Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi2g1v0101200 |
Transcript ID | LotjaGi2g1v0101200.4 |
Related isoforms 3 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Elongation factor 1-alpha; TAIR: AT1G07930.2 GTP binding Elongation factor Tu family protein; Swiss-Prot: sp|P0DH99|EF1A1_ARATH Elongation factor 1-alpha 1; TrEMBL-Plants: tr|F4HUA0|F4HUA0_ARATH Elongation factor 1-alpha; Found in the gene: LotjaGi2g1v0101200 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:33637930..33639393) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGTAAGGAAAAGTTTCACATCAACATTGTAGTCATTGGCCATGTTGACTCTGGGAAGTCAACAACCACTGGCCACTT GATCTACAAGCTTGGAGGAATCGACAAGCGTGTTATTGAGAGATTTGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCAT TCAAGTATGCCTGGGTGCTTGACAAGCTTAAGGCTGAGCGTGAAAGAGGAATCACAATTGATATTGCCCTGTGGAAGTTT GAGACCACCAAGTACTACTGCACTGTCATCGATGCTCCTGGACACAGGGATTTTATTAAGAATATGATTACTGGGACATC CCAAGCTGACTGTGCTGTGCTCATTATTGATTCCACTACTGGTGGTTTTGAAGCAGGTATTTCCAAGGATGGACAGACTC GTGAACATGCTCTTCTAGCTTTTACTCTTGGTGTGAAGCAGATGATCTGTTGCTGTAACAAGGTATTTGATGTTCAAGCT TTTGCTTCCTTGAGCCACCCTGCACTCTTGTTAAATATATTTCATTATTTTAATAGTTGAGTCATTATATTGCTAACTGT GTTTCTTTCTTTGAGACAGATGGATGCTACTACACCCAAGTACTCAAAGTCCAGATTTGATGAAATTGTGAAAGAAGTCT CTTCCTACTTGAAGAAGGTTGGATACAACCCTGATAAGATTCCTTTTGTTCCCATCTCTGGTTTTGAGGGAGACAACATG ATTGAGAGGTCCACAAATCTGGATTGGTACAAGGGTCCTACCCTTCTTGAGGCCCTTGACCAGATCAATGAGCCAAAGAG GCCATCAGACAAGCCCCTCAGGTTACCGCTCCAGGATGTTTACAAGATTGGAGGAATCGGGACTGTACCTGTTGGACGTG TTGAAACTGGTGTCATCAAACCTGGAATCGTGGTGACTTTTGGACCAACTGGATTGACAACTGAAGTTAAGTCTGTGGAG ATGCACCATGAAGCTCTCCAAGAGGCCCTTCCGGGTGACAATGTGGGGTTCAATGTGAAGAATGTTGCTGTTAAGGATCT TAAGCGTGGTTTTGTTGCCTCAAACTCCAAGGATGATCCTGCCAAGGAGGCTGCTAATTTTACCTCTCAGGTTATCATCA TGAATCATCCTGGTCAGATTGGAAATGGCTATGCCCCTGTTCTCGACTGTCACACCTCCCACATTGCTGTTAAGTTTGGG GAACTTTTGACAAAGATTGACAGACGATCTGGCAAAGAGCTTGAGAAAGAACCCAAGTTCTTGAAGAATGGTGATGCTGG TCTTGTGAAGATGATTCCCACTAAACCTATGGTGGTAGAAACTTTCTCTGAGTATCCTCCTCTTGGTCGGTTTGCTGTGA GGGACATGCGTCAGACTGTTGCTGTTGGAGTCATCAAGAGTGTCGAGAAGAAGGATCCTACTGGAGCCAAGGTCACCAAG GCTGCACAGAAGAAGGGGAAGTGA
