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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0150500 |
| Transcript ID | LotjaGi2g1v0150500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT1G12700.1 RNA processing FACTOR; Swiss-Prot: sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial; TrEMBL-Plants: tr|A0A0R0IGR1|A0A0R0IGR1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0150500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:54151651..54158371) extracted from Lotus japonicus Gifu genome v1.2.
ATAACATAGACAAAATTGTAACCTTCTTGTCAATTATTCCATCACAAATCAGCTCCCATTCTCACGAAATTGCAAAGGAT ATCAGTTCCCATTGTTAAAGGGTTTGAAAGCGCAAAGGATATCAGTTCCAGTTCCATTCCTACAATAGTACAATACACAA TGTTGTCATGGTTGAGATTAAAGAGGTTTCCCTTTCTTTCAAACCCCAATTTTTTTCTTCACTCTCACTTTCATTCTGTT ACTCATTCCTTTCACAATGTTGATGATGCTGTCTCCTTCTTCAACCGCATGCTCCAAATGCGGATTACCCCACCCATCAT CGAATTCAACAAGGTTTTAACTTCACTTGTTAAGACGAAGCATTACTCCACCGCTATATCGCTTTCTCGCCAAATGGAGA TCACTGGAATTACGCCCAACTTTGTCACTCTCAACATCCTCATCAATTGCCACTGCTACCTAGGTCAAACCACTTCCGCA TTTTCTGTATTGGCCAACATTCTCAAGAGGGGTTACCACCCAGATACCATCACCTTCAATACTCTCATCAAAGGTCTCTG TCTTCACGGCAAGCTCCACAGAGCGCTCCAATTTCATGATGACGTGCTGGCCCAGGGGTTTCAGTTGGATCAAGTCACTT ACGCGACCTTGATCAATGGCCTATGTAAAATGGGGCAAACAGAAGCTGCTTTGGAGTTGCTTAGGCGGATTGAAGGGCGA GGGATTAAACCTACTGTTGTAATGTACAACACCATCATCGATAGCCTGTGTAAAGTTAAACTTGTAAGTCATGCTTTTGA TTTATATTCTGAAATGATTGCCAAGGGAATATCTCCTAATGTTGTCACTTACAGTGCTTTAATATATGGCTTTTGCATTG TTGGTCAATTGAAACAAGCAATTGGGTTGCTAGATGAAATGGTATTGAAAAACATAGACCCAGATGTTGTTACGTATAAT ATATTGGTCGATGCTTTAGGTAAGGAAGGGAAGGTGAGAGAAGCTAAGAACATGTTAGCTGTGATGATTAAACAAGGTGT GAAACCTGATGTTGTTACTTATAGTTCCTTGATGGATGGGTATTGCCTAGTTAATGAAGTGAATAAAGCCCGGGATGTAT TCAATGCTATGGCTCGGAGGGGAGTGACTCCTAATGTTCAGAGCTACAATATTATGATTTATGGATTGTGTAAGATTAAA ATGGTGGACGAAGCCTTGAATCTCCTTGAAGAAATGGATTACGAAAAGATTATTCCTAATAAAGTAACCTACAGTTCTCT TATTGATGGTTTATGCAAAACAGGGAAAGTCTTTAATGCATGGGAGCTTCTTGATGAGATGCATGTTAGAGGTCAACCAG CCGACATAATCACCTATAATTCTTTCTTGGATGCTTTATGCAAAGGTCATCATGTTGATAAGGGAATTGCTTTAATCAAG