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IPR009001

Source: InterPro

Description

IPR009001 is a Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal.

<p>A β barrel of circularly permuted topology is found in the C terminus of many translation elongation and initiation factors. This domain is found in the elongation factors EF1A (or EF-Tu) of both eukaryotes and prokaryotes, which functions to recognise and transport aminoacyl-tRNA to the acceptor (A) site of the ribosome during the elongation process [[cite:PUB00011834], [cite:PUB00011832]]. This domain is also found in the initiation factor IF2 gamma subunit of eukaryotes [[cite:PUB00011835]], which functions to transport the initiator methionyl-tRNA to the ribosome. The C-terminal extension of mitochondrial EF1A (or EF-Tu) has structural similarities with DNA recognising zinc fingers, suggesting that the extension may be involved in recognition of RNA.</p>

This description is obtained from EB-eye REST.

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 55

Transcript Name Description Predicted domains Domain count
Lj0g3v0069129.1
–
Domains
13
Lj0g3v0069139.1
– Elongation factor 1-alpha (EF1-a) [Cicer arietinum] gi|3319882|emb|CAA06245.1|
Domains
16
Lj0g3v0248479.1
– PREDICTED: eukaryotic translation initiation factor 2 subunit 3-like isoform X1 [Cicer arietinum] gi|502089135|ref|XP_004488827.1|
Domains
21
Lj0g3v0344769.1
– PREDICTED: eukaryotic translation initiation factor 2 subunit 3 [Glycine max] gi|356525780|ref|XP_003531501.1|
Domains
8
Lj1g3v0296910.1
– PREDICTED: elongation factor Tu, chloroplastic-like [Glycine max] gi|356513781|ref|XP_003525588.1|
Domains
30
Lj1g3v0296920.1
– PREDICTED: elongation factor Tu, chloroplastic-like isoform 1 [Vitis vinifera] gi|225452282|ref|XP_002271032.1|
Domains
14
Lj1g3v3690420.1
– PREDICTED: elongation factor 1-alpha-like isoform 1 [Glycine max] gi|356558807|ref|XP_003547694.1|
Domains
26
Lj1g3v4408630.1
– PREDICTED: elongation factor Tu, mitochondrial-like [Glycine max] gi|356572160|ref|XP_003554238.1|
Domains
29
Lj2g3v0237250.1
– PREDICTED: elongation factor 1-alpha-like [Cicer arietinum] gi|502091438|ref|XP_004489551.1|
Domains
26
Lj2g3v0690370.1
– PREDICTED: eukaryotic peptide chain release factor GTP-binding subunit ERF3A-like [Glycine max] gi|356527880|ref|XP_003532534.1|
Domains
25
Lj2g3v0690370.2
– PREDICTED: eukaryotic peptide chain release factor GTP-binding subunit ERF3A-like [Glycine max] gi|356527880|ref|XP_003532534.1|
Domains
25
Lj3g3v0965840.1
– PREDICTED: eukaryotic translation initiation factor 2 subunit 3-like isoform X2 [Cicer arietinum] gi|502089140|ref|XP_004488828.1|
Domains
20
Lj3g3v0965840.2
– PREDICTED: eukaryotic translation initiation factor 2 subunit 3-like isoform X1 [Cicer arietinum] gi|502089135|ref|XP_004488827.1|
Domains
21
Lj4g3v1425330.1
– PREDICTED: elongation factor Tu, chloroplastic-like [Glycine max] gi|356513781|ref|XP_003525588.1|
