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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0107000 |
| Transcript ID | LotjaGi2g1v0107000.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Tubulin alpha chain; TAIR: AT5G19770.1 tubulin alpha-3; Swiss-Prot: sp|Q56WH1|TBA3_ARATH Tubulin alpha-3 chain; TrEMBL-Plants: tr|A0A0L9VLH4|A0A0L9VLH4_PHAAN Tubulin alpha chain; Found in the gene: LotjaGi2g1v0107000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:36443124..36447569) extracted from Lotus japonicus Gifu genome v1.2.
ATGAGAGAGATAATAAGCATTCATATCGGACAAGCTGGAATTCAAGTTGGTAATTCATGTTGGGAGCTATATTGCCTTGA ACATGGCATTCAACCTGATGGGAAAATGCCCAGGTTTGCTTTCTATTTTTTTCTCATGTTTCAAGGAATATATATATATA TATATATATGATAATATGTTTGAGTTTCGGTTAAATGTCGATTCAAATCATACTCAAAGCTACAAAATCTTGCTTCTTCA TTTGTGATGTGAAATCTCTTAAATCTCATTCGGACCAATGCAAATGAAAAACAAACCCACAATTAATAAATTAGTTTTGA ATATATAGCGTGACAATTTCCTAAAAATTAATGTAAGATTCATATTCCTACTTCACATGTCCTGTGTTTGTGGATGTTTT TATGATCAATGTCTTGCGTTTCAAATTCTTGTACATTCTTTTATATAATCAATATCGCGTTATGTCTTTTATGCATGAAC TAAGTTGTATCGCATCACCATATCGAGCTTTATATTTTTTCGGGATTTTAATTTTTTTAGCATTGAAAATTGGAAAGTTT CATTTGATTTGATGCAATGTATCTTTGGAATTCATGTTGAGAAAATGGTGGATGCACGGACAGTGTAAACTTTTTTACAT ATGCACTCAATTGATTTTCGTTATAACCGTAATTTATTAATTTACTAATTAAATTTAAAAAGATTGGCTAGCACTTGCTT CTATGTGGCATAATATGATTGAACGTCAGTGTAAAACTTCTTTACACTTGACGGTGCATATCTATTAATCGCATTGATGT TTCTAACGTTTTTGTACCTGTATGGAGTCATTCGAAGTCAATGGTTAAAATTGAAGCATTAGCCGCCGCTTAACCATGTT TGGGTTAAATGTCGCTAAAATGTGTTTTTCCTAGAAACATTTTAGGTGTATTAACATGTATATACAATGTAATAAGAAAT TGCTTGTAGCAAGTTGATGCTACTCCACCTTCACTCACAAATACCTGCCAACTTATAAAGGTTTTTTTTTTTTAGCAAAA CTTATAAATTTAGGTCATAGGTGTATTCCTTTTTAATTTGTGAATACATTTAAATTCTTACATTTATTCGAGATATGGAT ACGTTATCGTATTAATTGAAAATCTTAAATCAAATGGTTGATTTGTAAAAGTATTGGTGGGTGTCAAAAGTAAAACAATT TGACCCTCACATTTATAAGAATTTAATTCTTTCCCCAACCAATTTGTAAGCTTCAAAAATTCTCATTATCTTGAAACTAG AATTTGGTTTTATAAACATCTTCTATTTACTTATTTGTCTCTTTTTCACTTTTTTGCACAATTAACAGTTATATGTATAT ATATGCTTGCAGTGATGCCCCAAACGAAGAACATGATGCTTTTAACACCTTCTTCAGTGAAATTGGATCTGGCCAGTTTG TTCCTAGGGCTTTATTTGTTGATTTGGAGCCAAGTGTAATAGATGAAATAAGAATCGGTGCATATAGACAACTTTTCAAT CGGGAGCAGTTAATTTCTGGCAAGGAAGATGCTGCTAATAATTTTGCAAGGGGACATTACACAGGTTAGTCTACCATTTA TAAGGACTACTTTGCGAATGTGAAAATTCTAACAAATTTTATTTATAGTAGTTACAACCTGAGTGTATTTTACTAGATAG