AAAATTATAGACAAGGGTATTCAGCCAGATATGTGCACATACAATATACTTCTGGATGGACTATGCAAATGTGGTAGAAT TAAGGATGCACAAGAGGTTTTTCAGGATCTTTTTAAAAAAGGCTATAATTTGAATAACTGGACATATAATACTATGATCA ATGGACTTTGTAAAGAGGGCTTGTTTGATGAAGCATTGACATTGATGTCGAAAATGGAAGACAATGGTTGCATCCATGAT CCAATAACTTTTGAAACAATTATTTCTGCTCTTTTTGAAAAAGGTGAAAATGATAAGGCAGAGAAGCTTCTTCGTGAAAT GATTGCTAGAGATCTATTGTGAAGGTAAAATTAGGTAAGAGGCTTTCTAATTACATGTTAAGTTACTTTTAATATTGATG AGGGCCATCTATTTCTTATTCTTCTAATAGTTACACATAAAAAAGAAGACGAACTAAGCTTTTATTGAATTCAACCAACG AGAACAAGTACTGATATTTTCTTAAAGCTTATCTGTGCTCTTTTAAAAAAAAAAACACTGTAAGGCAAAACAACTTTTCA TCAAATGGTTGCTATAGGCTTACTGAAAGGATAAAAGAAGATGAAACATCTCAGTGCAATATCAAATTACATTAATGTTA CGGTTGAATTTCTCTGATTGGTTTGTAATTTTTTCATTTATTGATGTTTTACCTTAAAGCTGTTCTGCTGATATTTTGGC TGTCTCATATTTTTTAAATTAATTGTCATTGTTGTTGGTTGAATTGTGAGACTTAACATGGCTGTCATCCTTCTCCCCTT GGTAGATTCAATATGCTTTGTTGACTCTTATGAGGATCTTTCCCTTTCTTGCTCGGTAGTAACTTTGGTTTTGAATTCTT GATTGGTGTCATATATGATGATATATTGTCTCTTTTTCCATGAAAGAAGCCCAACAATAACTGAATAGATTGTTTCAATT AATTTTATTCCCAGCTTTAATGATTCATTCTGAAGTTTCCATTCTACAATCAAAACAGATTCACTTGCTAAAGTTCCCTC TTTTTTCCTTTCCTCTTCAAGTTTCTTTTTTTATTCACGAAAATCACAGCCTTAATAGCAATATATTAAGATAGCCATCT AACTTCTTACACATTGAGTCATATTATGTTATTCAGGTTATGTATTCCTAGCAAAAGAAATTATTCTAAATAAACTGTGG TATAAATGCTAATGCTTTTTTTTATATCACTTTATATTTTTCTTAACTAAATAGTGTTCGAATCAATTTCTGCAAGATCG GCTAACACTTTCAATTTGCTCTCACTAATTAATGTTTTCATAGTTGCATCCTTCTCATTGTAAACTTTTGAAATTTCACT TGATGAAATCAGTAAGTTATTAAATCAATGGAAAGTTCTTTCGAGACAGCTTTTCCATTTAAGCTTAGATCTGTTTTCTT GATACTTCTTTTACACAATCTGACATAGAGATTACTATGCTATATCTGAATAAAATGACGGGAAACCCGTCATTATTCAA ACCTAGTTGGGAGATTTGGTGTCTGTTACTTGCAACCATTGTCTTTTAAGTTGTGGTGTTTCTCTAGTTCCAATTTTAGA TTTCTAGATTACAAGATCTTTCATCATTAATTTTTAATTTATTTTCTGCTATTTTATGGCTCTAGGTGTGTTTAAACTTC AAAAGGTAAAAGGTGAAGCAACTTCATTTCTCCCTTGAAATTACATTTGAATTTTCAAGCAATGGAGTAAGGGTCATCAT TTGGGTAGTTTAAGCTGATTGTTACCAGCCGGAAGAAAAGGCACTCATCTGGTACTTTTCTTTCACTTTTTTGCATCTGT TTCTTTTTTTTTTCTTTTCCTTTTTTGTAATTTCCCCTTGGAACATGACCTTTGTTCTCTAAATTATCATATCATTACTA TATTAATTTCAACTCCTAATTTCCTATGATTTTCCTTCATGTGGAATCTTCTACAACTACATGGCAAGGCATGAAATTTT