Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR004160
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
or

Export options

Download the entire search result as a CSV file.

We have found 44 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.626s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0069129.1
n.a. n.a. chr0 24876359 24878394 +
2 domain predictions
 –
Lj0g3v0069139.1
n.a. elongation factor 1-alpha (EF1-a) [Cicer arietinum] gi|3319882|emb|CAA06245.1| chr0 24876556 24878645 -
2 domain predictions
 –
Lj1g3v0296910.1
n.a. PREDICTED: elongation factor Tu, chloroplastic-like [Glycine max] gi|356513781|ref|XP_003525588.1| chr1 3534273 3536548 +
2 domain predictions
 –
Lj1g3v0296920.1
n.a. PREDICTED: elongation factor Tu, chloroplastic-like isoform 1 [Vitis vinifera] gi|225452282|ref|XP_002271032.1| chr1 3535434 3537275 +
2 domain predictions
 –
Lj1g3v3690420.1
n.a. PREDICTED: elongation factor 1-alpha-like isoform 1 [Glycine max] gi|356558807|ref|XP_003547694.1| chr1 42579735 42582487 +
2 domain predictions
 –
Lj1g3v4408630.1
n.a. PREDICTED: elongation factor Tu, mitochondrial-like [Glycine max] gi|356572160|ref|XP_003554238.1| chr1 51422362 51426506 -
2 domain predictions
 –
Lj2g3v0237250.1
n.a. PREDICTED: elongation factor 1-alpha-like [Cicer arietinum] gi|502091438|ref|XP_004489551.1| chr2 4065555 4068074 -
2 domain predictions
 –
Lj2g3v0690370.1
n.a. PREDICTED: eukaryotic peptide chain release factor GTP-binding subunit ERF3A-like [Glycine max] gi|356527880|ref|XP_003532534.1| chr2 10972367 10981079 +
2 domain predictions
 –
Lj2g3v0690370.2
n.a. PREDICTED: eukaryotic peptide chain release factor GTP-binding subunit ERF3A-like [Glycine max] gi|356527880|ref|XP_003532534.1| chr2 10972367 10981613 +
2 domain predictions
 –
Lj4g3v1425330.1
n.a. PREDICTED: elongation factor Tu, chloroplastic-like [Glycine max] gi|356513781|ref|XP_003525588.1| chr4 22186873 22189124 +
2 domain predictions
 –
Lj4g3v2628800.1
n.a. PREDICTED: HBS1-like protein-like [Glycine max] gi|356528366|ref|XP_003532775.1| chr4 35798039 35804862 +
2 domain predictions
 –
Lj4g3v2628800.2
n.a. PREDICTED: HBS1-like protein-like [Glycine max] gi|356512557|ref|XP_003524985.1| chr4 35798039 35804862 +
2 domain predictions
 –
Lj4g3v3114310.1
n.a. PREDICTED: eukaryotic peptide chain release factor GTP-binding subunit ERF3A-like [Glycine max] gi|356527880|ref|XP_003532534.1| chr4 41964215 41967010 -
2 domain predictions
 –
Lj5g3v1699430.1
n.a. PREDICTED: elongation factor 1-alpha-like isoform 1 [Glycine max] gi|356558807|ref|XP_003547694.1| chr5 24693836 24695740 -
2 domain predictions
 –
Lj6g3v1887770.1
n.a. PREDICTED: elongation factor Tu, mitochondrial-like [Cucumis sativus] gi|449436569|ref|XP_004136065.1| chr6 20955588 20958018 -
2 domain predictions
 –
LotjaGi1g1v0198100.1
n.a. Elongation factor Tu; TAIR: AT4G20360.1 RAB GTPase homolog E1B; Swiss-Prot: sp|P46280|EFTU2_SOYBN Elongation factor Tu, chloroplastic; TrEMBL-Plants: tr|K7KMT9|K7KMT9_SOYBN Elongation factor Tu; Found in the gene: LotjaGi1g1v0198100 LjG1.1_chr1 41024488 41027221 -
2 domain predictions
 –
LotjaGi1g1v0614400.1
