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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0147200 |
| Transcript ID | LotjaGi2g1v0147200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Rhomboid-like protein; TAIR: AT1G63120.1 RHOMBOID-like 2; Swiss-Prot: sp|Q9CAN1|RBL2_ARATH RHOMBOID-like protein 2; TrEMBL-Plants: tr|A0A151U6I6|A0A151U6I6_CAJCA Rhomboid-like protein; Found in the gene: LotjaGi2g1v0147200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:52821285..52825734) extracted from Lotus japonicus Gifu genome v1.2.
GGAATAATAAAATTGTACTTATTCATTAAGGTTAAGGGTGTCAGGGTGTGACACAAATTTTTAAAAAAGAAAAATAACAA GTTTAAACTTTTACTCCAAGCTTATAATGAGGCAGTTACAAACTTGAGATCTCTCCCTCCACCCTTTCCCTTTCCCTTTC TTTCTCAGTTTCTTAAGAATTCATTCAGATTGAAGCCCCTTCTCACCAAACCAAACCCATCTCCACCTTCTCTAGAAGAA AAATTTGGGAATTTGGTGTGGTGGGTTGGTTTGAATCTGAGAAAAATGTCACGGAGAGATCTAGAAGGTGGCAGAGGAAG CAAGAGAGCAGCATCAAATGCTTATGATCCAGAAACCCATTGGACATCATGGCTTGTGCCTCTGTTTGTGGCGGTCAATG TTGTTCTTTTCATTGCCGCCATGTATGTTAACAATTGTCCTCGTAAGAATCCTGGCTTTGATGGTGACTGTGTCGCCAGG TTCCTGGGTAGATTCTCCTTTCAGCCTCTCCGGGAGAATCCACTGTTTGGACCTTCTTCTGCGACGTAAGAGCTGAATAA CTGGTTTTTCTTCAGTACCCATGATTCATTTTTCAATTTTTGATTGATTTGTTATGGTTTTGTTGATTTTGGGTGTTTTT TTTTTATGTTTTGAGTATTAATTCCAGCTTTCAGTGGAACTGCCTTTGATTTTGATCTTGTTTTAGCTCATGGGGCATGA AAATTTGGTTGATTTAGTGAATTGGGGGTCACTTTTTCTTGATATAATCTTTGTTTTTTTTTATGTCAAAGCTCTAAAAC TTGGAATTTGTTGATTGTATGAAATGAATTTCAGAATTCTCTTCATTACCGGCTTAAATTTTGGACTTGAATAACTGTCT TGGTAAATAAATATTGGGTGAACTTGGTGAAGTCAAATTTTCACTTTTATATAATTGCTTGTAGAATTGATTGGATCAGT GAAATTGTTGTCTTTTATTTCACAATCCTAATTCTATTTCACTTCCTTTCAACCTCATGATTAGTAGCATTTTTAGTACT CAATTTCATCTTTCATGTTATCAGGAAAAAAATAAAATAAAGAATATGACTACAATCAAATGTGGTTTTCTCAAATGTTT GAGCCTTGCATGAACTCTTAGTGTCCGGGTATAGATTTTTGAAGGAAATTAACTCATTTAATTTTTTGTTGATTTTTGAA GGTTAACAAAGATGGGAGCTCTTAAGTGGGACGATGTTGTGAATCGTCACCAGGGATGGAGACTTTTCACATGTATTTGG TTACATGCTGGAATTATTCATTTGGCAGCAAATATGTTGAGTCTGGTTTTCATTGGCATTCGCCTTGAACAACAATTTGG GTTTGGTATGTTTCCTTTCCCATGTTATTTTATCATCCGGTCACTGAAGCAATATCATTTAGTGAATTTTATAAAAAAAA AAAGTATTAGGAATGGAGAACTTTAAACTTTTCAATTTTAACTTTTATACCTAAGAGAAGACAACCTGTTCCAAAGCTTA CTTACCTATTGAGTTTATGTGTTTAAGTTCTACATTATGACCAATCATTTTGTTAAAATACTGGCAGTGAGGATAGGAAT CATTTACCTGTTGTCCGGATTCGGTGGGAGTGTATTGTCATCTCTATTTATTAGAAACAACATCTCCGTTGGTGCTTCTA GTGCTTTGTTTGGACTTCTTGGAGCAATGCTCTCAGAACTTATCACAAACTGGAGTATTTACTCCAATAAAGTGAGTGTT GCTAATCACTGCTTCCAATCTTATTCATGTATCCTTGATTTGAAAAACACTTTGGTCTTCAAAATTATGTCTCTTTTACA CGAGCATTGTTCCTATATAATGTAATGGGATTCAGTTTCAATTTTAACAACTCTACTTTGTATTTTGCAGGCAGCTGCTT TGCTCACACTAGTCCTTATTATTGCTGTCAATCTTGCCATTGGCATGTTGCCACATGTTGATAATTTTGCTCATATAGGA GGATTCCTAGCAGGATTTCTTCTTGGTTTTATTTTCCTACCCCGTCCTCAATTCGGGTGGTCAGAGCAGCAACATCTTCC