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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0076400 |
| Transcript ID | LotjaGi2g1v0076400.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | E3 ubiquitin-protein ligase RGLG2; TAIR: AT5G14420.1 RING domain ligase2; Swiss-Prot: sp|Q9LY87|RGLG2_ARATH E3 ubiquitin-protein ligase RGLG2; TrEMBL-Plants: tr|A0A0L9VN29|A0A0L9VN29_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0076400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:19970912..19976890) extracted from Lotus japonicus Gifu genome v1.2.
GTTTGAGTGGTTTATAAGTGTGAGGACCCATACACTCATTGCCTTAAGGTTTTTAGTGAAAGATGTGATGTCTGGTCCAC TTATGGTTTGCTCTTTAGCCCAATGTGGAGTTTTATCCCATTGTTTTAAACAATTTCCTTTGTTTAGGTCTTTCTTTGGC CCAACAAATTCTAGTCAGATATAGATGACTACGAGTAACTTTCACATCAGTTTTAGTCATTTAAAATTTTCTTTTATCAA ATCTAGTCATTCTCTTATTTTCCCTTTCTTCCTCTTCTCACTCTAAAGATGGCGTCTTCTGCATCGAAAACCTAGGCAAG ACCTTTTATTATCAATTGTGCGAATTGGAGCCCTAGGTTTTCATTTTAGGGTTTTTCTATTTGTTATCCCAAGTCTTGAT CACACGAGGGGCACATGCGTCGGCCAAGTCATCACTCTCTCCCGACTTTGGGTATGATATCCTTCTCTTCTCCTTCCATT AAAAAGACTAGTTTCTAACAGAGGTACAAAAGTACCAACACAGGTTGACTCGGTCGATAAGTTATAACATTTTTCCATAA AAAATTGTGTGTTTACTTTTCACCGCAGATGTAAGGACCGTGTAGATGGACAATCTATAATTACCATTATTGATAACCTA TAGTTTCGAAGTGCCTCACCAGTAGTGGTGGCCGGACACAGTCTCAACTTTTATACATCTATAATGAAGATGGTTTTTTT TTTTTGAATAGCAATGAAGATGGTTAGTTAGATTTGTTTTAATAACAGAACTAAACTAAGTTACTTAGATTTATAAAAAG ATTCGGAGGAAGTATAAATGAGAAAAAGATTCCCGTAGTACATTATTTATCAATTTTTGTTGGGTCTTCAATCGAATGAT AGTAGTTGCAGCAGACTTCTTCCTCTTGTAACCAAGAAATAAAATAAAATTGCAACAGACTCCATTTGCATTTGCATCCC TTTACCATCTTCACCTTCATCTTTTTCACTACAAAACACAAAATAATCTAAAAAAGCAGAACAAAAAGACTGCGTGAGTC TGTCTCACTCTCAGCTTTTTCAAGAATCAATTATCCAAACAAACAACCTCTCTCTCTCTCTCTCTCTCTCTCTGCATCGC CGCGCTGTCAAACTTCGACGGCGATTCCAGAATATTCCAAACGCTATGTTCCATCACCGTCCAGATCAAGGTAATTTGAG TTTGGATATAAAATTGATTTTGATTTAAAGTGTCTCTGAAAAGTTACCTTCATTTTCATGATCCAATTGAGTTTGTTTGA TTGCTGACAAAATCAACTTTAATTTAAAATAATCAAACACATGAACTTTTCGTAAAATCACGTTTTGAAAAAATCAAAGT AAACGTGATTCTGCGATTGTGATTTCACGTTTTCTGCAATGTTGTTTCGTTTTTCGCAAATCATTGCTGATGATGTTGTT CTCTCTGTGTTGGTGAATCAGGGGAAGATGATTTATTGCACTTGATAAGCATCGAAATCGAAATGTGAATGTGTAGAAAT TGAATTGCTATTGTTAGGGTAATTTAATTTAATTTTATATTTTTTTTCCTTGTACCGTTGAATGTGATTTTGTCTTGTTT TGGTGTTTGGACAACAACCCAAGTTGCCGTGTGTTGATTGTGTTTGAAGATCTATGGCGGCGCGCAATAGGCTTTTATTT TTACTTCTGTATTTATGATGATTACTTAAAGAGGTTGTATTTGTTTTCAGTCGGTGGGTTTTGTTTGTATGAATTGAATT