AAAATGCTACTTAATCGGAGTGTATATATTTTGCAGTTGGAAAAGAAGTTGAAGAACTATGCCTTGATCGTATCAGAAAG TTAGCTGATAATTGTAGTGGCTTGCAAGGATTCTTGGTTTTCAATGCTGTTGGTGGTGGCACTGGCTCTGGTTTGGGATC ATTACTTTTGGAACGATTATCTGTGGATTATGGGAAGAAGTCAAAACTTGGCTTTGTCATTTTTCCTTCTCCTCAGGTCT TAACCTCTAATCCTTAGAAAATGAGAATAGAATTAAAAAAAAAATAAACTGTTAGTGAATCATATATACCCCATGTATAT ATGATTTTATATATGCCATTTTAATTATTTTCAAAGTCTTCTTTGATTTCCTTCTCAGTTTTATGAATTTGTAACCTATT TTCATTTTTCAAAACAACTTGTTTTTGAAAGCTGAATGACTTGTGATTTTAACACTAAAAACAAAATTTGATAACATCTA TGAGATGTATTGGAATTTCTAATTTGAAATCTGAAAATATGAAATGTTTTTAAGAACAGCTTTTAAAACTGTTTGTATCA ATCGATTTCATTGCTTAATTTTTTGCAAAAATGATCCCTATTTGGGACTAAAACGGTAAAAGTGTGTAAATGTGAGGGAC TAATTTTATTAATTTTTTTTCTAGAGGCACCAAAAGTGAAAAAATGTTATAAGTGAGGGACCAAAAGAGCTATTAAGCCT TTTCTATTTTTAATAACTAAAAACTTGGTTTGTAAAATTCTAATAAAATATGCTCTTTAATTAGTTTCTTATAATTCCAT AATTTTTTGTTGGTTTGTATACACAAGACATGGTGTTAATTTCTTATAATTAATGTCCTTATACTTACAGTAGTGTTGTT ATTAACATAACAGGTATCTACTGCAGTTGTTGAACCTTACAATACTGTACTTTCCAACCATTCACTTATTGAGCATAGTG ATGTAGTTGTGCTTTTGGACAATGAAGCAATATATGATATCTGCAGAAGATCATTAGACATAGAAAGACCAACTTATAGA AACTTGAACCGCTTGATCTCTCAAATCATCTCTTCACTAACCACTTCCTTGAGATTTGATGGTGCCATCAATGTAGACAT TTCTGAGTTCCAGACTAACCTCGTGCCGTATCCTCGTATCCATTTCATGCTTTCGTCTTACGCGCCTGTAATATCTTCCG CGAAGGCCTACCATGAGCAGTTATCGGTGCCTGAGATCACAAGAGCTGTGTTTGAGCCATCTAGTATGATGGTCAAGTGT GACCCGAGACATGGGAAGTACATGGCATGTTGCCTCATGTACCGAGGAGATGTTGTTCCCAAAGATGTAAATGTTTCTGT TTCAAATATCAAGACTAAGCGCCAAGTTCAGTTTGTTGACTGGTAAGTACTTTCTGATATGACTATGACTGGATGCGAAT TAAAGGGCACTATTTGGATGCTATCTTGTGTTTTTTTTTAAGTTGATAAGTTCTAATAAGTTCTCTTAAGTCGGTATTCA AACATATCTTCTTTATTTTGAGAAATAATCTATAATCTTTGTCGATTCTACTCTTTTTGCCTATTGTTTAATTGTGTAAA ATTTAGAATACAAAAAGTTAAACTAAATATCTCTGTGGAATTCACATTCATAAATAAGTAGCGTGCACCAGTTTAACGGA CTCTTGTCTGGTCTTTAAGTTGAATCTTTTTCTGCAAACTGTTGATAGTCCATTAATAGTAGAGGGAGTGATAAACTATA AACTAGGTCAGTGCAAAAAGTTATTTTTTAGAGATTTAAAGACTATGTACCTAAATCTTATGTTCTCATTCAGTGTGTCA TTCTATGTCTCATCAATTCTATGATATATTATTTAAAAACCACCCATGTAGGGTTATAAAAGTATCATACCCATTTATAT TTTTTTATAAACATTCTACAATTTGTTTGGTGAGAGTACAAAAGATTTCATTCCTACTTATTGTAAAAGATCAAGGACCA GAACTGGAATAAAGAAGAAACTATAAGTACTACTTTGTAATAATTAGTTAGTTAGTTTCTGGTTTGTTTGTCAATCTTAG TTGGCATACAACTGGAAATTTTGTCAGAGACTAAACATAGTTAGTTAGAGATTAAACATAGTATAAATAATAAAACTCTA