGCTTCATGCATAGTAA AATGGCTAAAGATGAATGCAACTTGTCCCCTTTGCAAGTACAATATTCTCAAGGGAAACGAACAGGTATAACAGAAAAAG ACGACCCTACTGGCTATTTTCACAGATATTGTGTATATGTAAATATAATTTATCAAGACAAGAAATAGTTGACCTTTTCC CAACTTTCTCGGTTTTGGTCATTGTTTTTGTAATTGTGTCTGTAGAGAAAAGATATAGATCATTTGTTAATGAATAAGCT AGCGACTTCGTCAATTGAGTATTATTTCGTCCTATTTGAAAGTTGACCAATATGTGGATTGTTTTCTTAGTTTTGGACAG ACAAAATTGTTTCATTTGCTACAGGAAACGAATAATGACAGGTTTTATGAATTTTGTATGGTGCTAAAATTTCCTGTTGT TTTATTTTCTGTAAACAGTAAATTTCCACTTGTCTCGTATGCACATTGTTCCCGCAAACAAATAATTACTACTTTAGAAT ATAAAAAATTACAAATTACAAATTATTTTTTTATTCTATTTAATTTAA
CDS sequence (LotjaGi2g1v0072000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGTCACGAACCACCGCCACGACGGAGACGCCTGAGGAGGAGCCTCAGGCACCGCTACTCCGCTCGCGCCACGACGG CGGAGGCCAGCCACCCACACTCGCGCTCCTTCTCGGTCGCGCCGTTGGCCGACGAGGCCCGTCGGTGCTGGTGCGGGAGA CAGCGGCGCGCGAGCTCGAGGAGCGGCGCGCCGACTGGGGATACTCGAAGCCGGTGGTGGCGCTTGACATGTCTTGGAAC ATGGCGTTTGTGGTGGTATCAGCGGCGATGCTTGCCTGCACCGTCGGCGAGCAACCGAACACGCCGATCCGGCTGTGGAT TGTCGGCTACGCGCTGCAGTGCCTCTTGCATGTCGTGCTGGTGTGGTTCGAGTACCGGCGTCGGAGCCGGAGGGACTCGA GGCGGCGGCGGAGGCTGGTGGAGAGCGACGCCGGAAGTACTGACGGCAGCGACAGCGATGACGGCGATGCGAACTCGTCT CGCTCCGGATTCACAAAACGATGTGAAACAATAAATACTGGGGTTTCATTCATTTGGTGGATGGTGGGCTTTTACTGGGT TGTCTCTGGTGGTGATATGCTTATGCAGGATGCCCCACGGTTGTACTGGTTGGCTGTTGTTTTTCTGGCTTTTGATGTAT TCTTTGCCATCTTCTGTGTTGTTTTGGCATGCTTGATTGGCATTGCTCTCTGTTGTTGCTTGCCCTGCATCATTGCTATT CTCTATGCTGTTGCTGGACAGGAAGGTGCTTCAGAAGCAGATCTTAGTATACTTCCGAAATACAGATTTCAAATACTAAA CAATGAGGAAAAGCCTAGTGGTGGAGCCGGATCAATGGTTCCCACAGAAACCAGCAGTGCTTACTTGGCAAATGAAAGAA CACTTTTACCTGAGGATGCGGAATGCTGTATATGCCTCTGTTCATATGAGGACGGAGTAGAGCTCCATGCTCTTCCCTGC AATCATCATTTCCATGCTTCATGCATAGTAAAATGGCTAAAGATGAATGCAACTTGTCCCCTTTGCAAGTACAATATTCT CAAGGGAAACGAACAGGTATAA
Protein sequence (LotjaGi2g1v0072000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSRTTATTETPEEEPQAPLLRSRHDGGGQPPTLALLLGRAVGRRGPSVLVRETAARELEERRADWGYSKPVVALDMSWN MAFVVVSAAMLACTVGEQPNTPIRLWIVGYALQCLLHVVLVWFEYRRRSRRDSRRRRRLVESDAGSTDGSDSDDGDANSS RSGFTKRCETINTGVSFIWWMVGFYWVVSGGDMLMQDAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAI LYAVAGQEGASEADLSILPKYRFQILNNEEKPSGGAGSMVPTETSSAYLANERTLLPEDAECCICLCSYEDGVELHALPC NHHFHASCIVKWLKMNATCPLCKYNILKGNEQV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 29 | 29 | - | – | |
| Phobius | 1 | 71 | 71 | - | – | |
| PANTHER | 14 | 353 | 340 | 7.3E-188 | – | |
| PANTHER | 14 | 353 | 340 | 7.3E-188 | – | |
| TMHMM | 71 | 93 | 23 | - | – | |
| Phobius | 72 | 91 | 20 | - | – | |
| Phobius | 92 | 102 | 11 | - | – | |
| Phobius | 103 | 125 | 23 | - | – | |
| TMHMM | 103 | 125 | 23 | - | – | |
| Phobius | 126 | 169 | 44 | - | – | |
| MobiDBLite | 141 | 162 | 22 | - | – | |
| Phobius | 170 | 188 | 19 | - | – | |
| TMHMM | 171 | 190 | 20 | - | – | |
| Phobius | 189 | 199 | 11 | - | – | |
| Phobius | 200 | 218 | 19 | - | – | |
| TMHMM | 200 | 222 | 23 | - | – | |
| Phobius | 219 | 224 | 6 | - | – | |
| TMHMM | 224 | 246 | 23 | - | – | |
| Phobius | 225 | 245 | 21 | - | – | |
| Phobius | 246 | 353 | 108 | - | – | |
| Gene3D | 264 | 348 | 85 | 1.1E-18 | ||
| SUPERFAMILY | 290 | 347 | 58 | 7.32E-20 | – | |
| CDD | 301 | 343 | 43 | 4.49659E-18 | – | |
| Pfam | 301 | 343 | 43 | 1.8E-12 | ||
| ProSiteProfiles | 302 | 343 | 42 | 12.416 | ||
| SMART | 302 | 342 | 41 | 1.6E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0072000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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