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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0098400 |
| Transcript ID | LotjaGi2g1v0098400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|Q8LPK0|AB8A_ARATH ABC transporter A family member 8; TrEMBL-Plants: tr|A0A151QYF6|A0A151QYF6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0098400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:32182886..32186353) extracted from Lotus japonicus Gifu genome v1.2.
AATCTATCGAAGCTTCGAGCTTCTTCTTCTTCAACCTCTGGTTGTTCAATTCTTTGATGGTATCAGAGCCCTAACAAGGG TTCTGCCATCACCACAAGCTTCCGCAAACATGGTGAATACCAGGAATCTGCACAATAATGGAGGACCAAACAACAATGGA GGACCGCAAGTTCATGTGGTACAGGATCCGAGTCAGAGTACAGCATCGCCGTATTATATACATGCGAGCGAGAATCCATC TGCATTCATGGTGAATCCGCCACTGAATGGTCGAAATTACAATGGTTGGGTGCGAGCAATGAAGCGCGCGTTGGTAGCGA AGAACAAATTTCGTTTTCTCAATGGAGAAATTCCGGTGCCAAATCCTACAGATGCAATGTTCGATGCTTGGGATCGTTGC AACAACTTAATTCATTCTTGGATACTCAATTCGGTAACACCTTCTATTGCTAGCAGTATTGTTTTTGTTGAAAATGCTTG TGATGCATGGAGATATCTTAGGGATCGATTTTCTCAAGGAGACCTAGTTCGAATTTCTGAAATTCACAATGAGATTAGTT CGATGAAAAAAAATTCTATGTCTGTTGATGAATATTATACAGCTTTGAAGTCTTTGTGGGAGGAATTAGAGCATTATAGG CCAATTCCTCAATGCACTTGCACTGTACCTTGTAGGTGTGATGCAATTAGGAATGTGAAACTGTATAAAGATCAGGACAA TGTTATCAAGTTTTTACTTGGATTGAATGAAAATTTTGGTGTAGTGAAGTCACAGATTTTGATGAGTCACCCTCTTCCAC AGTTAGCTAAAGTAGTTTCACTTGCTATGCAACATGAGAGACAGAATGGAGCAGAGGAAATTGATGATAGTCAGGCTATT GTTAATGCTGCAGAAGGAAAGAAATCATTTGATAAAGGTTATGGGAGGGGTAGATCACCAGGAAATTATAGACCAAAGGA AAAATATTGCACTTATTGTAAGAAAGTGGGTCACACTGTTGATAATTGTTACAGAATTCATGGTTTTCCAACTGCTTCAG CTCCAAGATATGGAGGATCAAGTGGTCCATCTCACACAACCAGTCACGCTAATAATGCAAATGTTGAAGAATATGAAGAA GAGGAGGACACACATTCACAGAAGGAGAATGAAGAGTTGTTCACAGCAGATCAATACAAAAGAATTATTGCTATGATCCA ACATGTAAGCACTGCATCAAAGATAGAGTCAGAAGGGGGAAATGCTAGTGTGAACCATGTGGTGAAAGCATCAGGACACA CTTCAGGACATGGTAACTCCTTAGTCCTTTCTTGTTCTAGAGTTTTGTCCAGAGTCTTGTCATGCTCTAGAATCTTGTCA TGTTCTAAACAATATAACAGTAGAGACTGGATTATAGACTCAGGGGCTAGTGACCACATTTGTTTCAATAAGTTAATTTT TGAAACACTTAGAAAAGTCACTAACCCTATTGGTGTGAAGTTACCTAATGGCACTGTAATTCATACTTCTTATGTTGGTA CTGTTAGGATAACTAATTGCATTTTGCTCACACATGTTCTATATGTGCCTGCATTTGATTACAACCTGATTTCAGTGCAC