TCTATGAATTCTTTGTCAGATTCCTAGGTTATTTTTTAAAAATTAGAAAGGGCCAATTTACTCATGTTTCTACCATATTT TTCATTATCCTTCTTATAATGTATTCTCAAGAGCTGCGGTTGAGTGTTGACTCATGCTTACTGATAACACATGTGGTATC TTCACTGGTGTTAGGAAAAATTCGGATATATTTCATTACACAGCTTTAGTACGAGCGTAGCTGTTGATTGTTTGTTTAGA TTGAGTTTTTTATTAATCTTATCTCATTGAAATAGAGATAAGGTTTAGATATAGTTTCTCTATTTTAGATTAGTATCTAG TTTCTTTATTTTAGATTAGTATCTATTAAGATAGAGGGTTAGATAGATTTGTTTTTTATCTCTTTATTATGTCTATAAAT TGTACAATTATGTTGATGAAATAGTAAGAGAAATATTTTATCAGATTCAAGTGTAGCATTAGAGAAGAAGTGGTAGAATT AGAGAAAGGAAATTAGGGAGCTTCTGTTACATTGTTACTCTCTTTAATCTTTTTTTCTTTCTTGTATATCAATTTCTCTC TTTAACTAGTGTTATAAAAATAGCAATTGTAGCTGTTATGACCTGACCACTAATTATACTAATTTAGTGGATGGTTCAAG TTTCAGATTTGTGAGGGTACAATGAGGGAAAGTGTTTTAGAGAAAATGAGAGATATATGAATATATTTAAAGGGTAAAGT ACAAAAGTATCTCTGATTTAGCAGAGTTTTGATACCTATAGGAGACTTAAGAAGAGAGTTAACTGATCTGTTCTAATAGA TAACAGAATCTTGCAACCTGATTCCATGAGATGAAACTATACATGGCATTGGATATGCACTAATATCAAGAAGACAGCAT TTTTCTGGAGTTGTTTATGCATTAAAGAAACTCAGAAGCATAAACATTGAAAGACTATTTGAATATTGTACTAAATCGTA ACATAAGAAATTATGTTAATATTAGTAATTAACCTGCATTGTAGGTATTGTTGTTTGTGTAGATATTTATCGTTCTTGTT TTACTGAACCTATTGAAGTTTTTCTCTAATTTGCTTGAACTGCTTTACTCTTCGCTTCTTAATTGCCAGGAACAGTCTAA GCAATGCGATTAATGTGATTGACACTCTCATAGGTATTAGATATTAAACCAATACAGAGGAACCTTACCTGATTGATTGT GTCAAAAATAATAAAAGCAAAATATTCAAATGATCTTGCTTCTCATGCAGCTGATGTAAACTATGCTGTGAAGTAGGCTG AAGTTGAAATAACACCAAACCCTGTTGTGCTTGCTGCTAGTTTACTACTGGTACTCTCTTTTTTCTTTATGGTTATTTTA TCATGGTGGTTTCCCAATTCCCATCTTTCCTTCATGTAGGAGCCAGGCTAGTAGTCTAGTTTGGTGAAGGAAATTGTTGT CTATGTTTGATGTGGTAGTTAAAGTTATTTTTGAAAGTAATTGCAGATACACTCACTTATATTTCGGCCAAATAATATTT ATTCAGTCTTTTAAAAATCTTTCATGTTTCGAGAGCCAGTCTCTCCCTAAGAACCAATTTCCACAAACATTGGTGTTCAA GAGCCAGTCACTCCCTAAACCCTAACAGCAATAAACTGCTCCTAATAGAAATAAACTGACTATTAACTGATAAAATTACT TAATAACTGCTCTAACTACCCTTGTTCCAGAAACTGGTGGGTCTCTCCCTATCATTACCCCTCCCTAAACGATTCACCTT GTCCTCAAGGTGGGAAGTAGGAAATGCTCCTTGAATGTAGGTTGGCTGCTCCAAATGTTCTGCAATTTTAACCAGCACCT CCTGGATCCCACTGTTTGAAGTTTGCCGAACCACTTAACGCAGTCCTTTTCATTCCTGTCTTCCTCTCTTTCTACAAGAT