Domains
25
Lj4g3v2628800.1
– PREDICTED: HBS1-like protein-like [Glycine max] gi|356528366|ref|XP_003532775.1|
Domains
25
Lj4g3v2628800.2
– PREDICTED: HBS1-like protein-like [Glycine max] gi|356512557|ref|XP_003524985.1|
Domains
25
Lj4g3v3114310.1
– PREDICTED: eukaryotic peptide chain release factor GTP-binding subunit ERF3A-like [Glycine max] gi|356527880|ref|XP_003532534.1|
Domains
18
Lj5g3v1699430.1
– PREDICTED: elongation factor 1-alpha-like isoform 1 [Glycine max] gi|356558807|ref|XP_003547694.1|
Domains
26
Lj6g3v1887770.1
– PREDICTED: elongation factor Tu, mitochondrial-like [Cucumis sativus] gi|449436569|ref|XP_004136065.1|
Domains
16
Lj6g3v1887830.1
– PREDICTED: eukaryotic translation initiation factor 2 subunit 3 [Glycine max] gi|356525780|ref|XP_003531501.1|
Domains
8
LotjaGi1g1v0198100.1
– Elongation factor Tu; TAIR: AT4G20360.1 RAB GTPase homolog E1B; Swiss-Prot: sp|P46280|EFTU2_SOYBN Elongation factor Tu, chloroplastic; TrEMBL-Plants: tr|K7KMT9|K7KMT9_SOYBN Elongation factor Tu; Found in the gene: LotjaGi1g1v0198100
Domains
31
LotjaGi1g1v0535000.1
– Elongation factor Tu; TAIR: AT1G04170.1 eukaryotic translation initiation factor 2 gamma subunit; Swiss-Prot: sp|Q24208|IF2G_DROME Eukaryotic translation initiation factor 2 subunit 3; TrEMBL-Plants: tr|C6TAN4|C6TAN4_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0535000
Domains
21
LotjaGi1g1v0535000.2
– Elongation factor Tu; TAIR: AT1G04170.1 eukaryotic translation initiation factor 2 gamma subunit; Swiss-Prot: sp|Q24208|IF2G_DROME Eukaryotic translation initiation factor 2 subunit 3; TrEMBL-Plants: tr|C6TAN4|C6TAN4_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0535000
Domains
21
LotjaGi1g1v0535000.3
– Elongation factor Tu; TAIR: AT1G04170.1 eukaryotic translation initiation factor 2 gamma subunit; Swiss-Prot: sp|Q24208|IF2G_DROME Eukaryotic translation initiation factor 2 subunit 3; TrEMBL-Plants: tr|C6TAN4|C6TAN4_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0535000
Domains
21
LotjaGi1g1v0614400.1
– Elongation factor 1-alpha; TAIR: AT1G07920.1 GTP binding Elongation factor Tu family protein; Swiss-Prot: sp|O24534|EF1A_VICFA Elongation factor 1-alpha; TrEMBL-Plants: tr|A0A0R0FM97|A0A0R0FM97_SOYBN Elongation factor 1-alpha; Found in the gene: LotjaGi1g1v0614400
Domains
26
LotjaGi1g1v0614400.2
– Elongation factor 1-alpha; TAIR: AT1G07920.1 GTP binding Elongation factor Tu family protein; Swiss-Prot: sp|O24534|EF1A_VICFA Elongation factor 1-alpha; TrEMBL-Plants: tr|A0A0R0FM97|A0A0R0FM97_SOYBN Elongation factor 1-alpha; Found in the gene: LotjaGi1g1v0614400
Domains
26
LotjaGi1g1v0614400.3
– Elongation factor 1-alpha; TAIR: AT1G07920.1 GTP binding Elongation factor Tu family protein; Swiss-Prot: sp|O24534|EF1A_VICFA Elongation factor 1-alpha; TrEMBL-Plants: tr|A0A0R0FM97|A0A0R0FM97_SOYBN Elongation factor 1-alpha; Found in the gene: LotjaGi1g1v0614400