AAGTTGGCTAAGAGAAATAACTTTGACGTTATTTTTGGTGCTTTTCATTGTTTTGTACAGGATGTACAAACCAAGAGGAG GATTAGTTTGGGTAGCCTCCAAGATGATGAAAATCACTTATTTCTATTGTGGTTCTCTTCCAACAAATGATCACAGTAGT GTAGCACATAGCATTGTTAAGTATTGTAATCCTGACAAGCTTTCCTCTCATCATAAAACTTATGTTATGAATCTCTCTAC TGACCAAGAACCAAATTCATATGCTGAAGCAACTAAGCATGCTCACTGGCAAGAAGCTATGAAAGCTGAGATTACAGCAT TAGAAAGAAATGGAACTTGGCAGATTGTGGATCAGTCTGCAGATGTGAAACCTATAGGAAGTAAATGGGTCTATAGAATC AAAAGACATGCAGATGGTTCATTGGCAAGATATAAAGCCAGATTAGTAGCTAAAGGCTACAATCAGATTGAAGGTCTTGA CTATTTTAACACATTTTCACCTGTTGCTAAACTCACAACAGTGAGGGTTGTTCTAGCTCTGGCAGCTGCTAGAAACTGGC ATTTACATCAACTTGATGTTGATAATGCCTTCTTACATGGGATGTTAGATGAGGATGTTTATATGAGTATTCCCTCAGGT GTTCCTACAACTAAACCAAATCAAGTCTGCAAGCTGTTGAAATCACTTTATGGCCTTAAACAGGCTAGTAGAAAATGGTA TGAGAGATTATCTGCTCATCTTATTGCCCTTGGTTATCACCAAACTGCATCTGATCATTCTTTATTCACTAAGACTCAAG ATGGTGCATTCACAGGATTATTAGTGTATGTAGATGATGTAATTTTGTTTGGGAATTCATTACTTGAATTTCAGCAAGTT AAAGATTCTCTACAGCAGGCTTTTGAAATTAAGGATTTGGGAGTTTTGAAGTATTTTCTTGGCTTAGAAGTTGCACACTC AACAACTGGTATTAATCTTTGTCAAAGGAAGTATTGTCTTGATTTGCTGAGAGATTCAGGAACATTGGGCAGCAAACCAG TTTCCACTCCTCTTGATCCCTCTATGAAGCTTACTTTGAATGAGGGAGAACCTTGCACTGATCTTGCTAGTTATAGATGT TTGGTTGGACGGTTGCTTTACTTGACTACCACTAGGCCTGACATATCCTTTGCAACTCAACAGTTGAGTCAATTCATGAG CAATCCCATGGATTCTCATTTTCAGGCTGCTGCTAGGGTTCTTAGGTATCTTAAGAATTCACCAGGTATTGGGCTTTTCT TTCCTAGAGATACTTCTATCTCATTACAAGGTTATTCAGATGCTGATTGGGCAGGGTGTTCAGATACAAGAAAGTCCATC TCTGGCTATTGCTTTTATCTTGGTAGATCCTTAATTTCATGGAAGGCAAAGAAACAACCTACAGTATCACGATCTTCTAG TGAAGCTGAGTATCGAGCTCTTGCTTATGCTACATGTGAGCTTCAATGGTTATTGTTTCTTTTACATGATTTGCAGATTC CATGTGAGAAAACCCCTGTTTTATTTTGTGATAATCAAAGTGCACTTCACATTGCTGCTAATGCAGTGTTTCATGAACGC ACAAAACATTTGGAGATTGATTGCCATATTGTTAGAGAGAAATTGCAAACTGGTGTGCTCAAATTATTGCCTATACCTAC TGCATTACAGGTTGCTGATGTGTTTACCAAGGCTTTGCAGCCCCGGATTTTTCAAGGTTTTGTTAGCAAGCTTGCTCTTA TTGACATATTTCGTCCATCAGTTTGAGGGAGGCTGTTAAATGAAGAAAAGGACCAGTGTATAAATTCTATAGAAAGCTGA GGACCTTGTTGTAATAACTAGTAGTTAG
