Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi2g1v0196800 |
Transcript ID | LotjaGi2g1v0196800.2 |
Related isoforms 3 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Auxin efflux carrier component; TAIR: AT2G01420.1 Auxin efflux carrier family protein; Swiss-Prot: sp|Q67UL3|PIN1C_ORYSJ Probable auxin efflux carrier component 1c; TrEMBL-Plants: tr|A0A165XG59|A0A165XG59_DAUCA Auxin efflux carrier component; Found in the gene: LotjaGi2g1v0196800 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:63161541..63163310) extracted from Lotus japonicus Gifu genome v1.2.
ATGCCTGCCATCATAGCAAAGTCTATTTCAATTCTGTCAGATGCAGGGCTTGGCATGGCCATGTTCAGTCTTGGTCAGTT CACTCCACTCCTTGTTATCTTACAAAATATTTTCAGTCAGAAACAAAAGAAATTAGTAATTATACTTTAACATAAAAATA ATGCAAACACATAATAAATACCTCATTTTCACATTGAATGTTGTATGTTTTCATTGTATTGTGTTCATGTTTAAATTCTA AAAGAAATTAAACTTGTTCTGACATTTTTCTTTGCTTGAAAAACAGAAATCTTTTCAAATTCCATGCTAACATTGATTAA TTGCTATTATTAAATTAAATGCTTTGTTTGACAAAGCAAGCAAGAAACAGGCAGAAAAGCAAACAGTATAATGTTGTGAT AATAATGTGGGGGGTTACTTTATCCATCTTTTTATGATAACTTTTTGCCAAGTTTGGTGTTGGTGGTGGGGGTGATGATG AAAGGTCTTTCACAATGGTGGTGGTGATAGTACTGATGATGAGCATGCTTGTTTGCTGCCCTCTTTTTTTTTTGGATGTG AATGACAGGTCTGTTCATGGCTTTGCAACCGAGGATCATAGCATGTGGGAATTCCATTGCAACTTTTGCCATGGCTGTGA GATTCCTTACAGGTCCAGCTGTCATGGCAGCTGCTTCCATTGCTGTTGGACTCAAAGGAACACTCTTACACGTTGCTATT GTTCAGGTTTGTACATTTCTTTATTTCTCTCTCTTCTGCTCCCTTACTCACAAAGCCAATACAATATTCATTGCATAGGC TCCAAAAAATTCTATACTTTAATTATCTAATCAAATTGCTATACATATGTCTAGCTCTGCCAAGATAAGCTATTATATTG CTATCTACCTTTTGTTTAAAAAAACCAAAGCCATTTTATTGTTCTGATTGAATTCCAATTGGTTGAAATTTAGTGTATCT TTGTAAATTCTTCTAGGAGGGTGTTTGGATTAGCAAAATTAATTAATTTTGTCACTTAGAAACTACTTATAATCATTTTA TTTAAATTAATTTTAGAAGATTTTTCAAACATACACTTATTCTAAAGTTAAAATCAATTATGAGAAAAAAAAATTGGGTA TCAAAATTGATTATGAAAAAATAGAAGCTTATGAAGACAAACTATTACTTGTACAACAACATGCCTCATTCTTGTCAAAA TGTTTGAAATTCTATGCCAATAACATTAATTGGCTATGGAAGTTGGAACTCCAATAGAATGTCATGACTCATTTGAAAAG AAAATGTAAAGAGAAATGAATATCCTATAGCATATATTTGTACCACTTTATTCTTCCTCAGAATCAATTCTGCACTAAGA AGCTACTCACATGAGCTTGTCTTTTAACTTTATCAATTGTAAAAAGTGTACCAAACATGCTATTAATATTGAGAGTTGAT CTCTTTGTGTGTTTGTGGATGTACAAGAAAGAATTAAAACCGTAGTTGACATGTTTGTTTGCTTGTCCTGTTATTGCCAA AAAAACCACAGGCAGCTCTACCCCAAGGAATTGTTCCATTTGTCTTTGCCAAGGAATATAATGTACATCCTGATATTCTC AGCACAGCGTAAGTATATAATATAGTTCCACTTTTCTTTTTCCCTTCATTCAATCTCTTCTCTTTTAATGCCAACCAATG AAACCTCCTTTTGCTGGTTGCAGTGTCATTTTTGGGATGCTCATTGCTTTGCCCATTACTCTAGTGTACTACATCTTGTT GGGGTTATGA
CDS sequence (LotjaGi2g1v0196800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCTGCCATCATAGCAAAGTCTATTTCAATTCTGTCAGATGCAGGGCTTGGCATGGCCATGTTCAGTCTTGGTCTGTT CATGGCTTTGCAACCGAGGATCATAGCATGTGGGAATTCCATTGCAACTTTTGCCATGGCTGTGAGATTCCTTACAGGTC CAGCTGTCATGGCAGCTGCTTCCATTGCTGTTGGACTCAAAGGAACACTCTTACACGTTGCTATTGTTCAGGCAGCTCTA CCCCAAGGAATTGTTCCATTTGTCTTTGCCAAGGAATATAATGTACATCCTGATATTCTCAGCACAGCTGTCATTTTTGG GATGCTCATTGCTTTGCCCATTACTCTAGTGTACTACATCTTGTTGGGGTTATGA
Protein sequence (LotjaGi2g1v0196800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPAIIAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIATFAMAVRFLTGPAVMAAASIAVGLKGTLLHVAIVQAAL PQGIVPFVFAKEYNVHPDILSTAVIFGMLIALPITLVYYILLGL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 124 | 124 | 1.1E-74 | – | |
Phobius | 1 | 5 | 5 | - | – | |
Pfam | 1 | 119 | 119 | 4.5E-55 | ||
PANTHER | 1 | 124 | 124 | 1.1E-74 | – | |
Phobius | 6 | 29 | 24 | - | – | |
TMHMM | 9 | 31 | 23 | - | – | |
Phobius | 30 | 40 | 11 | - | – | |
Phobius | 41 | 64 | 24 | - | – | |
TMHMM | 41 | 63 | 23 | - | – | |
Phobius | 65 | 69 | 5 | - | – | |
TMHMM | 68 | 90 | 23 | - | – | |
Phobius | 70 | 90 | 21 | - | – | |
Phobius | 91 | 101 | 11 | - | – | |
TMHMM | 100 | 122 | 23 | - | – | |
Phobius | 102 | 121 | 20 | - | – | |
Phobius | 122 | 124 | 3 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi2g1v0196800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…