CATCCCATTCCTCTGTCTTGGCTGCCCTTCTTTATTCAGTGGCCGACGTCTCTTCATTGTCTTTGGTTGTCGATGGATCT TCCGATGCTTTCCTCACTGGGGTCCTAGACAAACCCCATCACCTCTTCTTACAACCTCTGCTTCAAGATTGGGTCTTTGC ATCTCAAAGGTTAAGCATTTCTCCGCCTCTACTGTGGACTCTGTCATCTCTGCTTTTGATTCTACTCGATGGCCTTCTCT TGTATTCTCCAAGACTTCATTTTTCTTTGGGCTTTCTTCCTCTCCAGAATCATCAACATATACTGGTATGTCAGGATCCA TTTCTGGTTGGAATCTCTTCAGTAAAGCCTTCACAAAATCCCACCATTTTACATTCTGGTTGCTTCTTTTCCAGAAATAC CACCAGAAGAAAGCATCCCGTCAAAACCATCTCAGCCTCCGAGAACTTCTCTTCACAGTGCTGCTCCACTTTGATCAACC ACCAGTAAGCCTCTTTACCATCAAAGGTTGGAATTGTCTTACCTTCCCTCTTGTGACTTGCTGTCTCATTCTCCATTTCT TCACGATTCAATTGCACCACAGCACCAGGATGGTAATCTGATACCAAATTGATAGGAATAGAATTATATTATAGAATAGT TATACAAACACTGGTGTCGAGAGCCCGTCTCTCCCTAAGAACCAATTTCCTCAAATTCTGAATGATCACCCAACTGATTG GAACTCCCTATTTATAACTTCCTAACAGCAACAAACTGCTCCAAACAACAATAAACTGCTCCTAAATCCTAAAAGAAATA AACTGACTAATAACTGATAAAATTACTTAATAACTGCTATAACTACCCTTGTTCCAGAATCTTGCCCGTTCGCATCGGTG GTGTGCGAGTAGTGTTAGAAATGGCTGGGATACTCAACTGTTCTTCCTGATGATTGTAGACTGCATCTTTTACCATACCT TGGTTGTTCCAATGAGAAACAGAGAAAATGTTGCTGGTGGATTATTTGGTAATGCAGTGGTCTGGTCTATTTGGATAGAT AGTCACTCTATTGTGTTTAGGGAAGGAAATGTAGATGTGGATAGAGTAGGATGTAGGGTTTTCATTGTTCATTCCTTGAG TGGATTTTGAACTTAGCTCAGTGCTTGAAAATATTGTAACCTGTTTGCCCCCAAGTTGTGCAGCTAGTGTTGTTCGCTAT TTTGATTAAGTTGCTCAGTGCATTGTAACTTCTTAGAGTTTTATTAATCAGTAATGGTAATTGTTATGAAATTCCAAAAA AAGAAATGTAAGAATGCAAATGTCACCATCCGATTTTTTCAATTGAAATTCTTGGATTTCGACTCACCATGTTACGTACT G
CDS sequence (LotjaGi2g1v0150500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGTCATGGTTGAGATTAAAGAGGTTTCCCTTTCTTTCAAACCCCAATTTTTTTCTTCACTCTCACTTTCATTCTGT TACTCATTCCTTTCACAATGTTGATGATGCTGTCTCCTTCTTCAACCGCATGCTCCAAATGCGGATTACCCCACCCATCA TCGAATTCAACAAGGTTTTAACTTCACTTGTTAAGACGAAGCATTACTCCACCGCTATATCGCTTTCTCGCCAAATGGAG ATCACTGGAATTACGCCCAACTTTGTCACTCTCAACATCCTCATCAATTGCCACTGCTACCTAGGTCAAACCACTTCCGC ATTTTCTGTATTGGCCAACATTCTCAAGAGGGGTTACCACCCAGATACCATCACCTTCAATACTCTCATCAAAGGTCTCT GTCTTCACGGCAAGCTCCACAGAGCGCTCCAATTTCATGATGACGTGCTGGCCCAGGGGTTTCAGTTGGATCAAGTCACT TACGCGACCTTGATCAATGGCCTATGTAAAATGGGGCAAACAGAAGCTGCTTTGGAGTTGCTTAGGCGGATTGAAGGGCG