n.a. Elongation factor 1-alpha; TAIR: AT1G07920.1 GTP binding Elongation factor Tu family protein; Swiss-Prot: sp|O24534|EF1A_VICFA Elongation factor 1-alpha; TrEMBL-Plants: tr|A0A0R0FM97|A0A0R0FM97_SOYBN Elongation factor 1-alpha; Found in the gene: LotjaGi1g1v0614400 LjG1.1_chr1 116025398 116028876 +
2 domain predictions
 –
LotjaGi1g1v0614400.2
n.a. Elongation factor 1-alpha; TAIR: AT1G07920.1 GTP binding Elongation factor Tu family protein; Swiss-Prot: sp|O24534|EF1A_VICFA Elongation factor 1-alpha; TrEMBL-Plants: tr|A0A0R0FM97|A0A0R0FM97_SOYBN Elongation factor 1-alpha; Found in the gene: LotjaGi1g1v0614400 LjG1.1_chr1 116026265 116028002 +
2 domain predictions
 –
LotjaGi1g1v0614400.3
n.a. Elongation factor 1-alpha; TAIR: AT1G07920.1 GTP binding Elongation factor Tu family protein; Swiss-Prot: sp|O24534|EF1A_VICFA Elongation factor 1-alpha; TrEMBL-Plants: tr|A0A0R0FM97|A0A0R0FM97_SOYBN Elongation factor 1-alpha; Found in the gene: LotjaGi1g1v0614400 LjG1.1_chr1 116026564 116028002 +
2 domain predictions
 –
LotjaGi1g1v0730600.1
n.a. Elongation factor Tu; TAIR: AT4G02930.1 GTP binding Elongation factor Tu family protein; Swiss-Prot: sp|Q9ZT91|EFTM_ARATH Elongation factor Tu, mitochondrial; TrEMBL-Plants: tr|V7CYM1|V7CYM1_PHAVU Elongation factor Tu; Found in the gene: LotjaGi1g1v0730600 LjG1.1_chr1 130245048 130249589 -
2 domain predictions
 –
LotjaGi1g1v0730600.2
n.a. Elongation factor Tu; TAIR: AT4G02930.1 GTP binding Elongation factor Tu family protein; Swiss-Prot: sp|Q9ZT91|EFTM_ARATH Elongation factor Tu, mitochondrial; TrEMBL-Plants: tr|A0A1J7HTE2|A0A1J7HTE2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0730600 LjG1.1_chr1 130245596 130249113 -
2 domain predictions
 –
LotjaGi1g1v0730600.3
n.a. Elongation factor Tu; TAIR: AT4G02930.1 GTP binding Elongation factor Tu family protein; Swiss-Prot: sp|Q9ZT91|EFTM_ARATH Elongation factor Tu, mitochondrial; TrEMBL-Plants: tr|A0A1J7HTE2|A0A1J7HTE2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0730600 LjG1.1_chr1 130245596 130249381 -
2 domain predictions
 –
LotjaGi2g1v0077000.1
n.a. Elongation factor 1-alpha; TAIR: AT1G07920.1 GTP binding Elongation factor Tu family protein; Swiss-Prot: sp|O49169|EF1A_MANES Elongation factor 1-alpha; TrEMBL-Plants: tr|B9SPV9|B9SPV9_RICCO Elongation factor 1-alpha; Found in the gene: LotjaGi2g1v0077000 LjG1.1_chr2 20702596 20705417 +
2 domain predictions
 –
LotjaGi2g1v0077000.2
n.a. Elongation factor 1-alpha; TAIR: AT1G07920.1 GTP binding Elongation factor Tu family protein; Swiss-Prot: sp|O49169|EF1A_MANES Elongation factor 1-alpha; TrEMBL-Plants: tr|B9SPV9|B9SPV9_RICCO Elongation factor 1-alpha; Found in the gene: LotjaGi2g1v0077000 LjG1.1_chr2 20703423 20704951 +
2 domain predictions
 –
LotjaGi2g1v0077000.3
n.a. Elongation factor 1-alpha; TAIR: AT1G07920.1 GTP binding Elongation factor Tu family protein; Swiss-Prot: sp|O49169|EF1A_MANES Elongation factor 1-alpha; TrEMBL-Plants: tr|A0A1J7H1G7|A0A1J7H1G7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0077000 LjG1.1_chr2 20703495 20704951 +
2 domain predictions
 –
LotjaGi2g1v0077000.5
n.a. Elongation factor 1-alpha; TAIR: AT1G07920.1 GTP binding Elongation factor Tu family protein; Swiss-Prot: sp|O49169|EF1A_MANES Elongation factor 1-alpha; TrEMBL-Plants: tr|B9SPV9|B9SPV9_RICCO Elongation factor 1-alpha; Found in the gene: LotjaGi2g1v0077000 LjG1.1_chr2 20703505 20705129 +
