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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0084300 |
| Transcript ID | LotjaGi2g1v0084300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT1G02150.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q8LPS6|PPR3_ARATH Pentatricopeptide repeat-containing protein At1g02150; TrEMBL-Plants: tr|A0A151R328|A0A151R328_CAJCA Pentatricopeptide repeat-containing protein family; Found in the gene: LotjaGi2g1v0084300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:23370603..23375325) extracted from Lotus japonicus Gifu genome v1.2.
AGCTTTGTTGGGTTGCTATTAGCTACTTGTATTAGCATGAATGTTGTTGCTTTATTCTTAATCGGATTGCTTCATTGGGA TTTTAATCTCACTAATATAAGTGCCACTACACAACCCTTAATTTTTTTTTTTGAAAGCACCATTTTCTAAAACCCAACTT CAAGAAATAAAATTACTAAAACCCAAACAAGATAAACAGTAAACTTGATTATCTTCAAACATTGTCATTTCCTCACACAC AGAGGAAGAAGAAGATGACGACGCTTCTTCAATCCTCTCTGAACAACAAAAACCTCTCTCTGTCTCTTTCATCTTCTCCC TGCTACTCTTCACCTCTTCCCTTCAAGCTCTCCACTCTCAACTTGTCTCAGACACAGAGCGTGTGTTACCAGAGTCTCTC TGTTACCTGCTCCATCTCAAAGATCCACAGTTATGGTACCGTGGACTATGAGCGCCGACCCATTGTCAGGTGGAACGATA TTTACAGGAGGATATCGTTGATGGAGAATCCGGAATTGGGTTCTGTCTCTGTGTTGAATCAGTGGGAGAATGAAGGCAAG AATCTTACTAAGTGGGAACTTTCCAGGGTTGTCAAGGAGTTGAGGAAGTATAGGAGACATAAGAGAGCGCTTGAGGTAAA ACTTCATGTTTAGAAGCTTATTGGAATATTGGGGTGTTGTTTTTCCTTGGTTACTTTGTGTAGTTTCACTGAATAAATAT TGGTTTTTTAATTTTTAATTTTTGTTTGTGGGAATTATCTGGGAGGGAGTGTTGGTTTTCTGTTTTGGTGAATTGAATGA TGCTGTGAGTGGTGGAATGTGTGTTTTTTTTTTTGGTGGGAGGGTTGGAACTTGGAAGTGTTGGCTATTTGGGTTTGATT CATTAGATTAAAGTGCATAGTTGATACTTCAGGTACTTTTGTTTTTTTTTGTGTTGAGTTGAGTAGCTAGATTTTCTTTT GGACTCTTCTAGTTTTTGTTTGATGAAGAAAATTCTGGTCCTTGAGGTTGAATAACAGTATGTGTTTGATTCTAGGTTAT TCATTGTGACATGAATATAAATGTAGTTCTACAGATTTGTGTGTATAAGCAGCATTTTTTCATGTACTGTGGTTTAGCAT CTGAATTGAAATCTTCTAGAGGTTCATGTTGGAGGGTTTTATTATATAGCATTTCCCTTGGACTTAAGTTTTGCATTTGC TGAAATCTTCACTCAGGTATTTTACTTTTAGCATTCGATTTTGGGAATTTAGAGCACGGTCTTTTGAGTCTGGGGTTACT AGTTTTTAGCATTGGAGTTAGGGATTTTAGAGTAAGGCCTTTTGTGTCTGTGTGAACCAAATAGCAAGAACAGGTGGCAG TGTTTCTCTGAATCTCCCAATTTTGTGCTTCATTTCTGTCACATGTGACATGGGAGATAAAGGGTTTATTTACATAGTTT CAAGGTTAAAAATTGGTCTAAACCTGGAAAGTTAATTAGACGAAAAATAATGAAATACTGAGTTGTTGTAAGACATCCAA