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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0104900 |
| Transcript ID | LotjaGi2g1v0104900.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Syntaxin, putative; TAIR: AT1G08560.1 syntaxin of plants 111; Swiss-Prot: sp|Q42374|SY111_ARATH Syntaxin-related protein KNOLLE; TrEMBL-Plants: tr|V7C3E5|V7C3E5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0104900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:35114313..35116043) extracted from Lotus japonicus Gifu genome v1.2.
CAGCAACGGCTACTTACCTAAAAAAACTATCCGTTGGCACTCCGCTGGGAACTCATTAAATAAAACACCTTCAACACTTT GAATTTTCAAATCTACTCTACCCTTCATCTTCTCCGACTTCACTGATTTGCTTCTCTGTTCAAGTCCACTTCATCCTTCT TTCCTTTCTTACAACGCTAACGGGGTAAGGTGTTTCGTTTCCTATTTCGAATTCCTGACATAAACACTGATTGATTTCAC TGAGGAATTGAATTGAATTGATTTTCTGTTTTTTTTCTATACAGGGAAGTGGATTTTCCCAATTAATTTCTGAGATCCAA AGATGAACGACCTCATGACCAAGTCATTCACCAACTACGTAGATCTGAAGAAAGCAGCGATGAAAGACGTTGATCTCGAA GCAGGTCACCCTCCTCGTCCTTCATCCGATGTGGAACTAAGCTTAAGATCTTCAATGGACACTGACATGGGTCTCTTCCT GCAAGAAGCAGAGCGAGTGAGAACCGAAATCGGCGATCTCCGTGAAATTCTCGGAAAGCTCCAACAAGCCAACGAAGAGA GCAAGTCCCTTCACAAACCGGAAGCCCTGAAATCGCTCCAAACCAGAATCAACACCGACATTGTGACCCTCCTGAAGAAG GCGAGGGTGATCAGGACCCAGCTCGAAGAGATGGACCGCGCCAACGACGCTAACAGAAGGCTCTCAGGGCTCAAAGATGG GACGCCGGCGATTTACCGGACGCGAATTGCGGTGACGAATGGGCTGAGGAAGAAACTGAAGGAGCTGATGATGGAGTTTC AAGGGCTGAGGCAGAGGATGATGAGTGAGTACAGGGAAACTGTTGGGAGAAGGTATTTCACTGTGACAGGGGAAAATCCA GATGAAGAGGTGATTGAGAAGATCATTTCGAACGGTGATGAAGGAGGGTTTATGTTTTTGGGGAAGGCGGTGGAGGAGCA CGGCAGAGGGAAGGTTCTGGAAACTGTGGCGGAGATACAGGACCGGCACGAGGGCGCAAAGGAGGTGGAGAAGAGTTTGT TAGAGCTGCATCAGGTGTTTCTGGACATGGCGGTGATGGTGGAGGCGCAGGGGGAGAAGATGGATGACATTGAGCACCAC GTGCTTCATTCTTCTCACTATGTGAAGGATGGAACGAAGAACCTTCAGACAGCAAAGATGTACCAGAAGAGCAGCAGGAA GTGGATGTGTATTGGGATTATCATTCTTCTCATCCTCATTCTGGTTATTGTCATCCCCATCGTTACCAGTCTCACCAGTT CTTGAATGAAAACCATTTTCAAATGTTTGGATTGTTTTATTTCTGAGTTTTAATTTGTACGACTCATCGTCGTTTCGATT TCCAATTTGTTTAGAAGATCCTTAATGTGAATTTCCAAATTTCAATTTTAATTTACAGGGTAGAAAATCCGTGACATTTG TTATTTGTAATGCAACCTTGTAAGCCATTCGCATTGTAACCCTGTTGCAGTAGATGATTGCTCTTCTTTACAGTCTTGTG GTACGACTAGTTAGTGAGTGATATTCTTCTTTTTAATTATGTTTTGGATCTAGAATTATGTTGGGCTCATTAGATGATTG AAGGAAATTTTTCAGTGTCTTTCACAATGTTGATGGAATGCAAAAAGTTCATCACCCCCTGTAGGATTCCGTCTTTCTAG CAACCGGGACCTTTCTCCATGCTTTTTCAAAATCAATTAAAAGTAATGTGT