2 domain predictions
 –
LotjaGi2g1v0077000.6
n.a. Elongation factor 1-alpha; TAIR: AT1G07930.2 GTP binding Elongation factor Tu family protein; Swiss-Prot: sp|P0DH99|EF1A1_ARATH Elongation factor 1-alpha 1; TrEMBL-Plants: tr|F4HUA0|F4HUA0_ARATH Elongation factor 1-alpha; Found in the gene: LotjaGi2g1v0077000 LjG1.1_chr2 20703505 20705129 +
2 domain predictions
 –
LotjaGi2g1v0101200.1
n.a. Elongation factor 1-alpha; TAIR: AT1G07920.1 GTP binding Elongation factor Tu family protein; Swiss-Prot: sp|O64937|EF1A_ORYSJ Elongation factor 1-alpha; TrEMBL-Plants: tr|A0A1J7HKW6|A0A1J7HKW6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0101200 LjG1.1_chr2 33636587 33639814 +
2 domain predictions
 –
LotjaGi2g1v0101200.2
n.a. Elongation factor 1-alpha; TAIR: AT1G07920.1 GTP binding Elongation factor Tu family protein; Swiss-Prot: sp|O64937|EF1A_ORYSJ Elongation factor 1-alpha; TrEMBL-Plants: tr|A0A1J7HKW6|A0A1J7HKW6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0101200 LjG1.1_chr2 33637850 33639393 +
2 domain predictions
 –
LotjaGi2g1v0101200.4
n.a. Elongation factor 1-alpha; TAIR: AT1G07930.2 GTP binding Elongation factor Tu family protein; Swiss-Prot: sp|P0DH99|EF1A1_ARATH Elongation factor 1-alpha 1; TrEMBL-Plants: tr|F4HUA0|F4HUA0_ARATH Elongation factor 1-alpha; Found in the gene: LotjaGi2g1v0101200 LjG1.1_chr2 33637930 33639393 +
2 domain predictions
 –
LotjaGi4g1v0228100.1
n.a. Elongation factor Tu; TAIR: AT4G20360.1 RAB GTPase homolog E1B; Swiss-Prot: sp|P46280|EFTU2_SOYBN Elongation factor Tu, chloroplastic; TrEMBL-Plants: tr|K7KMT9|K7KMT9_SOYBN Elongation factor Tu; Found in the gene: LotjaGi4g1v0228100 LjG1.1_chr4 53784477 53787804 +
2 domain predictions
 –
LotjaGi4g1v0382500.1
n.a. Elongation factor 1-alpha, putative; TAIR: AT5G10630.3 Translation elongation factor EF1A/initiation factor IF2gamma family protein; Swiss-Prot: sp|Q5R6Y0|HBS1L_PONAB HBS1-like protein; TrEMBL-Plants: tr|K7KQL0|K7KQL0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0382500 LjG1.1_chr4 76120009 76127403 +
2 domain predictions
 –
LotjaGi4g1v0382500.2
n.a. Elongation factor 1-alpha, putative; TAIR: AT5G10630.1 Translation elongation factor EF1A/initiation factor IF2gamma family protein; Swiss-Prot: sp|Q5R6Y0|HBS1L_PONAB HBS1-like protein; TrEMBL-Plants: tr|K7KQL1|K7KQL1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0382500 LjG1.1_chr4 76120009 76127496 +
2 domain predictions
 –
LotjaGi4g1v0382500.3
n.a. Elongation factor 1-alpha, putative; TAIR: AT5G10630.1 Translation elongation factor EF1A/initiation factor IF2gamma family protein; Swiss-Prot: sp|Q5R6Y0|HBS1L_PONAB HBS1-like protein; TrEMBL-Plants: tr|A0A0R0K1F3|A0A0R0K1F3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0382500 LjG1.1_chr4 76120009 76127496 +
2 domain predictions
 –
LotjaGi4g1v0382500.4
n.a. Elongation factor 1-alpha, putative; TAIR: AT5G10630.3 Translation elongation factor EF1A/initiation factor IF2gamma family protein; Swiss-Prot: sp|Q5R6Y0|HBS1L_PONAB HBS1-like protein; TrEMBL-Plants: tr|K7KQL0|K7KQL0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0382500 LjG1.1_chr4 76120009 76127496 +