TTATGTGGGACAGCATTTTCTCAGGTTTGCTCATTTGTTGTGAATTGAGATTGGAGGGTGAGACTGAGAATGAAGGTTGG GGGCAGAGCCAGGACTATCTATTTTTAAGGCTTGATAACTTATTTCTCTGCAATAATTTTTCCATCTTCCATCTTTGATT CTGCAATCACCATGGTTCAGAATTTGGCAAAAGAGTTGTCTTCAATAAAAGTGCATCTCTTTCTATTTGTTTTCTACCTG TTATGGTCGAGTTCCTTTAGCATGTTCTGGACTTTTTGAAAGTTGTATCTTCTTTGATGTTCTACCTACCAGAGATGCTG CCTGATTAAAACTGTTTGGTGCAACTTAGCTTCACCTAAAGAGAGAGCATGAGCTAGAAATGGAAAAGTATGTGAATTTA GCTTTCCATCTTCCACATCAGTCTGTCAAGAAGCCAAAATATTTTTCAAAGAAGCTTCTTTTTTGTTGCTGTATCTCACT GGATGCATGGGAAACATCCGTTTTGTTTTTTTGCTTTGCTTAAACATGGCAACTATTTTCCTCTCTATGCTCTACCTTTC TTCTTCTCTCTCTCTTTCTTTGGCTCTGCTAAAGCTATGTGTGTGTGTGTGTGTATATATTTATATTTATGGTGTGGAGG GCTATATATGTTTTAACATCTTTGGACCATCAGTCATTCTGAAGAAACAGAGATTGCTTCATCCTGTTTGGCGGAGTCAG AAAAATATAATTAAAATTTGCTATGAGAACATGTGTAATTGCAGTCTGGTTTGATTCTATAGATGTTCTGTTCCTTTAAA TCTATCAGAAATGTGCTTTCTTTACTATTGATATCATGCACTTAATTTTTTAGGGTAGACATAACAACAACAGCTACAAT AGTAGCCTGTTCCGAGTTCCCACTATAAACATAAACATAAAATTTTATAAACAGTTTCACCACTCTTATATTGTCCACTT GTTAATCCTGTGTTGATTGCAATATCCAGATTTGCAAACACTATTGCAATTGCATAATCTGGAAGTCCATTCCCCCCCCC CCCCCCCATCCCCCCACCCCCACTGCTCTATTAAATGGCATGCTTCTTTTGGAATGCGTGAAAGTATGATATCAGCTACT GTCTCTGATTGCTCTTTGCCTCAAATGTTTTATCAGCCATGAACAATTTTATGAAAGTAGTGAGTACATGTTGCAGGTGT ATGATTGGATGAACAATAGACAAGAGAGGTTCAGAGTATCTGCAAGTGATGCAGCAATTCAGTTAGATCTAGTTGCAAAA GTTCATGGAGTTTCTAGTGCAGAAAGATTTTTTCTGAACCTGACTGATAACTTAAAAGACAAGAGGACTCATGGTTCCCT GTTGAATGTATATGTGCACTACAGATTGAAGGACAAGGCGGAATCTTTACTTGACATTATGAGGAGTAAAGGGTATGTAA TACATTCACTACCATTTAATGTAATGATGACTCTGTACATGAACCTCAAGGAATATGATAAAGTTGATATGTTGATTTCA GAAATGAAAGAGAAAAACATACGGCTCGATATCTATTCATATAATATATGGTTATCTTCTGGTGAATCGATAAAAAAGAT GGAACAAGTGTTTGAACAAATGGGAAAGGATCCTGCCATTGTCCCCAACTGGAGTACATTCAGCACAATGGCTACTATAT ACATTAAGATGAATCTGTTTGAAAAAGCAGAAGACTGCTTAAGAAGGCTTGAGAGTAGAATTAAAGGTCGAGATAGAATA CCTTTTCATTACCTCCTGAGTCTGTATGGAGGTGTTGGAAACAAGGATGAAGTTTATCGCGTGTGGAGTACCTATAAATC AATTTTCCCAACTATACCAAACTTGGGATACCATGCTATTGTTTCTTCTCTGATCAGAATAGATGATATTGAGGGGGCAG AAAAGCTTTATGAGGAATGGGTTTCAGTAAGATCTTCTGATGATGCTAGACTGGGAAACCTTCTCATAGGCTGGTATGTG AAGAATGACAATATAGATAAAGCTTTGAGTTTCTTTGAGCACATGACTGATGGTGGTAGTGTTCCGAATTCGAATACATG GGAGCTTCTCTCTGAGGGCTATATTGCAGATAAGATGGTTTCTGAGGCCCTATCCTGCTTGAAAAAAGCTTTTGCCACTG