GGTCTTGTTGGTTTGTTTCAGAATTTGCTTGGAAATTAGGAAACTTCAACCTTACAGAAGCTAACTTTATCCATATATAG CATCTGGAATTAGTTTGTGTTCATATTTGCTATCTGGGTATTTCATTTTGTGAAGCATTTTTGGGAAGGAGATAAGAGGG AGATATATAGAAATTTAGTAAAAAAATTGTTGGTTGTTATTTTGGTTTTTTCAGAGAATTGAGTTGATGGGGGGTCAAAG TTCTAAGGAGGATAATAATTTGAGGCAGAATTCATCTCTGCGTTCGAGTGCCTCTCGTTCTTCTTGGAGTCCATATCCTG ACCCGCATTCGGGTTATGGTCAAGGGGGTTATTCCTATGACCCACAACAGCCGCCTTCTTATCCTACACAAGACTATTAT GCTCCCCCACCTCCTCCTCAAAACTATGGCTATGAACCTCATGCTAGTGGTAGGGTGACTGGCCGTGATGATAAGAGGAG GTTAGAGAGGAAGTACTCGAGAATCGCTGATAATTACAACTCCATAGATGAGGTAAGAGTCCAAGAGATGCTCTGCATGT AACTTCTGTTGTTGTTGTGTTTATCTTTAGCTTATCATGAAATTAACCCCTGCATAGATATTTTTTATCCTTCCGGAAAT TGAATTACTTTTCATCACCTTTAGAGCTATGCATTTTTCTACTTTTATTTTCTTTTGATAGGCATGAGTTTGATGAAAAT AATATGGTCTTGCAATCTATATATTCTTTTCTCACTGATGGCTTCTACTTATTCATCTCTACGTTTCAGAAAAACTTTGG ATTCTTTGTGATTATTTTAATTCTTAACATTCTAGTTTTTTCGTTCATATATTTAATTACAGGTGACTGAGGCTCTTGCA CGTGCAGGCCTTGAGTCTTCCAATCTTATTCTTGGTATTGATTGCACTAAGAGCAATGAGTGGACAGGTTAGACATAGTT ATATGTTTGTAATTTTTTAAACCAAAGTTGAAATACATGCAGTGTTGTTGTGAAATATATGCTGAGCTATGTTGCTTTCA GGAAAGCATTCATTTAACAGACAAAGCTTGCATCACATTGGGAATGTTCCGAATCCATATGAACAAGCAATATCCATTAT TGGGAAAACCATGGCTGCATTTGATGAGGATAACTTGATTCCTTGTTTTGGATTTGGCGATGGTATCTTTTTCTACGTTC TCACACTTGTACATTATAGAATTTTGGTTTGTAGTTTACATGTGCTAATGGGCATTACTGTGGTATCATTGCAGCATCAA CGCATGATCAAGATGTCTTCAGTTTCTATCCAGATGAAAGATTTTGCAATGGATTTGAAGAAGTGCTGAGTCGGTACAGG GAAATTATTCCTAATATTCGACTTGCAGGTTATAAATCTACTACTTGTCTTGCTGTTTTCATGGGAACTCTTCTTATTTC TGCCATAGATATTGTAATATTGAGCTAACAAAACTTACGGTTTTATGTCAGGCCCTACTTCATTTGCACCAATCATTGAA ATGGCCATGACAATTGTTGAGCAGAGTGGAGGCCAATATCATGTTTTGGTGATAGTTGCAGATGGCCAGGTATTCTGTTC TTCATCCAATTTGCACGGAATTGACTCTGAAATCTGAATGTATCAGATAGAGTACAAAATTCTCATCTGTGACTGAGTTC CCCACCCCTTTATCCTTTCATATTTTTAACATTCTGGGTCGAACTCAGTAACTCGGGTTTTTAAGACTCAATTGCTTCAT ATCTTACCAAGATCAAACTGCAGTTACAAAAAAATACTACTTAAGTAGTTATTGTGGAGGAGAAGGAACCGAACTTGAAG ATGTTTCTAAAACACTATTGTTATTTGCTTTGGCATTTAATGTTTTATTCATGGTATTTAAGAATCTTGTAACCATCATC ATACACCCACATATACAAATCTCTAATAATCCTTTCCTTCCACCAATTTCCATTTTTATTTTTAATGTTGTAAGAAGACA TTCCCATTCTAAGGGATGAACTCGGTTAGAAGCTAGCTAATGGCATTTTTTAGTGTCTGAGCTTTATAGTTTACTGACTC CTGGGCATGTTTTGAAAGATAGTGTGTCCAAACAAAATTTTCTATTTATTTTCTAAAACATTATGAAAAAAATACAAACA GAATCAAATAGGGCTTGTGCCTGTGACAGATGGTATGCCACTTGCTCTCATCACAAAATGAATAGTTGGTGGAGTTCATG ATATATTTTCTCCAAAGTTTTAACAATTGATACTTTGGGCTCCTGATTCTTCGTTTGTTTATTTTCTTGTGTTTTCCTGA CTCTGTATGGTTTCAAAACTTCTGATTTTATATGTATGATTTTGTTTGGTGCAGGTAACAAGAAGTATTGACACTGAAAG