2 domain predictions
 –
LotjaGi4g1v0382500.5
n.a. Elongation factor 1-alpha, putative; TAIR: AT5G10630.1 Translation elongation factor EF1A/initiation factor IF2gamma family protein; Swiss-Prot: sp|Q5R6Y0|HBS1L_PONAB HBS1-like protein; TrEMBL-Plants: tr|K7KQL1|K7KQL1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0382500 LjG1.1_chr4 76120049 76127246 +
2 domain predictions
 –
LotjaGi4g1v0461900.1
n.a. Elongation factor 1 alpha; TAIR: AT1G18070.1 Translation elongation factor EF1A/initiation factor IF2gamma family protein; Swiss-Prot: sp|Q8R050|ERF3A_MOUSE Eukaryotic peptide chain release factor GTP-binding subunit ERF3A; TrEMBL-Plants: tr|I1KQH1|I1KQH1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0461900 LjG1.1_chr4 83246251 83255858 -
2 domain predictions
 –
LotjaGi5g1v0263900.1
n.a. Elongation factor 1-alpha; TAIR: AT1G07920.1 GTP binding Elongation factor Tu family protein; Swiss-Prot: sp|P43643|EF1A_TOBAC Elongation factor 1-alpha; TrEMBL-Plants: tr|A0A0L9VMG2|A0A0L9VMG2_PHAAN Elongation factor 1-alpha; Found in the gene: LotjaGi5g1v0263900 LjG1.1_chr5 57352651 57369779 -
2 domain predictions
 –
LotjaGi5g1v0263900.2
n.a. Elongation factor 1-alpha; TAIR: AT1G07930.2 GTP binding Elongation factor Tu family protein; Swiss-Prot: sp|P0DH99|EF1A1_ARATH Elongation factor 1-alpha 1; TrEMBL-Plants: tr|F4HUA0|F4HUA0_ARATH Elongation factor 1-alpha; Found in the gene: LotjaGi5g1v0263900 LjG1.1_chr5 57367994 57369337 -
2 domain predictions
 –
LotjaGi5g1v0263900.3
n.a. Elongation factor 1-alpha; TAIR: AT1G07920.1 GTP binding Elongation factor Tu family protein; Swiss-Prot: sp|P43643|EF1A_TOBAC Elongation factor 1-alpha; TrEMBL-Plants: tr|A0A0R0FM97|A0A0R0FM97_SOYBN Elongation factor 1-alpha; Found in the gene: LotjaGi5g1v0263900 LjG1.1_chr5 57367994 57369349 -
2 domain predictions
 –
LotjaGi5g1v0277100.1
n.a. Elongation factor 1-alpha; TAIR: AT1G07920.1 GTP binding Elongation factor Tu family protein; Swiss-Prot: sp|O64937|EF1A_ORYSJ Elongation factor 1-alpha; TrEMBL-Plants: tr|A0A1J7I5T3|A0A1J7I5T3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0277100 LjG1.1_chr5 59252652 59255986 -
2 domain predictions
 –
LotjaGi5g1v0277100.2
n.a. Elongation factor 1-alpha; TAIR: AT1G07930.2 GTP binding Elongation factor Tu family protein; Swiss-Prot: sp|O64937|EF1A_ORYSJ Elongation factor 1-alpha; TrEMBL-Plants: tr|F4HUA0|F4HUA0_ARATH Elongation factor 1-alpha; Found in the gene: LotjaGi5g1v0277100 LjG1.1_chr5 59253707 59255181 -
2 domain predictions
 –
LotjaGi5g1v0277100.3
n.a. Elongation factor 1-alpha; TAIR: AT1G07920.1 GTP binding Elongation factor Tu family protein; Swiss-Prot: sp|O64937|EF1A_ORYSJ Elongation factor 1-alpha; TrEMBL-Plants: tr|A0A1J7I5T3|A0A1J7I5T3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0277100 LjG1.1_chr5 59253707 59255252 -
2 domain predictions
 –
LotjaGi6g1v0300500.1
n.a. Elongation factor Tu; TAIR: AT4G02930.1 GTP binding Elongation factor Tu family protein; Swiss-Prot: sp|Q9ZT91|EFTM_ARATH Elongation factor Tu, mitochondrial; TrEMBL-Plants: tr|A0A151U0N5|A0A151U0N5_CAJCA Elongation factor Tu; Found in the gene: LotjaGi6g1v0300500 LjG1.1_chr6 61809726 61814131 -
2 domain predictions
 –