TACTGGTGTTCGTGTAAAATCAAAGTACAAGGCTTACCAATATGTTCTATGGATTGTCTCTGCTGTTCTATTCATCGCTG GGTAAGCTCCTTTCTTAAATCTTCATAAGGGTGTTATGACTTACGCTTAAAACTAAGCTTTTTCATTAAAGGCAGGCAAG TTTATTAACCCGCTACATGATTATTGTCAAAAAATTCTAATTGATCTTTAGAGATTTTGTAGATTCTTATGATCTGTTGT TCTCTGCCATTTGTTTTGCTATGAGTTTATCTTCTGCCACTGACTCACGCATTTCTCTAGTTATCACAAAGTATGTGTTA TCTCTAATCACTGAATTCGTTTGTTGAATGGTAGGTTATCCATTGCTTTAGTGATGCTGTTTCGCGGTGAGAATGGATAT GATCACTGCCATTGGTGTCACTACCTAACGTGTGTACCTACTTCTAAATGGAAATGCGATGACAGTTAAACAAAGGGCAT GAGCTATTCCTGTTTCTTCCATGTATAGGTATAGCTATAGCTTTTACATATTGGGTTGTTTACTTTATACTTTTCTCCTT TGTTAATTCGTTTAAAAATCAGTTTTTGTGGTTTGTATGTGGGTTTATGTGTATTCATGTGCACATTTATATATAAAGAA ATTTACTTTTGTACATGAAACCTGGCTTTCCTGTTGCCTAGTTCTTTCTGAGTTCAAATTCATCCCTTCCCTGTTATCTT TGTGATTATTAGGCTAGTCCATTTGAATGGTAGTTTGAATAAATTGATTAATTTCTTTTTATTCCTTCCCTGCAAACATA TGGAATTAACAAACATTGTTCAAAATCTAGAAAAGTATCTAATGGTGACATCAGAATTCATGGTTTGGACGGTTTACCAA ATCACTACGCGTTAGTCATTACTTAAACTTCACAGTCAATCTTTATAGTTGTTGTGTTGCTGTTAAGTCTCCAGTCTGAA CTAGACACCCATATTACAATGACATGATAACCAACTACACAATCGAACATATTTTCAGTCATTTTGGAGGATAGAAGAAT CAAATTTTTCCTTTTGCAGAACTAGTTTTAGTGACAGTTTTACTCTATTTTGCATCTGAAAACTTCGTTAAAAATGAAGG AAAATTAACTATACACGGGGCTGCGTCTAGGGTGGGTCACTTCAAAAGTGAACTACCGTGGTTTAGTTACATTTTTGTGG TGACAAGACAAAAATATCCTTCATGCCTCAAAACTTTCCCTCTTTCTCCTTCCATCATCACCACCCTATCACACCCATCT GAGTTCCTCACCCATCTGGGTTCCTCCTTCTATCATCACAAAGTTGACCTCTTCTCCTCCTCCACCCAATTCTCCTCCGC GTAAAACCCCACTTTCGTCTTTTTTCCTTTCAATCATTGCCTTACCGCCAGTGGTGACGCCGGAAGTGGGAGATCTCCGA GATCAGCTATCAGAAGAGGAAGTGGGAAATGGCCCAGGGTTCGAATTCCGGGTGGTTGATGCAATTGTCGCCGTCGATCT TGCAAATCCTGTCGTCGAGCTTCTCCTAGGTCGCCAGCTGGCCCATGCTTCCCATGATGGATCCGAGCTTCGACCTGTAA ATCTTAGCGTTGACGTCGAACATTTGGAAGACCTGCTCCAGCATCGCGGTTAGACGGGCTCTCGAACGCACCGACAACGA TGTGTATCTCGAAGGCGTTGTTGGTGGGACTCGGAGCACAAAATCTGAGAAGAGGGAACCCAAATCTGAAGAGACGTTGT GTGAATCCGAATTTATGTTTTTGTTCTGATGACCATGTAGCTGCATGTTCTGTGTCAAGAGAAAAAGGAGAAATGGTTTT AGTTCTTTCTCACTTCCTTGCTGTTTTTTTTTCCAGTTTTTCTGAGATGATGATTAATTGATTGTAGTTGCAGATTTGGG ATTTTCTTATTTCAATTCCCATTACACAACAACATCAATTTATCTATTTTAATCAAAATCAAAGACGTGTTGAGCTGTTC ACTTCCTTGCTGTTCTCTTTTTTTTTTTTTTTTTTATCATTCTCTTTCACCTGCTCCTTGTTTGAGACCCTCCTCTTATT AAAATCAAAGATTTGTTTGGTTTTCTGGATTTACTTTGAATTGAATTGTGAAATTCAGAGTATTGGAGTTTCTCTATTAG ACCATGTACAATGGTCTGTTGAAACTGATGTTGAATGTTGTTGAAACATGTTTAGCCCTTGCATTGGTCTGTTGAATGTT GTTGAAGTTGGGAAAATGTTGAAACCGTTCAACATTGTTGAGAGGAGCATCCGGAGCCACGTGGCAGCTCCGGATTGGAG AATGTCACACCCCGATTTCGGTGGCGTCACTTTAGTAACTCAAAATAAAA
