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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0196800 |
| Transcript ID | LotjaGi2g1v0196800.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Auxin efflux carrier component; TAIR: AT1G73590.1 Auxin efflux carrier family protein; Swiss-Prot: sp|Q9C6B8|PINI_ARATH Auxin efflux carrier component 1; TrEMBL-Plants: tr|C6ZJZ4|C6ZJZ4_SOYBN Auxin efflux carrier protein 1; Found in the gene: LotjaGi2g1v0196800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:63162457..63164924) extracted from Lotus japonicus Gifu genome v1.2.
ATGGTGCCACTCTATGTGGCCATGATCTTAGCCTATGGCTCAGTGAAATGGTGGAAAATCTTTTCCCCTGACCAATGCTC TGGCATCAACCGTTTTGTTGCTCTGTTTGCAGTTCCACTCCTTTCTTTCCACTTCATAGCCTCCAACAACCCTTACAAGA TGAACATTCGATTCCTAGCTGCTGATACCCTTCAAAAGATCATAATCTTGATCATTCTAGCAATATGGAGCAACGTCTCC AAAAAGGGTTGTTTGGAATGGACCATTACTCTGTTTTCCCTTTCCACACTCCCAAACACTCTGGTTATGGGTATCCCTCT GCTCAAAGGGATGTATGGTGAGTTCTCAGGGAGTTTAATGGTGCAGATTGTGGTCCTTCAGTGCATCATTTGGTACACTT TGATGCTCTTCATGTTTGAGTTCAGAGGAGCTAGAATGTTAATCTCTGAGCAGTTTCCTGACACTGCTGCTTCCATTGTC TCCATCCATGTTGATTCTGATGTCATGTCACTGGATGGAAGACAAGTTTTGGAGACTGAAGCTGAGATTAAAGAAGATGG GAAGCTTCATGTGACTGTGAGGAAATCCAATGCTTCAAGATCAGATATTTTCTCAAGAAGGTCTCATGGTCTTTCTTCCA CAACTCCTCGCCCTTCAAATCTCACCAATGCTGAGATATACTCTTTGCAATCCTCTAGAAACCCAACACCAAGAGGTTCC AGTTTCAACCATACAGATTTTTACTCCATGATGGCTGGTGGGAGAAACTCCAACTTTGGTGCCAATGATGTTTATGGTCT CTCAGCTTCAAGAGGACCAACTCCAAGGCCTTCTAACTATGATGAAGATGGTTCTGCTGCTGCTGCTGCTGGTGCAAATA AGCCAAAGTTTCATCATGGTTCTGGTGGTGGAACTGGTCACTACCCTGCACCAAACCCAGGAATGTTCTCTCCCAAAACT GTTGCTGCTAATGCTAACTCCAAGAGGCCTAATGGTCAAGCTCAGCAGAAACCAGAAGATGGGAAGGATCTTCACATGTT TGTTTGGAGTTCAAGTGCTTCACCAGTTTCTGATGTGTTTGGTGGGCATGAATTTGGTGCTCATGATCAGAAAGAAGTCA AATTGAATGTTTCTCCAGGAAAAGGTGAATTTTTGGTTGTTTTCTTTTCTTCATATCATTCATTGTATTTTCTTTTATTC TCATGTGGGTATTTGGTTGTATTTTATATTTTCAGTGGAGGGTCACAGAGACACTCAAGAGGACTACCTAGAGAAAGATG AGTTCAGCTTTGGAAACAGGGGAGTAGACAGGGAAATGAATCAGCTTGAAGGTGAGAAAGTTGGAGATGGGAAGTCTAAA ACAATGCCACCAGCAAGTGTCATGACAAGGCTTATATTGATCATGGTGTGGAGAAAGCTTATCAGAAACCCCAACACCTA CTCTAGTCTAATTGGCCTCATTTGGTCTCTTGTTTCTTTCAGGCATGTCAAAATCTCTGCATAATCTTGTACATTTTCAT GTGTACTAATTACAATCCCTTGTTGTTTCCATTTTGATTGATTATGGTAGGTTTCTGGTGTTGTTGTTTTGTTCCTTGCA GGTGGAACATTGAGATGCCTGCCATCATAGCAAAGTCTATTTCAATTCTGTCAGATGCAGGGCTTGGCATGGCCATGTTC AGTCTTGGTCAGTTCACTCCACTCCTTGTTATCTTACAAAATATTTTCAGTCAGAAACAAAAGAAATTAGTAATTATACT TTAACATAAAAATAATGCAAACACATAATAAATACCTCATTTTCACATTGAATGTTGTATGTTTTCATTGTATTGTGTTC ATGTTTAAATTCTAAAAGAAATTAAACTTGTTCTGACATTTTTCTTTGCTTGAAAAACAGAAATCTTTTCAAATTCCATG CTAACATTGATTAATTGCTATTATTAAATTAAATGCTTTGTTTGACAAAGCAAGCAAGAAACAGGCAGAAAAGCAAACAG TATAATGTTGTGATAATAATGTGGGGGGTTACTTTATCCATCTTTTTATGATAACTTTTTGCCAAGTTTGGTGTTGGTGG TGGGGGTGATGATGAAAGGTCTTTCACAATGGTGGTGGTGATAGTACTGATGATGAGCATGCTTGTTTGCTGCCCTCTTT TTTTTTTGGATGTGAATGACAGGTCTGTTCATGGCTTTGCAACCGAGGATCATAGCATGTGGGAATTCCATTGCAACTTT TGCCATGGCTGTGAGATTCCTTACAGGTCCAGCTGTCATGGCAGCTGCTTCCATTGCTGTTGGACTCAAAGGAACACTCT TACACGTTGCTATTGTTCAGGTTTGTACATTTCTTTATTTCTCTCTCTTCTGCTCCCTTACTCACAAAGCCAATACAATA TTCATTGCATAGGCTCCAAAAAATTCTATACTTTAATTATCTAATCAAATTGCTATACATATGTCTAG
