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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0123800 |
| Transcript ID | LotjaGi2g1v0123800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein, putative; TAIR: AT5G42450.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9FIH2|PP414_ARATH Pentatricopeptide repeat-containing protein At5g42450, mitochondrial; TrEMBL-Plants: tr|K7MI15|K7MI15_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0123800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:45401027..45403213) extracted from Lotus japonicus Gifu genome v1.2.
GTCAATGAGACATGAGAGATATCTCTCTTTAAAAAACTATTTTCTATTCTTTTCATCTTCTTTTTCGTATGCTCATACAT ACTATAGAATCTGCCCATTATCATTTGTTTTTTTAGATTAACTTGTACTCTCCGGTTGAATTCATGTATGGCTACTCGCC ACGAGAAGACAATGTTAGTTTGAGGGAAAACACCCCAATTCCTGGGTTCTACAAAGGGTTGTGATGTGAAAACTTCTAGC GAACGTTAGATGAGGACTCACATGAAAAACTTAGTTTCAAGACTCTCTGTACCTACATGGATCACACACCAAGTAGTTTC TTGTGGCTATATAACCAAAACCGTTCATACCCATTATCATTCCCTTGCCACCAAGCATGAGAACACCGTTGTACAAAAAG ACATTATTCCATATGGTCTTGATCCAACCACTTTTCAAGTTGCCTGCCACATGTTTGATGAAATGTCTGACTTGACTGTT GAATCAGCCACCACCATAATTTGCGGCTTCGCCAAGCGGCACTGCCATGAAGACGCTATTCATCTTTTCTCAAGAATGCT TGCCTCCAAAATTAGACCCAATGAGTTCACATTTGGGACTGTGCTTCACTCCTCCACTGTACTCAGAAATGTTGTTATTG GTAGGCAGCTTCATGCTTGTGCAACAAAAATTGGCCTTGCTTCTAATGTATTTGTTGGTAGTGCACTTCTTGATTTGTAT GTCAAGTTGAGTACTATAGAAGAAGCCCAGAAGGCTTTCGGAGATACCCAACATCCCAATGTGGTGTCTTATACAGCTCT GGTTTGTGGGTATTTGAAGAGAGGTAGGTTTGAAGATGCTTTGCAGGTTTTTCATGAGATGCCTGAGAGGAATGTTGTCT CGTGGAATGCAATGGTTGGTGGGTGCAGCCAAACAGGCCATAATGAAGAAGCTGTGAATTTTTTTATTGACATGCTTCGA GAAGGATTTATTCCCACTGAATCTACATTTCCCTCTGTCATTACTGCAGCTGCAAATATAGCCGCCCTTGGAATGGGGAA AAGTTTCCATGCATGTGCTATCAAGTTTTTGGGTAAGCTTGACGTGTTTGTTGGTAATTCACTTATCAGCTTTTATGCAA AATGTGGAAGCATGGAAGACAGCCTCCTAATGTTTAACAAGCTTTTAAAAAGGAACATAGTTTCATGCAATGCTGTGGTA TGTGGATATGCACAGAATGGAAGAGGTGTTGAAGCAATAAGCTTTTTCAAAAAAATGGGTTCTGCAGGATATAAACCCAA TGGGGTTTCACTTCTTGGGCTACTCTCGGCTTGTAATCATGCTGGTCTTGTTAATGAGGGCTACTCATATTTCAACAAAG CCAGGCTTGAGAGCCCTAGTTTGCTAAAACCTGAGCATTATGCTTGTATGGTTGACTTGCTTGCACGCTCTGGGCGTTTT AAAGAAGCTGAAGATTTCCTTGCCAGTATACCTTTTGACCCTGGAATTGGGTTTTGGAAGGCGTTACTTGGAGGGTGCCA