TGTATTGTGAAGATTGATTGAATACAATTGAACAATTCAAGTTTCTATCATCTTCTTCCTCTCTAAATCTCTCGAGTTCT CTCGAATTCTTTGACTTATTAGTATATTAGACTTGAAAGACTATATGAGAAAAGTGAAAAAAAGATAGATATTATACTGA GAAAATAGAAAAAGAGAAATAATTGAATGACTACTCTTCAACTAGCCTTTTTGTGATAAAGTTATAACCTTTGGTAAAAA TGAATACTATTTTAATATTTGAAATCATGAATTTACTAATTAATGTAAATAAAGTAATTGTACGATGGCTAATTAATGTC AGGTGCCCTACTGGTTTCAAGTGTGGAATCAACTACCAGCCTCCAACAGTGGTTCCCGGAGGTGATCTTGCCGAGGTGAA GCGAGCAGTATGTATGATAAGCAACAACACAGCTGTAGCTGAGGTTTTCTCTCGCATCGATCACAAATTTGATCTCATGT ATACAAAGAGAGCATTCGTGCACTGGTATGTGAGTGAAGGAATGGAAGAAGGTGAGTTCTATGAAGCCCGTGAGGATCTT GCGGCTCTCGAAAAGGATTATGAAGAGGTTGGGGAAGATGGCGTAG
CDS sequence (LotjaGi2g1v0107000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGAGAGATAATAAGCATTCATATCGGACAAGCTGGAATTCAAGTTGGTAATTCATGTTGGGAGCTATATTGCCTTGA ACATGGCATTCAACCTGATGGGAAAATGCCCAGTGATGCCCCAAACGAAGAACATGATGCTTTTAACACCTTCTTCAGTG AAATTGGATCTGGCCAGTTTGTTCCTAGGGCTTTATTTGTTGATTTGGAGCCAAGTGTAATAGATGAAATAAGAATCGGT GCATATAGACAACTTTTCAATCGGGAGCAGTTAATTTCTGGCAAGGAAGATGCTGCTAATAATTTTGCAAGGGGACATTA CACAGTTGGAAAAGAAGTTGAAGAACTATGCCTTGATCGTATCAGAAAGTTAGCTGATAATTGTAGTGGCTTGCAAGGAT TCTTGGTTTTCAATGCTGTTGGTGGTGGCACTGGCTCTGGTTTGGGATCATTACTTTTGGAACGATTATCTGTGGATTAT GGGAAGAAGTCAAAACTTGGCTTTGTCATTTTTCCTTCTCCTCAGGTATCTACTGCAGTTGTTGAACCTTACAATACTGT ACTTTCCAACCATTCACTTATTGAGCATAGTGATGTAGTTGTGCTTTTGGACAATGAAGCAATATATGATATCTGCAGAA GATCATTAGACATAGAAAGACCAACTTATAGAAACTTGAACCGCTTGATCTCTCAAATCATCTCTTCACTAACCACTTCC TTGAGATTTGATGGTGCCATCAATGTAGACATTTCTGAGTTCCAGACTAACCTCGTGCCGTATCCTCGTATCCATTTCAT GCTTTCGTCTTACGCGCCTGTAATATCTTCCGCGAAGGCCTACCATGAGCAGTTATCGGTGCCTGAGATCACAAGAGCTG TGTTTGAGCCATCTAGTATGATGGTCAAGTGTGACCCGAGACATGGGAAGTACATGGCATGTTGCCTCATGTACCGAGGA GATGTTGTTCCCAAAGATGTAAATGTTTCTGTTTCAAATATCAAGACTAAGCGCCAAGTTCAGTTTGTTGACTGGTGCCC TACTGGTTTCAAGTGTGGAATCAACTACCAGCCTCCAACAGTGGTTCCCGGAGGTGATCTTGCCGAGGTGAAGCGAGCAG TATGTATGATAAGCAACAACACAGCTGTAGCTGAGAAGGTGAGTTCTATGAAGCCCGTGAGGATCTTGCGGCTCTCGAAA AGGATTATGAAGAGGTTGGGGAAGATGGCGTAG
Protein sequence (LotjaGi2g1v0107000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGKMPSDAPNEEHDAFNTFFSEIGSGQFVPRALFVDLEPSVIDEIRIG AYRQLFNREQLISGKEDAANNFARGHYTVGKEVEELCLDRIRKLADNCSGLQGFLVFNAVGGGTGSGLGSLLLERLSVDY GKKSKLGFVIFPSPQVSTAVVEPYNTVLSNHSLIEHSDVVVLLDNEAIYDICRRSLDIERPTYRNLNRLISQIISSLTTS LRFDGAINVDISEFQTNLVPYPRIHFMLSSYAPVISSAKAYHEQLSVPEITRAVFEPSSMMVKCDPRHGKYMACCLMYRG DVVPKDVNVSVSNIKTKRQVQFVDWCPTGFKCGINYQPPTVVPGGDLAEVKRAVCMISNNTAVAEKVSSMKPVRILRLSK RIMKRLGKMA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 392 | 392 | 1.6E-253 | – | |