CDS sequence (LotjaGi2g1v0196800.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGCCACTCTATGTGGCCATGATCTTAGCCTATGGCTCAGTGAAATGGTGGAAAATCTTTTCCCCTGACCAATGCTC TGGCATCAACCGTTTTGTTGCTCTGTTTGCAGTTCCACTCCTTTCTTTCCACTTCATAGCCTCCAACAACCCTTACAAGA TGAACATTCGATTCCTAGCTGCTGATACCCTTCAAAAGATCATAATCTTGATCATTCTAGCAATATGGAGCAACGTCTCC AAAAAGGGTTGTTTGGAATGGACCATTACTCTGTTTTCCCTTTCCACACTCCCAAACACTCTGGTTATGGGTATCCCTCT GCTCAAAGGGATGTATGGTGAGTTCTCAGGGAGTTTAATGGTGCAGATTGTGGTCCTTCAGTGCATCATTTGGTACACTT TGATGCTCTTCATGTTTGAGTTCAGAGGAGCTAGAATGTTAATCTCTGAGCAGTTTCCTGACACTGCTGCTTCCATTGTC TCCATCCATGTTGATTCTGATGTCATGTCACTGGATGGAAGACAAGTTTTGGAGACTGAAGCTGAGATTAAAGAAGATGG GAAGCTTCATGTGACTGTGAGGAAATCCAATGCTTCAAGATCAGATATTTTCTCAAGAAGGTCTCATGGTCTTTCTTCCA CAACTCCTCGCCCTTCAAATCTCACCAATGCTGAGATATACTCTTTGCAATCCTCTAGAAACCCAACACCAAGAGGTTCC AGTTTCAACCATACAGATTTTTACTCCATGATGGCTGGTGGGAGAAACTCCAACTTTGGTGCCAATGATGTTTATGGTCT CTCAGCTTCAAGAGGACCAACTCCAAGGCCTTCTAACTATGATGAAGATGGTTCTGCTGCTGCTGCTGCTGGTGCAAATA AGCCAAAGTTTCATCATGGTTCTGGTGGTGGAACTGGTCACTACCCTGCACCAAACCCAGGAATGTTCTCTCCCAAAACT GTTGCTGCTAATGCTAACTCCAAGAGGCCTAATGGTCAAGCTCAGCAGAAACCAGAAGATGGGAAGGATCTTCACATGTT TGTTTGGAGTTCAAGTGCTTCACCAGTTTCTGATGTGTTTGGTGGGCATGAATTTGGTGCTCATGATCAGAAAGAAGTCA AATTGAATGTTTCTCCAGGAAAAGGTGAATTTTTGGTTGTTTTCTTTTCTTCATATCATTCATTTGGAGGGTCACAGAGA CACTCAAGAGGACTACCTAGAGAAAGATGA
Protein sequence (LotjaGi2g1v0196800.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVPLYVAMILAYGSVKWWKIFSPDQCSGINRFVALFAVPLLSFHFIASNNPYKMNIRFLAADTLQKIIILIILAIWSNVS KKGCLEWTITLFSLSTLPNTLVMGIPLLKGMYGEFSGSLMVQIVVLQCIIWYTLMLFMFEFRGARMLISEQFPDTAASIV SIHVDSDVMSLDGRQVLETEAEIKEDGKLHVTVRKSNASRSDIFSRRSHGLSSTTPRPSNLTNAEIYSLQSSRNPTPRGS SFNHTDFYSMMAGGRNSNFGANDVYGLSASRGPTPRPSNYDEDGSAAAAAGANKPKFHHGSGGGTGHYPAPNPGMFSPKT VAANANSKRPNGQAQQKPEDGKDLHMFVWSSSASPVSDVFGGHEFGAHDQKEVKLNVSPGKGEFLVVFFSSYHSFGGSQR HSRGLPRER
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | 1 | 234 | 234 | 6.5E-110 | ||
| PANTHER | 1 | 376 | 376 | 2.1E-189 | – | |
| Phobius | 1 | 27 | 27 | - | – | |
| PANTHER | 1 | 376 | 376 | 2.1E-189 | – | |
| Phobius | 28 | 46 | 19 | - | – | |
| TMHMM | 28 | 47 | 20 | - | – | |
| Phobius | 47 | 57 | 11 | - | – | |
| TMHMM | 54 | 76 | 23 | - | – | |
| Phobius | 58 | 76 | 19 | - | – | |
| Phobius | 77 | 87 | 11 | - | – | |
| TMHMM | 86 | 108 | 23 | - | – | |
| Phobius | 88 | 107 | 20 | - | – | |
| Phobius | 108 | 118 | 11 | - | – | |
| TMHMM | 115 | 137 | 23 | - | – | |
| Phobius | 119 | 139 | 21 | - | – | |
| Phobius | 140 | 409 | 270 | - | – | |
| MobiDBLite | 267 | 340 | 74 | - | – | |
| MobiDBLite | 319 | 334 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi2g1v0196800.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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