CDS sequence (LotjaGi2g1v0104900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACGACCTCATGACCAAGTCATTCACCAACTACGTAGATCTGAAGAAAGCAGCGATGAAAGACGTTGATCTCGAAGC AGGTCACCCTCCTCGTCCTTCATCCGATGTGGAACTAAGCTTAAGATCTTCAATGGACACTGACATGGGTCTCTTCCTGC AAGAAGCAGAGCGAGTGAGAACCGAAATCGGCGATCTCCGTGAAATTCTCGGAAAGCTCCAACAAGCCAACGAAGAGAGC AAGTCCCTTCACAAACCGGAAGCCCTGAAATCGCTCCAAACCAGAATCAACACCGACATTGTGACCCTCCTGAAGAAGGC GAGGGTGATCAGGACCCAGCTCGAAGAGATGGACCGCGCCAACGACGCTAACAGAAGGCTCTCAGGGCTCAAAGATGGGA CGCCGGCGATTTACCGGACGCGAATTGCGGTGACGAATGGGCTGAGGAAGAAACTGAAGGAGCTGATGATGGAGTTTCAA GGGCTGAGGCAGAGGATGATGAGTGAGTACAGGGAAACTGTTGGGAGAAGGTATTTCACTGTGACAGGGGAAAATCCAGA TGAAGAGGTGATTGAGAAGATCATTTCGAACGGTGATGAAGGAGGGTTTATGTTTTTGGGGAAGGCGGTGGAGGAGCACG GCAGAGGGAAGGTTCTGGAAACTGTGGCGGAGATACAGGACCGGCACGAGGGCGCAAAGGAGGTGGAGAAGAGTTTGTTA GAGCTGCATCAGGTGTTTCTGGACATGGCGGTGATGGTGGAGGCGCAGGGGGAGAAGATGGATGACATTGAGCACCACGT GCTTCATTCTTCTCACTATGTGAAGGATGGAACGAAGAACCTTCAGACAGCAAAGATGTACCAGAAGAGCAGCAGGAAGT GGATGTGTATTGGGATTATCATTCTTCTCATCCTCATTCTGGTTATTGTCATCCCCATCGTTACCAGTCTCACCAGTTCT TGA
Protein sequence (LotjaGi2g1v0104900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNDLMTKSFTNYVDLKKAAMKDVDLEAGHPPRPSSDVELSLRSSMDTDMGLFLQEAERVRTEIGDLREILGKLQQANEES KSLHKPEALKSLQTRINTDIVTLLKKARVIRTQLEEMDRANDANRRLSGLKDGTPAIYRTRIAVTNGLRKKLKELMMEFQ GLRQRMMSEYRETVGRRYFTVTGENPDEEVIEKIISNGDEGGFMFLGKAVEEHGRGKVLETVAEIQDRHEGAKEVEKSLL ELHQVFLDMAVMVEAQGEKMDDIEHHVLHSSHYVKDGTKNLQTAKMYQKSSRKWMCIGIIILLILILVIVIPIVTSLTSS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 293 | 293 | - | – | |
| PANTHER | 10 | 316 | 307 | 1.8E-144 | – | |
| PANTHER | 10 | 316 | 307 | 1.8E-144 | – | |
| SMART | 44 | 171 | 128 | 8.6E-34 | ||
| Gene3D | 45 | 179 | 135 | 5.0E-19 | – | |
| SUPERFAMILY | 47 | 277 | 231 | 9.81E-41 | ||
| CDD | 49 | 196 | 148 | 1.41779E-36 | ||
| Pfam | 50 | 257 | 208 | 4.0E-62 | ||
| Coils | 145 | 165 | 21 | - | – | |
| SMART | 217 | 284 | 68 | 2.0E-19 | ||
| Gene3D | 217 | 317 | 101 | 3.3E-31 | – | |
| CDD | 221 | 283 | 63 | 2.75549E-23 | – | |
| ProSiteProfiles | 222 | 284 | 63 | 18.032 | ||
| ProSitePatterns | 228 | 268 | 41 | - | ||
| Pfam | 260 | 310 | 51 | 3.9E-18 | ||
| Phobius | 294 | 314 | 21 | - | – | |
| TMHMM | 294 | 316 | 23 | - | – | |
| Phobius | 315 | 320 | 6 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | SNAP receptor activity | Acting as a marker to identify a membrane and interacting selectively with one or more SNAREs on another membrane to mediate membrane fusion. | ||
| Biological process | Intracellular protein transport | The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Vesicle-mediated transport | A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane. |
Expression pattern of LotjaGi2g1v0104900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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