CDS sequence (LotjaGi2g1v0147200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCACGGAGAGATCTAGAAGGTGGCAGAGGAAGCAAGAGAGCAGCATCAAATGCTTATGATCCAGAAACCCATTGGAC ATCATGGCTTGTGCCTCTGTTTGTGGCGGTCAATGTTGTTCTTTTCATTGCCGCCATGTATGTTAACAATTGTCCTCGTA AGAATCCTGGCTTTGATGGTGACTGTGTCGCCAGGTTCCTGGGTAGATTCTCCTTTCAGCCTCTCCGGGAGAATCCACTG TTTGGACCTTCTTCTGCGACGTTAACAAAGATGGGAGCTCTTAAGTGGGACGATGTTGTGAATCGTCACCAGGGATGGAG ACTTTTCACATGTATTTGGTTACATGCTGGAATTATTCATTTGGCAGCAAATATGTTGAGTCTGGTTTTCATTGGCATTC GCCTTGAACAACAATTTGGGTTTGTGAGGATAGGAATCATTTACCTGTTGTCCGGATTCGGTGGGAGTGTATTGTCATCT CTATTTATTAGAAACAACATCTCCGTTGGTGCTTCTAGTGCTTTGTTTGGACTTCTTGGAGCAATGCTCTCAGAACTTAT CACAAACTGGAGTATTTACTCCAATAAAGCAGCTGCTTTGCTCACACTAGTCCTTATTATTGCTGTCAATCTTGCCATTG GCATGTTGCCACATGTTGATAATTTTGCTCATATAGGAGGATTCCTAGCAGGATTTCTTCTTGGTTTTATTTTCCTACCC CGTCCTCAATTCGGGTGGTCAGAGCAGCAACATCTTCCTACTGGTGTTCGTGTAAAATCAAAGTACAAGGCTTACCAATA TGTTCTATGGATTGTCTCTGCTGTTCTATTCATCGCTGGGTTATCCATTGCTTTAGTGATGCTGTTTCGCGGTGAGAATG GATATGATCACTGCCATTGGTGTCACTACCTAACGTGTGTACCTACTTCTAAATGGAAATGCGATGACAGTTAA
Protein sequence (LotjaGi2g1v0147200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSRRDLEGGRGSKRAASNAYDPETHWTSWLVPLFVAVNVVLFIAAMYVNNCPRKNPGFDGDCVARFLGRFSFQPLRENPL FGPSSATLTKMGALKWDDVVNRHQGWRLFTCIWLHAGIIHLAANMLSLVFIGIRLEQQFGFVRIGIIYLLSGFGGSVLSS LFIRNNISVGASSALFGLLGAMLSELITNWSIYSNKAAALLTLVLIIAVNLAIGMLPHVDNFAHIGGFLAGFLLGFIFLP RPQFGWSEQQHLPTGVRVKSKYKAYQYVLWIVSAVLFIAGLSIALVMLFRGENGYDHCHWCHYLTCVPTSKWKCDDS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 28 | 28 | - | – | |
| PANTHER | 15 | 317 | 303 | 3.2E-195 | ||
| PANTHER | 15 | 317 | 303 | 3.2E-195 | – | |
| TMHMM | 26 | 48 | 23 | - | – | |
| SUPERFAMILY | 26 | 243 | 218 | 3.27E-43 | – | |
| Phobius | 29 | 48 | 20 | - | – | |
| Phobius | 49 | 111 | 63 | - | – | |
| Gene3D | 75 | 243 | 169 | 2.6E-36 | ||
| Pfam | 100 | 242 | 143 | 2.8E-41 | ||
| TMHMM | 112 | 134 | 23 | - | – | |
| Phobius | 112 | 133 | 22 | - | – | |
| Phobius | 134 | 144 | 11 | - | – | |
| TMHMM | 141 | 163 | 23 | - | – | |
| Phobius | 145 | 163 | 19 | - | – | |
| Phobius | 164 | 168 | 5 | - | – | |
| TMHMM | 168 | 190 | 23 | - | – | |
| Phobius | 169 | 190 | 22 | - | – | |
| Phobius | 191 | 196 | 6 | - | – | |
| Phobius | 197 | 216 | 20 | - | – | |
| TMHMM | 197 | 219 | 23 | - | – | |
| Phobius | 217 | 221 | 5 | - | – | |
| Phobius | 222 | 239 | 18 | - | – | |
| TMHMM | 223 | 240 | 18 | - | – | |
| Phobius | 240 | 266 | 27 | - | – | |
| TMHMM | 267 | 289 | 23 | - | – | |
| Phobius | 267 | 289 | 23 | - | – | |
| Phobius | 290 | 317 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Serine-type endopeptidase activity | Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). | ||
| Biological process | Proteolysis | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi2g1v0147200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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