Domains
26
LotjaGi1g1v0730600.1
– Elongation factor Tu; TAIR: AT4G02930.1 GTP binding Elongation factor Tu family protein; Swiss-Prot: sp|Q9ZT91|EFTM_ARATH Elongation factor Tu, mitochondrial; TrEMBL-Plants: tr|V7CYM1|V7CYM1_PHAVU Elongation factor Tu; Found in the gene: LotjaGi1g1v0730600
Domains
30
LotjaGi1g1v0730600.2
– Elongation factor Tu; TAIR: AT4G02930.1 GTP binding Elongation factor Tu family protein; Swiss-Prot: sp|Q9ZT91|EFTM_ARATH Elongation factor Tu, mitochondrial; TrEMBL-Plants: tr|A0A1J7HTE2|A0A1J7HTE2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0730600
Domains
14
LotjaGi1g1v0730600.3
– Elongation factor Tu; TAIR: AT4G02930.1 GTP binding Elongation factor Tu family protein; Swiss-Prot: sp|Q9ZT91|EFTM_ARATH Elongation factor Tu, mitochondrial; TrEMBL-Plants: tr|A0A1J7HTE2|A0A1J7HTE2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0730600
Domains
14
LotjaGi2g1v0077000.1
– Elongation factor 1-alpha; TAIR: AT1G07920.1 GTP binding Elongation factor Tu family protein; Swiss-Prot: sp|O49169|EF1A_MANES Elongation factor 1-alpha; TrEMBL-Plants: tr|B9SPV9|B9SPV9_RICCO Elongation factor 1-alpha; Found in the gene: LotjaGi2g1v0077000
Domains
27
LotjaGi2g1v0077000.2
– Elongation factor 1-alpha; TAIR: AT1G07920.1 GTP binding Elongation factor Tu family protein; Swiss-Prot: sp|O49169|EF1A_MANES Elongation factor 1-alpha; TrEMBL-Plants: tr|B9SPV9|B9SPV9_RICCO Elongation factor 1-alpha; Found in the gene: LotjaGi2g1v0077000
Domains
27
LotjaGi2g1v0077000.5
– Elongation factor 1-alpha; TAIR: AT1G07920.1 GTP binding Elongation factor Tu family protein; Swiss-Prot: sp|O49169|EF1A_MANES Elongation factor 1-alpha; TrEMBL-Plants: tr|B9SPV9|B9SPV9_RICCO Elongation factor 1-alpha; Found in the gene: LotjaGi2g1v0077000
Domains
26
LotjaGi2g1v0077000.6
– Elongation factor 1-alpha; TAIR: AT1G07930.2 GTP binding Elongation factor Tu family protein; Swiss-Prot: sp|P0DH99|EF1A1_ARATH Elongation factor 1-alpha 1; TrEMBL-Plants: tr|F4HUA0|F4HUA0_ARATH Elongation factor 1-alpha; Found in the gene: LotjaGi2g1v0077000
Domains
18
LotjaGi2g1v0101200.1
– Elongation factor 1-alpha; TAIR: AT1G07920.1 GTP binding Elongation factor Tu family protein; Swiss-Prot: sp|O64937|EF1A_ORYSJ Elongation factor 1-alpha; TrEMBL-Plants: tr|A0A1J7HKW6|A0A1J7HKW6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0101200
Domains
26
LotjaGi2g1v0101200.2
– Elongation factor 1-alpha; TAIR: AT1G07920.1 GTP binding Elongation factor Tu family protein; Swiss-Prot: sp|O64937|EF1A_ORYSJ Elongation factor 1-alpha; TrEMBL-Plants: tr|A0A1J7HKW6|A0A1J7HKW6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0101200
Domains
26
LotjaGi2g1v0101200.4
– Elongation factor 1-alpha; TAIR: AT1G07930.2 GTP binding Elongation factor Tu family protein; Swiss-Prot: sp|P0DH99|EF1A1_ARATH Elongation factor 1-alpha 1; TrEMBL-Plants: tr|F4HUA0|F4HUA0_ARATH Elongation factor 1-alpha; Found in the gene: LotjaGi2g1v0101200