CDS sequence (LotjaGi2g1v0101200.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTAAGGAAAAGTTTCACATCAACATTGTAGTCATTGGCCATGTTGACTCTGGGAAGTCAACAACCACTGGCCACTT GATCTACAAGCTTGGAGGAATCGACAAGCGTGTTATTGAGAGATTTGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCAT TCAAGTATGCCTGGGTGCTTGACAAGCTTAAGGCTGAGCGTGAAAGAGGAATCACAATTGATATTGCCCTGTGGAAGTTT GAGACCACCAAGTACTACTGCACTGTCATCGATGCTCCTGGACACAGGGATTTTATTAAGAATATGATTACTGGGACATC CCAAGCTGACTGTGCTGTGCTCATTATTGATTCCACTACTGGTGGTTTTGAAGCAGGTATTTCCAAGGATGGACAGACTC GTGAACATGCTCTTCTAGCTTTTACTCTTGGTGTGAAGCAGATGATCTGTTGCTGTAACAAGATGGATGCTACTACACCC AAGTACTCAAAGTCCAGATTTGATGAAATTGTGAAAGAAGTCTCTTCCTACTTGAAGAAGGTTGGATACAACCCTGATAA GATTCCTTTTGTTCCCATCTCTGGTTTTGAGGGAGACAACATGATTGAGAGGTCCACAAATCTGGATTGGTACAAGGGTC CTACCCTTCTTGAGGCCCTTGACCAGATCAATGAGCCAAAGAGGCCATCAGACAAGCCCCTCAGGTTACCGCTCCAGGAT GTTTACAAGATTGGAGGAATCGGGACTGTACCTGTTGGACGTGTTATCATCATGAATCATCCTGGTCAGATTGGAAATGG CTATGCCCCTGTTCTCGACTGTCACACCTCCCACATTGCTGTTAAGTTTGGGGAACTTTTGACAAAGATTGACAGACGAT CTGGCAAAGAGCTTGAGAAAGAACCCAAGTTCTTGAAGAATGGTGATGCTGGTCTTGTGAAGATGATTCCCACTAAACCT ATGGTGGTAGAAACTTTCTCTGAGTATCCTCCTCTTGGTCGGTTTGCTGTGAGGGACATGCGTCAGACTGTTGCTGTTGG AGTCATCAAGAGTGTCGAGAAGAAGGATCCTACTGGAGCCAAGGTCACCAAGGCTGCACAGAAGAAGGGGAAGTGA
Protein sequence (LotjaGi2g1v0101200.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKF ETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP KYSKSRFDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPSDKPLRLPLQD VYKIGGIGTVPVGRVIIMNHPGQIGNGYAPVLDCHTSHIAVKFGELLTKIDRRSGKELEKEPKFLKNGDAGLVKMIPTKP MVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTGAKVTKAAQKKGK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 255 | 255 | 1.3E-255 | – | |
PANTHER | 1 | 255 | 255 | 1.3E-255 | – | |
Gene3D | 1 | 228 | 228 | 1.8E-89 | – | |
SUPERFAMILY | 3 | 249 | 247 | 4.46E-80 | ||
ProSiteProfiles | 5 | 230 | 226 | 60.219 | ||
Pfam | 7 | 222 | 216 | 9.8E-54 | ||
PRINTS | 9 | 22 | 14 | 6.3E-24 | ||
CDD | 9 | 227 | 219 | 2.93099E-158 | – | |
ProSitePatterns | 61 | 76 | 16 | - | ||
PRINTS | 68 | 76 | 9 | 6.3E-24 | ||
PRINTS | 88 | 98 | 11 | 6.3E-24 | ||
PRINTS | 104 | 115 | 12 | 6.3E-24 | ||
PRINTS | 148 | 157 | 10 | 6.3E-24 | ||
Gene3D | 229 | 255 | 27 | 2.0E-8 | – | |
Pfam | 254 | 352 | 99 | 1.7E-35 | ||
SUPERFAMILY | 254 | 352 | 99 | 1.03E-38 | ||
CDD | 254 | 349 | 96 | 3.33505E-63 | – | |
PANTHER | 255 | 369 | 115 | 1.3E-255 | – | |
PANTHER | 255 | 369 | 115 | 1.3E-255 | – | |
Gene3D | 256 | 353 | 98 | 4.0E-46 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi2g1v0101200.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…