TGGGAGGCTAAGTCCACAGGAGCAAAAGACTGTTGATGCTATTGTTGAGGCCAGGTGATTATTATGTTGTATGGTTTTGC TCAACAGTGTTTTATTTGTACGAATACATATCTTACTTAGCTGCTTTGTCACAGTAAATTTCCTCTTTCAATCATATTGG TTGGTGTTGGAGATGGACCTTGGGACATGATGAGAGAGTTTGATGATAATATCCCCTCTCGGGCCTTTGATAATTTCCAG GTAAGAAGATGCATACAAAATATTGAGTACTTTTTAAAATGTTCTAAATAATTGGAATTCATCCACTGATTTATTGTGGG GTTCTCTTTGTGCTTCTTTAGTTTGTAAATTTCACGGAAATTATGTCAAAGAACATCCCTGCTTCACGAAAAGAAGCAGC ATTTGCTCTTTCAGCATTGATGGAAATTCCTTCTCAATATAAAGCAGCAATCGAGCTTAATCTACTGGGGTAAATTTGTG ATTCTTTACCTTCGGTATCATCCTTTTTTTAGAAAAAAATTCGAGTTCTTCTTGAGACAATTTTGGTTGCTGATTGTGCT TACTGCTTATTACTCTCAAACAGTAGTCGGAATGCTACTGCTCCCCAGAGAGTTGCCCTCCCAACTCCTTCATATGGTGC AACATCTATGGGCGCTTCAAAACCTTTTGGTTCAGCGTCTTTTGGCCCTTCAAAACCTTTTGGTTCAGAATCTTTTGGCA CTTCAAAACCTTCTCATGCGACTAGCTTTGAGCCCAGTGTCCCTTCTTTCAATGACAATAGCAGTGTAGTTGGCACAGCT CCTCCGGCTCCAAGTTCTGCTTATGATAATCAGGTACGACCTGCAAAATTTTTATAATAGAAGTGTGTCATGTTCTTAAT CATGTCTTTTAGGAAAATTCTTGGGTTTATGTGAATATATGTTATTTTTTCTTGTTCCTATCTAGCTTTTTTCAGCATTT CCTTCACATGCCTCAGTTAAGAAATTAGATTAGCTGTGTAACAAGCCAGCTACTTGGCCAAATGAGGATAGAGTCATGGC ATCAATTACCTACTGCTAAATCTTGTTGCTTAGTTTCGTGGTCTTTTGCCGTTTTATATCTATAATTTAATGACTGAATA GTTGTCATAAATCCAGGTTGTAGTTTCATTATTTTAGTGTCTTGTTGCTTGCTGTGCATTTTTTATGCCTAGTGTAGGGA CTGAATTTGAAATGATTCTTGTTATTAATTTATTATAGAAGATTGGCGTACCTTATAATTAAACTTAATTGGTCTTGTGC AGCTTTGCCCTATATGTTTGACAAATTCAAAAGACATGGCTTTCGGATGTGGGCATCAGGTAAAAACAATATTTTCAATT CTTTCCAATTTTCTTGATGTGGACCTTAAGATAAGGAGAGTGCTTATGATATCTTTGTTTATGTTTACATGACAGACATG TTGTGAGTGTGGGCAAGATCTTCAGTCGTGTCCCATCTGTAGGAGCCCCATTAACACCAGAATAAAGCTTTACTAAGCGG GTTCTTTCCTTGGGGAGTAATTAATTTGTATGGTGTTGGCGAAAATTCTTTAAATTATTTTATCTGGTTTCATATAACAT TTGATCAAATCTCTGTTTCTACAAATGAAAAGATGTACCTACAGCATGTAATCATTCCATGATTTTTTTTTCTTTTCCTC ATTGCTTTTGGTTCATGACTGTAACGATTTGAAGAGTTACAGGCCTAGTGTGGTGTTTGTACAGTGTAAATGGATTATTT TGGTTTGATTTGTATTAATGAAAGCTTAGAGGTGACTTCCCAATAGAAGGAAGGGCGTG
CDS sequence (LotjaGi2g1v0076400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGGGTCAAAGTTCTAAGGAGGATAATAATTTGAGGCAGAATTCATCTCTGCGTTCGAGTGCCTCTCGTTCTTCTTG GAGTCCATATCCTGACCCGCATTCGGGTTATGGTCAAGGGGGTTATTCCTATGACCCACAACAGCCGCCTTCTTATCCTA CACAAGACTATTATGCTCCCCCACCTCCTCCTCAAAACTATGGCTATGAACCTCATGCTAGTGGTAGGGTGACTGGCCGT GATGATAAGAGGAGGTTAGAGAGGAAGTACTCGAGAATCGCTGATAATTACAACTCCATAGATGAGGTGACTGAGGCTCT TGCACGTGCAGGCCTTGAGTCTTCCAATCTTATTCTTGGTATTGATTGCACTAAGAGCAATGAGTGGACAGGAAAGCATT CATTTAACAGACAAAGCTTGCATCACATTGGGAATGTTCCGAATCCATATGAACAAGCAATATCCATTATTGGGAAAACC