Domains
18
LotjaGi3g1v0139600.1
– Elongation factor Tu; TAIR: AT1G04170.1 eukaryotic translation initiation factor 2 gamma subunit; Swiss-Prot: sp|Q2KHU8|IF2G_BOVIN Eukaryotic translation initiation factor 2 subunit 3; TrEMBL-Plants: tr|G7IJ99|G7IJ99_MEDTR Eukaryotic translation initiation factor 2 EIF2-gamma-II; Found in the gene: LotjaGi3g1v0139600
Domains
19
LotjaGi3g1v0139600.2
– Elongation factor Tu; TAIR: AT1G04170.1 eukaryotic translation initiation factor 2 gamma subunit; Swiss-Prot: sp|Q2KHU8|IF2G_BOVIN Eukaryotic translation initiation factor 2 subunit 3; TrEMBL-Plants: tr|G7IJ99|G7IJ99_MEDTR Eukaryotic translation initiation factor 2 EIF2-gamma-II; Found in the gene: LotjaGi3g1v0139600
Domains
19
LotjaGi3g1v0139600.3
– Elongation factor Tu; TAIR: AT1G04170.1 eukaryotic translation initiation factor 2 gamma subunit; Swiss-Prot: sp|Q2KHU8|IF2G_BOVIN Eukaryotic translation initiation factor 2 subunit 3; TrEMBL-Plants: tr|G7IJ99|G7IJ99_MEDTR Eukaryotic translation initiation factor 2 EIF2-gamma-II; Found in the gene: LotjaGi3g1v0139600
Domains
19
LotjaGi4g1v0228100.1
– Elongation factor Tu; TAIR: AT4G20360.1 RAB GTPase homolog E1B; Swiss-Prot: sp|P46280|EFTU2_SOYBN Elongation factor Tu, chloroplastic; TrEMBL-Plants: tr|K7KMT9|K7KMT9_SOYBN Elongation factor Tu; Found in the gene: LotjaGi4g1v0228100
Domains
32
LotjaGi4g1v0382500.1
– Elongation factor 1-alpha, putative; TAIR: AT5G10630.3 Translation elongation factor EF1A/initiation factor IF2gamma family protein; Swiss-Prot: sp|Q5R6Y0|HBS1L_PONAB HBS1-like protein; TrEMBL-Plants: tr|K7KQL0|K7KQL0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0382500
Domains
27
LotjaGi4g1v0382500.2
– Elongation factor 1-alpha, putative; TAIR: AT5G10630.1 Translation elongation factor EF1A/initiation factor IF2gamma family protein; Swiss-Prot: sp|Q5R6Y0|HBS1L_PONAB HBS1-like protein; TrEMBL-Plants: tr|K7KQL1|K7KQL1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0382500
Domains
26
LotjaGi4g1v0382500.3
– Elongation factor 1-alpha, putative; TAIR: AT5G10630.1 Translation elongation factor EF1A/initiation factor IF2gamma family protein; Swiss-Prot: sp|Q5R6Y0|HBS1L_PONAB HBS1-like protein; TrEMBL-Plants: tr|A0A0R0K1F3|A0A0R0K1F3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0382500
Domains
19
LotjaGi4g1v0382500.4
– Elongation factor 1-alpha, putative; TAIR: AT5G10630.3 Translation elongation factor EF1A/initiation factor IF2gamma family protein; Swiss-Prot: sp|Q5R6Y0|HBS1L_PONAB HBS1-like protein; TrEMBL-Plants: tr|K7KQL0|K7KQL0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0382500
Domains
27
LotjaGi4g1v0382500.5
– Elongation factor 1-alpha, putative; TAIR: AT5G10630.1 Translation elongation factor EF1A/initiation factor IF2gamma family protein; Swiss-Prot: sp|Q5R6Y0|HBS1L_PONAB HBS1-like protein; TrEMBL-Plants: tr|K7KQL1|K7KQL1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0382500