AATCCACTCTAACATCAAGTTGGGGGAGCTTGCAGCAAGCAAGATTCTGGCTTTGGATCCTGATGATGTATCATCATATG TGATGCTATCAAATACTCATTCAGCAGCAGGTAGGTGGTCAGATGCTTCAACTCTAAGGACAGAGATGAAGGGAAAAGGG ATGAAGAGGATTCCAGGTTGCAGTTGGGTTGAAGCCAGAGGCAAAATTTGTGCTTTTCTTAATGCAGACCAGAATAATGA TAGACGTGATGAAATTTATGTGCTACTTAGGTTTTTCTATGATCATGTAAGGGATAATGAGGTTTCGGAATTGCTCAACA TTCATTGCAATTTCAGTTCAGCATAAGTAATGCGCATAGTTCTTTTTGATATAGGCTTTTGCCATTTTGAGTTTTAAAAG GGTTGAGTTTTATTTTCTTGTATACTTGAGTATTATTTTTGTTCAGCAAGATGAGCCTGGCCATTGTGCTGCTCAGAAAT AGAAAAACCTTTACCAGAGCAATTCTGAGGCTAGTTACTGAAGTTGTAAGTTGTAACCAAAGCTAAGGATGGCGGAGTTC ATGACAATTTTCTTGTCTCATAAAACTCATTCTGAAAATTCTCATACTAACTTATATGATTACAGGCCCTGTTTCGTATT CTTCAATTCCTCAAGGTTTAGATGGAA
CDS sequence (LotjaGi2g1v0123800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGACTCACATGAAAAACTTAGTTTCAAGACTCTCTGTACCTACATGGATCACACACCAAGTAGTTTCTTGTGGCTA TATAACCAAAACCGTTCATACCCATTATCATTCCCTTGCCACCAAGCATGAGAACACCGTTGTACAAAAAGACATTATTC CATATGGTCTTGATCCAACCACTTTTCAAGTTGCCTGCCACATGTTTGATGAAATGTCTGACTTGACTGTTGAATCAGCC ACCACCATAATTTGCGGCTTCGCCAAGCGGCACTGCCATGAAGACGCTATTCATCTTTTCTCAAGAATGCTTGCCTCCAA AATTAGACCCAATGAGTTCACATTTGGGACTGTGCTTCACTCCTCCACTGTACTCAGAAATGTTGTTATTGGTAGGCAGC TTCATGCTTGTGCAACAAAAATTGGCCTTGCTTCTAATGTATTTGTTGGTAGTGCACTTCTTGATTTGTATGTCAAGTTG AGTACTATAGAAGAAGCCCAGAAGGCTTTCGGAGATACCCAACATCCCAATGTGGTGTCTTATACAGCTCTGGTTTGTGG GTATTTGAAGAGAGGTAGGTTTGAAGATGCTTTGCAGGTTTTTCATGAGATGCCTGAGAGGAATGTTGTCTCGTGGAATG CAATGGTTGGTGGGTGCAGCCAAACAGGCCATAATGAAGAAGCTGTGAATTTTTTTATTGACATGCTTCGAGAAGGATTT ATTCCCACTGAATCTACATTTCCCTCTGTCATTACTGCAGCTGCAAATATAGCCGCCCTTGGAATGGGGAAAAGTTTCCA TGCATGTGCTATCAAGTTTTTGGGTAAGCTTGACGTGTTTGTTGGTAATTCACTTATCAGCTTTTATGCAAAATGTGGAA GCATGGAAGACAGCCTCCTAATGTTTAACAAGCTTTTAAAAAGGAACATAGTTTCATGCAATGCTGTGGTATGTGGATAT GCACAGAATGGAAGAGGTGTTGAAGCAATAAGCTTTTTCAAAAAAATGGGTTCTGCAGGATATAAACCCAATGGGGTTTC ACTTCTTGGGCTACTCTCGGCTTGTAATCATGCTGGTCTTGTTAATGAGGGCTACTCATATTTCAACAAAGCCAGGCTTG AGAGCCCTAGTTTGCTAAAACCTGAGCATTATGCTTGTATGGTTGACTTGCTTGCACGCTCTGGGCGTTTTAAAGAAGCT GAAGATTTCCTTGCCAGTATACCTTTTGACCCTGGAATTGGGTTTTGGAAGGCGTTACTTGGAGGGTGCCAAATCCACTC TAACATCAAGTTGGGGGAGCTTGCAGCAAGCAAGATTCTGGCTTTGGATCCTGATGATGTATCATCATATGTGATGCTAT CAAATACTCATTCAGCAGCAGGTAGGTGGTCAGATGCTTCAACTCTAAGGACAGAGATGAAGGGAAAAGGGATGAAGAGG ATTCCAGGTTGCAGTTGGGTTGAAGCCAGAGGCAAAATTTGTGCTTTTCTTAATGCAGACCAGAATAATGATAGACGTGA TGAAATTTATGTGCTACTTAGGTTTTTCTATGATCATGTAAGGGATAATGAGGTTTCGGAATTGCTCAACATTCATTGCA ATTTCAGTTCAGCATAA