AGGGATTAAACCTACTGTTGTAATGTACAACACCATCATCGATAGCCTGTGTAAAGTTAAACTTGTAAGTCATGCTTTTG ATTTATATTCTGAAATGATTGCCAAGGGAATATCTCCTAATGTTGTCACTTACAGTGCTTTAATATATGGCTTTTGCATT GTTGGTCAATTGAAACAAGCAATTGGGTTGCTAGATGAAATGGTATTGAAAAACATAGACCCAGATGTTGTTACGTATAA TATATTGGTCGATGCTTTAGGTAAGGAAGGGAAGGTGAGAGAAGCTAAGAACATGTTAGCTGTGATGATTAAACAAGGTG TGAAACCTGATGTTGTTACTTATAGTTCCTTGATGGATGGGTATTGCCTAGTTAATGAAGTGAATAAAGCCCGGGATGTA TTCAATGCTATGGCTCGGAGGGGAGTGACTCCTAATGTTCAGAGCTACAATATTATGATTTATGGATTGTGTAAGATTAA AATGGTGGACGAAGCCTTGAATCTCCTTGAAGAAATGGATTACGAAAAGATTATTCCTAATAAAGTAACCTACAGTTCTC TTATTGATGGTTTATGCAAAACAGGGAAAGTCTTTAATGCATGGGAGCTTCTTGATGAGATGCATGTTAGAGGTCAACCA GCCGACATAATCACCTATAATTCTTTCTTGGATGCTTTATGCAAAGGTCATCATGTTGATAAGGGAATTGCTTTAATCAA GAAAATTATAGACAAGGGTATTCAGCCAGATATGTGCACATACAATATACTTCTGGATGGACTATGCAAATGTGGTAGAA TTAAGGATGCACAAGAGGTTTTTCAGGATCTTTTTAAAAAAGGCTATAATTTGAATAACTGGACATATAATACTATGATC AATGGACTTTGTAAAGAGGGCTTGTTTGATGAAGCATTGACATTGATGTCGAAAATGGAAGACAATGGTTGCATCCATGA TCCAATAACTTTTGAAACAATTATTTCTGCTCTTTTTGAAAAAGGTGAAAATGATAAGGCAGAGAAGCTTCTTCGTGAAA TGATTGCTAGAGATCTATTGTGA
Protein sequence (LotjaGi2g1v0150500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLSWLRLKRFPFLSNPNFFLHSHFHSVTHSFHNVDDAVSFFNRMLQMRITPPIIEFNKVLTSLVKTKHYSTAISLSRQME ITGITPNFVTLNILINCHCYLGQTTSAFSVLANILKRGYHPDTITFNTLIKGLCLHGKLHRALQFHDDVLAQGFQLDQVT YATLINGLCKMGQTEAALELLRRIEGRGIKPTVVMYNTIIDSLCKVKLVSHAFDLYSEMIAKGISPNVVTYSALIYGFCI VGQLKQAIGLLDEMVLKNIDPDVVTYNILVDALGKEGKVREAKNMLAVMIKQGVKPDVVTYSSLMDGYCLVNEVNKARDV FNAMARRGVTPNVQSYNIMIYGLCKIKMVDEALNLLEEMDYEKIIPNKVTYSSLIDGLCKTGKVFNAWELLDEMHVRGQP ADIITYNSFLDALCKGHHVDKGIALIKKIIDKGIQPDMCTYNILLDGLCKCGRIKDAQEVFQDLFKKGYNLNNWTYNTMI NGLCKEGLFDEALTLMSKMEDNGCIHDPITFETIISALFEKGENDKAEKLLREMIARDLL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 17 | 51 | 35 | 5.689 | ||
| Gene3D | 29 | 185 | 157 | 3.1E-38 | ||
| PANTHER | 34 | 180 | 147 | 1.4E-230 | – | |
| ProSiteProfiles | 52 | 86 | 35 | 7.673 | ||
| ProSiteProfiles | 87 | 121 | 35 | 9.536 | ||
| Pfam | 89 | 118 | 30 | 0.059 | ||