ATGGTTCAAAGAGTTGGAAACCAAAGCCCTTAACCTTGTCTGCATTCTTTAAGCTTTGTCAAGACGAAGATGACGCGGCG AGCACCGAGATTTTAATTGCGTTGTTGAGGAAGTCGGGATTTCTTGAAAATGAAGCTTATGCATCAATCATTGGCTTATC ACTATCTGATGCTACTATTGGCAAAGGTGAATTGTCTAGAACTGGTGATATTGTTGACCGTGAAGATGTGGATGATGACT CTCAAATGTTGTTAAACCAACTATAGACTAGCTTTTGATACTTTTTTCTTTTTACCACCGGGAAATACTCCCTCCGGTCC TATTTATAAGCAACAAAAAAAAAATTCACATAGTTTAAGAAATGTAGTTAAACTAGATAAAATGCATTAAATTTGTCTTA AATAAAAATAAACTTCCAAAATTACCCTTTGTTATTAGTGTTGGAAAGTGAGAAAGAGAGAGAATAATTAATGAGACACA TTTTACAAATTAGAATTAATAAGGGCATCATTGGAAAAAATTAATTAATATAGCTCAAACTTTCATTTGGTTCTTATAAA AAGGACCAAGATTTTTCTTCTCTTTCATGTTTATAAATAGGAACGGAGGGAGTAGTTTGCTAGAACATAGGGGAGTTTTG GTCAAAGATGATTGTTTTTTTGTCAAGTTCCTATGCCTTATCATGACAGTAATGAAGTGCTGGCTGCTGTTTGAACTACA AAGGTTGGAATTTTTATGCTGGCTTATAACATTAGCATGTAATATTTTGCTCTAACAAGCTGATATATGTGATATGTGGC CATCCTTTGTGTATGCTTTGTATGTCTTTTTAAATCTTATTTTGTTTATATTTGAACTATAATAGAGTAGGATGATATTT TGGTCTTTGGACCATTGCTGGTAAATGGAATCATTGCTGCCCCATCACCCTTTTTCGGCGTTCTTTCCCCTATCTTAGTG CATGTTTGGATATACGGTGAAAAATTACAGTAGACAGAAATAACTTCCCTTAGCATTTGTGGCCATAGTGATTTTAACTT CAC
CDS sequence (LotjaGi2g1v0084300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACGACGCTTCTTCAATCCTCTCTGAACAACAAAAACCTCTCTCTGTCTCTTTCATCTTCTCCCTGCTACTCTTCACC TCTTCCCTTCAAGCTCTCCACTCTCAACTTGTCTCAGACACAGAGCGTGTGTTACCAGAGTCTCTCTGTTACCTGCTCCA TCTCAAAGATCCACAGTTATGGTACCGTGGACTATGAGCGCCGACCCATTGTCAGGTGGAACGATATTTACAGGAGGATA TCGTTGATGGAGAATCCGGAATTGGGTTCTGTCTCTGTGTTGAATCAGTGGGAGAATGAAGGCAAGAATCTTACTAAGTG GGAACTTTCCAGGGTTGTCAAGGAGTTGAGGAAGTATAGGAGACATAAGAGAGCGCTTGAGGTGTATGATTGGATGAACA ATAGACAAGAGAGGTTCAGAGTATCTGCAAGTGATGCAGCAATTCAGTTAGATCTAGTTGCAAAAGTTCATGGAGTTTCT AGTGCAGAAAGATTTTTTCTGAACCTGACTGATAACTTAAAAGACAAGAGGACTCATGGTTCCCTGTTGAATGTATATGT GCACTACAGATTGAAGGACAAGGCGGAATCTTTACTTGACATTATGAGGAGTAAAGGGTATGTAATACATTCACTACCAT TTAATGTAATGATGACTCTGTACATGAACCTCAAGGAATATGATAAAGTTGATATGTTGATTTCAGAAATGAAAGAGAAA AACATACGGCTCGATATCTATTCATATAATATATGGTTATCTTCTGGTGAATCGATAAAAAAGATGGAACAAGTGTTTGA ACAAATGGGAAAGGATCCTGCCATTGTCCCCAACTGGAGTACATTCAGCACAATGGCTACTATATACATTAAGATGAATC TGTTTGAAAAAGCAGAAGACTGCTTAAGAAGGCTTGAGAGTAGAATTAAAGGTCGAGATAGAATACCTTTTCATTACCTC CTGAGTCTGTATGGAGGTGTTGGAAACAAGGATGAAGTTTATCGCGTGTGGAGTACCTATAAATCAATTTTCCCAACTAT