ATGGCTGCATTTGATGAGGATAACTTGATTCCTTGTTTTGGATTTGGCGATGCATCAACGCATGATCAAGATGTCTTCAG TTTCTATCCAGATGAAAGATTTTGCAATGGATTTGAAGAAGTGCTGAGTCGGTACAGGGAAATTATTCCTAATATTCGAC TTGCAGGCCCTACTTCATTTGCACCAATCATTGAAATGGCCATGACAATTGTTGAGCAGAGTGGAGGCCAATATCATGTT TTGGTGATAGTTGCAGATGGCCAGGTAACAAGAAGTATTGACACTGAAAGTGGGAGGCTAAGTCCACAGGAGCAAAAGAC TGTTGATGCTATTGTTGAGGCCAGTAAATTTCCTCTTTCAATCATATTGGTTGGTGTTGGAGATGGACCTTGGGACATGA TGAGAGAGTTTGATGATAATATCCCCTCTCGGGCCTTTGATAATTTCCAGTTTGTAAATTTCACGGAAATTATGTCAAAG AACATCCCTGCTTCACGAAAAGAAGCAGCATTTGCTCTTTCAGCATTGATGGAAATTCCTTCTCAATATAAAGCAGCAAT CGAGCTTAATCTACTGGGTAGTCGGAATGCTACTGCTCCCCAGAGAGTTGCCCTCCCAACTCCTTCATATGGTGCAACAT CTATGGGCGCTTCAAAACCTTTTGGTTCAGCGTCTTTTGGCCCTTCAAAACCTTTTGGTTCAGAATCTTTTGGCACTTCA AAACCTTCTCATGCGACTAGCTTTGAGCCCAGTGTCCCTTCTTTCAATGACAATAGCAGTGTAGTTGGCACAGCTCCTCC GGCTCCAAGTTCTGCTTATGATAATCAGCTTTGCCCTATATGTTTGACAAATTCAAAAGACATGGCTTTCGGATGTGGGC ATCAGACATGTTGTGAGTGTGGGCAAGATCTTCAGTCGTGTCCCATCTGTAGGAGCCCCATTAACACCAGAATAAAGCTT TACTAA
Protein sequence (LotjaGi2g1v0076400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGGQSSKEDNNLRQNSSLRSSASRSSWSPYPDPHSGYGQGGYSYDPQQPPSYPTQDYYAPPPPPQNYGYEPHASGRVTGR DDKRRLERKYSRIADNYNSIDEVTEALARAGLESSNLILGIDCTKSNEWTGKHSFNRQSLHHIGNVPNPYEQAISIIGKT MAAFDEDNLIPCFGFGDASTHDQDVFSFYPDERFCNGFEEVLSRYREIIPNIRLAGPTSFAPIIEMAMTIVEQSGGQYHV LVIVADGQVTRSIDTESGRLSPQEQKTVDAIVEASKFPLSIILVGVGDGPWDMMREFDDNIPSRAFDNFQFVNFTEIMSK NIPASRKEAAFALSALMEIPSQYKAAIELNLLGSRNATAPQRVALPTPSYGATSMGASKPFGSASFGPSKPFGSESFGTS KPSHATSFEPSVPSFNDNSSVVGTAPPAPSSAYDNQLCPICLTNSKDMAFGCGHQTCCECGQDLQSCPICRSPINTRIKL Y
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 481 | 481 | 8.8E-241 | – | |
| MobiDBLite | 1 | 32 | 32 | - | – | |
| PANTHER | 1 | 481 | 481 | 8.8E-241 | – | |
| MobiDBLite | 1 | 84 | 84 | - | – | |
| MobiDBLite | 53 | 68 | 16 | - | – | |
| SMART | 114 | 317 | 204 | 3.0E-8 | ||
| SUPERFAMILY | 115 | 298 | 184 | 6.23E-12 | ||
| Pfam | 139 | 353 | 215 | 1.3E-75 | ||
| Gene3D | 426 | 481 | 56 | 5.5E-12 | ||
| SUPERFAMILY | 432 | 477 | 46 | 1.88E-6 | – | |
| Pfam | 435 | 475 | 41 | 6.7E-9 | – | |
| CDD | 437 | 481 | 45 | 4.64703E-27 | – | |
| ProSiteProfiles | 438 | 471 | 34 | 11.029 | ||
| SMART | 438 | 470 | 33 | 0.0097 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0076400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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