Domains
26
LotjaGi4g1v0461900.1
– Elongation factor 1 alpha; TAIR: AT1G18070.1 Translation elongation factor EF1A/initiation factor IF2gamma family protein; Swiss-Prot: sp|Q8R050|ERF3A_MOUSE Eukaryotic peptide chain release factor GTP-binding subunit ERF3A; TrEMBL-Plants: tr|I1KQH1|I1KQH1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0461900
Domains
24
LotjaGi5g1v0145300.1
– Elongation factor Tu; TAIR: AT1G04170.1 eukaryotic translation initiation factor 2 gamma subunit; Swiss-Prot: sp|Q24208|IF2G_DROME Eukaryotic translation initiation factor 2 subunit 3; TrEMBL-Plants: tr|C6TAN4|C6TAN4_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi5g1v0145300
Domains
21
LotjaGi5g1v0145300.2
– Elongation factor Tu; TAIR: AT1G04170.1 eukaryotic translation initiation factor 2 gamma subunit; Swiss-Prot: sp|Q54XD8|IF2G_DICDI Eukaryotic translation initiation factor 2 subunit 3; TrEMBL-Plants: tr|G7IJ99|G7IJ99_MEDTR Eukaryotic translation initiation factor 2 EIF2-gamma-II; Found in the gene: LotjaGi5g1v0145300
Domains
19
LotjaGi5g1v0263900.1
– Elongation factor 1-alpha; TAIR: AT1G07920.1 GTP binding Elongation factor Tu family protein; Swiss-Prot: sp|P43643|EF1A_TOBAC Elongation factor 1-alpha; TrEMBL-Plants: tr|A0A0L9VMG2|A0A0L9VMG2_PHAAN Elongation factor 1-alpha; Found in the gene: LotjaGi5g1v0263900
Domains
26
LotjaGi5g1v0263900.2
– Elongation factor 1-alpha; TAIR: AT1G07930.2 GTP binding Elongation factor Tu family protein; Swiss-Prot: sp|P0DH99|EF1A1_ARATH Elongation factor 1-alpha 1; TrEMBL-Plants: tr|F4HUA0|F4HUA0_ARATH Elongation factor 1-alpha; Found in the gene: LotjaGi5g1v0263900
Domains
18
LotjaGi5g1v0277100.1
– Elongation factor 1-alpha; TAIR: AT1G07920.1 GTP binding Elongation factor Tu family protein; Swiss-Prot: sp|O64937|EF1A_ORYSJ Elongation factor 1-alpha; TrEMBL-Plants: tr|A0A1J7I5T3|A0A1J7I5T3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0277100
Domains
26
LotjaGi5g1v0277100.2
– Elongation factor 1-alpha; TAIR: AT1G07930.2 GTP binding Elongation factor Tu family protein; Swiss-Prot: sp|O64937|EF1A_ORYSJ Elongation factor 1-alpha; TrEMBL-Plants: tr|F4HUA0|F4HUA0_ARATH Elongation factor 1-alpha; Found in the gene: LotjaGi5g1v0277100
Domains
18
LotjaGi5g1v0277100.3
– Elongation factor 1-alpha; TAIR: AT1G07920.1 GTP binding Elongation factor Tu family protein; Swiss-Prot: sp|O64937|EF1A_ORYSJ Elongation factor 1-alpha; TrEMBL-Plants: tr|A0A1J7I5T3|A0A1J7I5T3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0277100
Domains
26
LotjaGi6g1v0300500.1
– Elongation factor Tu; TAIR: AT4G02930.1 GTP binding Elongation factor Tu family protein; Swiss-Prot: sp|Q9ZT91|EFTM_ARATH Elongation factor Tu, mitochondrial; TrEMBL-Plants: tr|A0A151U0N5|A0A151U0N5_CAJCA Elongation factor Tu; Found in the gene: LotjaGi6g1v0300500
Domains
30

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
cd03707 CDD 1 1.82