| ProSitePatterns | 1 | 4 | 4 | - | ||
| SUPERFAMILY | 1 | 243 | 243 | 7.85E-94 | ||
| Gene3D | 1 | 267 | 267 | 9.4E-122 | ||
| PANTHER | 1 | 392 | 392 | 1.6E-253 | ||
| CDD | 2 | 385 | 384 | 0.0 | – | |
| Pfam | 3 | 212 | 210 | 1.8E-69 | ||
| PRINTS | 10 | 30 | 21 | 3.3E-71 | ||
| PRINTS | 18 | 33 | 16 | 3.0E-88 | ||
| PRINTS | 44 | 57 | 14 | 3.0E-88 | ||
| SMART | 48 | 245 | 198 | 2.7E-69 | ||
| PRINTS | 52 | 71 | 20 | 3.3E-71 | ||
| PRINTS | 87 | 100 | 14 | 3.0E-88 | ||
| PRINTS | 94 | 105 | 12 | 3.3E-71 | ||
| PRINTS | 107 | 131 | 25 | 3.3E-71 | ||
| PRINTS | 119 | 127 | 9 | 3.0E-88 | ||
| PRINTS | 133 | 151 | 19 | 3.3E-71 | ||
| ProSitePatterns | 141 | 147 | 7 | - | ||
| PRINTS | 147 | 159 | 13 | 3.0E-88 | ||
| PRINTS | 152 | 173 | 22 | 3.3E-71 | ||
| PRINTS | 160 | 171 | 12 | 3.0E-88 | ||
| PRINTS | 177 | 190 | 14 | 3.3E-71 | ||
| PRINTS | 191 | 211 | 21 | 3.3E-71 | ||
| PRINTS | 213 | 225 | 13 | 3.0E-88 | ||
| SUPERFAMILY | 245 | 389 | 145 | 1.53E-58 | ||
| SMART | 247 | 392 | 146 | 1.3E-49 | ||
| Pfam | 262 | 389 | 128 | 5.1E-49 | ||
| Gene3D | 268 | 382 | 115 | 7.9E-63 | ||
| PRINTS | 273 | 288 | 16 | 3.0E-88 | ||
| PRINTS | 320 | 341 | 22 | 3.0E-88 | ||
| PRINTS | 346 | 359 | 14 | 3.0E-88 | ||
| PRINTS | 359 | 378 | 20 | 3.0E-88 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | Structural constituent of cytoskeleton | The action of a molecule that contributes to the structural integrity of a cytoskeletal structure. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. | ||
| Cellular component | Microtubule | Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle. | ||
| Biological process | Microtubule-based process | Any cellular process that depends upon or alters the microtubule cytoskeleton, that part of the cytoskeleton comprising microtubules and their associated proteins. |
Expression pattern of LotjaGi2g1v0107000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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