ACCAAACTTGGGATACCATGCTATTGTTTCTTCTCTGATCAGAATAGATGATATTGAGGGGGCAGAAAAGCTTTATGAGG AATGGGTTTCAGTAAGATCTTCTGATGATGCTAGACTGGGAAACCTTCTCATAGGCTGGTATGTGAAGAATGACAATATA GATAAAGCTTTGAGTTTCTTTGAGCACATGACTGATGGTGGTAGTGTTCCGAATTCGAATACATGGGAGCTTCTCTCTGA GGGCTATATTGCAGATAAGATGGTTTCTGAGGCCCTATCCTGCTTGAAAAAAGCTTTTGCCACTGATGGTTCAAAGAGTT GGAAACCAAAGCCCTTAACCTTGTCTGCATTCTTTAAGCTTTGTCAAGACGAAGATGACGCGGCGAGCACCGAGATTTTA ATTGCGTTGTTGAGGAAGTCGGGATTTCTTGAAAATGAAGCTTATGCATCAATCATTGGCTTATCACTATCTGATGCTAC TATTGGCAAAGGTGAATTGTCTAGAACTGGTGATATTGTTGACCGTGAAGATGTGGATGATGACTCTCAAATGTTGTTAA ACCAACTATAG
Protein sequence (LotjaGi2g1v0084300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTTLLQSSLNNKNLSLSLSSSPCYSSPLPFKLSTLNLSQTQSVCYQSLSVTCSISKIHSYGTVDYERRPIVRWNDIYRRI SLMENPELGSVSVLNQWENEGKNLTKWELSRVVKELRKYRRHKRALEVYDWMNNRQERFRVSASDAAIQLDLVAKVHGVS SAERFFLNLTDNLKDKRTHGSLLNVYVHYRLKDKAESLLDIMRSKGYVIHSLPFNVMMTLYMNLKEYDKVDMLISEMKEK NIRLDIYSYNIWLSSGESIKKMEQVFEQMGKDPAIVPNWSTFSTMATIYIKMNLFEKAEDCLRRLESRIKGRDRIPFHYL LSLYGGVGNKDEVYRVWSTYKSIFPTIPNLGYHAIVSSLIRIDDIEGAEKLYEEWVSVRSSDDARLGNLLIGWYVKNDNI DKALSFFEHMTDGGSVPNSNTWELLSEGYIADKMVSEALSCLKKAFATDGSKSWKPKPLTLSAFFKLCQDEDDAASTEIL IALLRKSGFLENEAYASIIGLSLSDATIGKGELSRTGDIVDREDVDDDSQMLLNQL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 42 | 523 | 482 | 8.6E-247 | – | |
| PANTHER | 42 | 523 | 482 | 8.6E-247 | – | |
| Gene3D | 105 | 257 | 153 | 7.6E-13 | ||
| ProSiteProfiles | 175 | 209 | 35 | 8.462 | ||
| Pfam | 178 | 206 | 29 | 0.064 | ||
| ProSiteProfiles | 210 | 244 | 35 | 7.848 | ||
| TIGRFAM | 214 | 245 | 32 | 9.2E-4 | ||
| Pfam | 233 | 288 | 56 | 7.2E-4 | ||
| Gene3D | 258 | 344 | 87 | 5.7E-8 | ||
| ProSiteProfiles | 278 | 308 | 31 | 6.84 | ||
| SUPERFAMILY | 279 | 449 | 171 | 2.66E-5 | ||
| Gene3D | 345 | 483 | 139 | 1.3E-13 | ||
| ProSiteProfiles | 348 | 382 | 35 | 5.437 | ||
| ProSiteProfiles | 383 | 417 | 35 | 9.175 | ||
| TIGRFAM | 388 | 418 | 31 | 3.5E-5 | ||
| Pfam | 388 | 414 | 27 | 0.0029 | ||
| ProSiteProfiles | 418 | 453 | 36 | 5.744 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0084300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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