Protein sequence (LotjaGi2g1v0123800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRTHMKNLVSRLSVPTWITHQVVSCGYITKTVHTHYHSLATKHENTVVQKDIIPYGLDPTTFQVACHMFDEMSDLTVESA TTIICGFAKRHCHEDAIHLFSRMLASKIRPNEFTFGTVLHSSTVLRNVVIGRQLHACATKIGLASNVFVGSALLDLYVKL STIEEAQKAFGDTQHPNVVSYTALVCGYLKRGRFEDALQVFHEMPERNVVSWNAMVGGCSQTGHNEEAVNFFIDMLREGF IPTESTFPSVITAAANIAALGMGKSFHACAIKFLGKLDVFVGNSLISFYAKCGSMEDSLLMFNKLLKRNIVSCNAVVCGY AQNGRGVEAISFFKKMGSAGYKPNGVSLLGLLSACNHAGLVNEGYSYFNKARLESPSLLKPEHYACMVDLLARSGRFKEA EDFLASIPFDPGIGFWKALLGGCQIHSNIKLGELAASKILALDPDDVSSYVMLSNTHSAAGRWSDASTLRTEMKGKGMKR IPGCSWVEARGKICAFLNADQNNDRRDEIYVLLRFFYDHVRDNEVSELLNIHCNFSSA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 61 | 129 | 69 | 4.0E-10 | ||
| ProSiteProfiles | 76 | 110 | 35 | 8.988 | ||
| TIGRFAM | 81 | 112 | 32 | 6.6E-6 | ||
| Pfam | 81 | 106 | 26 | 0.046 | ||
| PANTHER | 130 | 204 | 75 | 4.1E-85 | – | |
| Gene3D | 132 | 261 | 130 | 8.7E-27 | ||
| Pfam | 175 | 205 | 31 | 1.8E-7 | ||
| ProSiteProfiles | 177 | 211 | 35 | 12.452 | ||
| SUPERFAMILY | 177 | 472 | 296 | 1.56E-6 | ||
| TIGRFAM | 179 | 210 | 32 | 3.1E-9 | ||
| Pfam | 207 | 254 | 48 | 4.2E-10 | ||
| PANTHER | 209 | 256 | 48 | 4.1E-85 | – | |
| TIGRFAM | 210 | 243 | 34 | 1.4E-4 | ||
| ProSiteProfiles | 212 | 242 | 31 | 8.681 | ||
| PANTHER | 260 | 474 | 215 | 4.1E-85 | – | |
| Gene3D | 263 | 379 | 117 | 3.9E-20 | ||
| ProSiteProfiles | 278 | 308 | 31 | 7.947 | ||
| Pfam | 309 | 355 | 47 | 3.3E-7 | ||
| ProSiteProfiles | 309 | 343 | 35 | 11.29 | ||
| TIGRFAM | 311 | 344 | 34 | 3.1E-7 | ||
| ProSiteProfiles | 344 | 378 | 35 | 5.141 | ||
| Gene3D | 380 | 490 | 111 | 6.3E-6 | ||
| ProSiteProfiles | 380 | 410 | 31 | 6.555 | ||
| Pfam | 384 | 404 | 21 | 0.82 | ||
| ProSiteProfiles | 446 | 480 | 35 | 8.473 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0123800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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