| TIGRFAM | 89 | 123 | 35 | 6.5E-5 | ||
| PANTHER | 121 | 257 | 137 | 1.4E-230 | – | |
| Pfam | 121 | 170 | 50 | 1.8E-12 | ||
| ProSiteProfiles | 122 | 156 | 35 | 11.038 | ||
| TIGRFAM | 124 | 157 | 34 | 8.7E-6 | ||
| ProSiteProfiles | 157 | 191 | 35 | 13.187 | ||
| TIGRFAM | 159 | 193 | 35 | 4.0E-9 | ||
| PANTHER | 178 | 395 | 218 | 1.4E-230 | – | |
| Gene3D | 186 | 255 | 70 | 7.0E-23 | ||
| Pfam | 191 | 239 | 49 | 1.0E-17 | ||
| SUPERFAMILY | 192 | 495 | 304 | 6.07E-6 | ||
| ProSiteProfiles | 192 | 226 | 35 | 11.992 | ||
| TIGRFAM | 194 | 228 | 35 | 2.8E-10 | ||
| ProSiteProfiles | 227 | 261 | 35 | 11.455 | ||
| TIGRFAM | 229 | 263 | 35 | 2.3E-6 | ||
| PANTHER | 251 | 467 | 217 | 1.4E-230 | – | |
| Gene3D | 256 | 325 | 70 | 2.6E-22 | ||
| Pfam | 261 | 309 | 49 | 2.6E-16 | ||
| ProSiteProfiles | 262 | 296 | 35 | 12.956 | ||
| TIGRFAM | 264 | 298 | 35 | 6.5E-9 | ||
| ProSiteProfiles | 297 | 331 | 35 | 12.627 | ||
| TIGRFAM | 299 | 333 | 35 | 9.9E-9 | ||
| Gene3D | 326 | 397 | 72 | 3.0E-23 | ||
| Pfam | 331 | 380 | 50 | 1.8E-16 | ||
| ProSiteProfiles | 332 | 366 | 35 | 11.838 | ||
| TIGRFAM | 335 | 367 | 33 | 2.3E-7 | ||
| PANTHER | 356 | 536 | 181 | 1.4E-230 | – | |
| ProSiteProfiles | 367 | 401 | 35 | 11.641 | ||
| TIGRFAM | 369 | 398 | 30 | 9.3E-8 | ||
| Gene3D | 398 | 465 | 68 | 1.3E-18 | ||
| ProSiteProfiles | 402 | 436 | 35 | 11.488 | ||
| TIGRFAM | 404 | 437 | 34 | 1.3E-6 | ||
| Pfam | 404 | 434 | 31 | 0.0021 | ||
| Pfam | 436 | 485 | 50 | 5.0E-16 | ||
| ProSiteProfiles | 437 | 471 | 35 | 12.288 | ||
| TIGRFAM | 439 | 472 | 34 | 2.7E-6 | ||
| Gene3D | 466 | 537 | 72 | 7.6E-19 | ||
| ProSiteProfiles | 472 | 506 | 35 | 12.715 | ||
| TIGRFAM | 475 | 506 | 32 | 8.9E-11 | ||
| Pfam | 502 | 534 | 33 | 6.1E-7 | ||
| ProSiteProfiles | 507 | 540 | 34 | 9.964 | ||
| TIGRFAM | 509 | 539 | 31 | 0.002 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0150500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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