CDS sequence (LotjaGi2g1v0098400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGAATACCAGGAATCTGCACAATAATGGAGGACCAAACAACAATGGAGGACCGCAAGTTCATGTGGTACAGGATCC GAGTCAGAGTACAGCATCGCCGTATTATATACATGCGAGCGAGAATCCATCTGCATTCATGGTGAATCCGCCACTGAATG GTCGAAATTACAATGGTTGGGTGCGAGCAATGAAGCGCGCGTTGGTAGCGAAGAACAAATTTCGTTTTCTCAATGGAGAA ATTCCGGTGCCAAATCCTACAGATGCAATGTTCGATGCTTGGGATCGTTGCAACAACTTAATTCATTCTTGGATACTCAA TTCGGTAACACCTTCTATTGCTAGCAGTATTGTTTTTGTTGAAAATGCTTGTGATGCATGGAGATATCTTAGGGATCGAT TTTCTCAAGGAGACCTAGTTCGAATTTCTGAAATTCACAATGAGATTAGTTCGATGAAAAAAAATTCTATGTCTGTTGAT GAATATTATACAGCTTTGAAGTCTTTGTGGGAGGAATTAGAGCATTATAGGCCAATTCCTCAATGCACTTGCACTGTACC TTGTAGGTGTGATGCAATTAGGAATGTGAAACTGTATAAAGATCAGGACAATGTTATCAAGTTTTTACTTGGATTGAATG AAAATTTTGGTGTAGTGAAGTCACAGATTTTGATGAGTCACCCTCTTCCACAGTTAGCTAAAGTAGTTTCACTTGCTATG CAACATGAGAGACAGAATGGAGCAGAGGAAATTGATGATAGTCAGGCTATTGTTAATGCTGCAGAAGGAAAGAAATCATT TGATAAAGGTTATGGGAGGGGTAGATCACCAGGAAATTATAGACCAAAGGAAAAATATTGCACTTATTGTAAGAAAGTGG GTCACACTGTTGATAATTGTTACAGAATTCATGGTTTTCCAACTGCTTCAGCTCCAAGATATGGAGGATCAAGTGGTCCA TCTCACACAACCAGTCACGCTAATAATGCAAATGTTGAAGAATATGAAGAAGAGGAGGACACACATTCACAGAAGGAGAA TGAAGAGTTGTTCACAGCAGATCAATACAAAAGAATTATTGCTATGATCCAACATGTAAGCACTGCATCAAAGATAGAGT CAGAAGGGGGAAATGCTAGTGTGAACCATGTGGTGAAAGCATCAGGACACACTTCAGGACATGGATGTACAAACCAAGAG GAGGATTAG
Protein sequence (LotjaGi2g1v0098400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVNTRNLHNNGGPNNNGGPQVHVVQDPSQSTASPYYIHASENPSAFMVNPPLNGRNYNGWVRAMKRALVAKNKFRFLNGE IPVPNPTDAMFDAWDRCNNLIHSWILNSVTPSIASSIVFVENACDAWRYLRDRFSQGDLVRISEIHNEISSMKKNSMSVD EYYTALKSLWEELEHYRPIPQCTCTVPCRCDAIRNVKLYKDQDNVIKFLLGLNENFGVVKSQILMSHPLPQLAKVVSLAM QHERQNGAEEIDDSQAIVNAAEGKKSFDKGYGRGRSPGNYRPKEKYCTYCKKVGHTVDNCYRIHGFPTASAPRYGGSSGP SHTTSHANNANVEEYEEEEDTHSQKENEELFTADQYKRIIAMIQHVSTASKIESEGGNASVNHVVKASGHTSGHGCTNQE ED
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 25 | 25 | - | – | |
| Pfam | 38 | 84 | 47 | 5.0E-12 | ||
| PANTHER | 69 | 368 | 300 | 1.3E-67 | – | |
| PANTHER | 69 | 368 | 300 | 1.3E-67 | – | |
| Pfam | 101 | 214 | 114 | 7.9E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0098400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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