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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0210600 |
| Transcript ID | LotjaGi2g1v0210600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Lysine-specific histone demethylase 1-1-like protein; TAIR: AT1G62830.1 LSD1-like 1; Swiss-Prot: sp|Q8VXV7|LDL1_ARATH Lysine-specific histone demethylase 1 homolog 1; TrEMBL-Plants: tr|I1L4D4|I1L4D4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0210600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:65771027..65773839) extracted from Lotus japonicus Gifu genome v1.2.
GTCGGTTTCCAGTTTCAAATCTCACCGACTTAATGTGATCCAACGGTTCAAAGATGGGGTAGCAGCACATGACTTAGTCA GTAACACACCTTACACCCTGCCCATTCTTATAACCACATACTTCCTAAAGTGACACTCACTCACAATTCACAAACTATGG CGTCGGAACCGCCACAACCCACCTTGCCGGAAAACGCCGCCGCCGCAATGTCCCCTCAAAACCCCACCCAGAACTCCTCC GAAGAACCAGACTCCTCTCTCCCCAACCAAACCACACCAGAATCCTCGGAGCAACAAAACCCAGCTCCTTCCCAACCCGA CCCGGTTCCTCCTCCAACCCGAAGACGCCGGCGTCGCAAGAAATTCTTCACGGAGTTCAACACCGCCGCCTCAATGGCAA AGAACCGCCGAAACGACGTCGCGAAGGACGGCGACGTCGATGCCCTCATCGCGCTTTCCGTGGGGTTCCCGGTGGATTCG CTAACGGAAGATGAGATTGAAGCGAGCGTGGTGTCCACGATCGGAGGGGTGGAGCAATCGAACTACATCATCGCCCGGAA CCACATTCTGGCGCGGTGGCGCTCCAACGTTTCCGTCTGGCTCACCATGGACAGCGTCCTCCGGTCCATTCGCTCCGAGC ACAAGGGTTACGTTGAACCCGCTTACCGGTTCTTATTGGAGCATGGTTACATCAACTTCGGCCTCGCGCCGGAGATAAAG GCCGCGAAATCGCGGTCCTTCGACGGGTCCGAGCGCGGGACGGTGATTGTGATCGGAGCTGGGTTTGCGGGTCTGGTTGC GGCGAGGCAATTGGTGTTCATGGGGTTCAAGGTTGTGATATTGGAGGGTAGGAACCGACCCGGTGGCCGGGTCAAGACGA GGAGGATGAAGGGTGGTGGTGGTGGTGATGGTGGTAATGGTGTTGAGGCTGCAGCTGATATTGGTGGGAGTGTTCTCACT GGAATAAATGGGAACCCTCTTGGGGTTTTGGCAAGGCAATTGGGTTTGCCACTTCATAAGGTTAGGGATCTTTGCCCTCT TTATTTGCCTGATGGAAAATCTGTTGATACTGAGATTGATTCGAGCGTTGAGGTTTCGTTTAACAAGTTGTTGGAGAGGG TTTGTAAGCTTAGGCAGGCTATGATTGAAGAGATTAAGTCGGTGGATATGCCGTTGGGTTCTGCTTTGGAGGCTTTTCGG AGGGTGTATCAGGTTGCTGAGGATAAGGTAGAGAGGATGTTGTTGAATTGGCATTTGGCTAATTTGGAGTATGCAAATGC TACTCTTATGTCTAACATGTCAATGGCTTATTGGGATCAGGATGATCCTTATGAGATGGGTGGTGATCATTGTTTCATTC CGGGGGGGAATGAGATATTTGTTCGCGCCTTGGCTGAGGGTCTTCCCATTTTCTATGGGAGGAATGTGGATCGGATCATG TATGGATGTGATGGGGTGAGTGTCTTTGCTGGTGGGCAGGAGTTTCGCGGGGACATGGCGCTTTGCACCGTGCCCTTGGG GGTGCTTAAGAAGGGGTATATTCAGTTTGTCCCTGAACTTCCACAGAGGAAGAAAGATGCAATTCATAGGTTGGGTTTCG GGTTATTGAATAAGGTTGCAATGCTGTTTCCCCATAATTTCTGGGGTGGAAACATTGATACCTTTGGTCATCTGACTGAG GACTTGAGCATGAGGGGTGAATTTTTCCTGTTCTACAGCTACTCCTCTGTGTCTGGTGGACCGCTTCTCATCGCCCTTGT TGCTGGGGAAGCTGCGATTAGGTTTGAGATGATGTCACCAATAGAGTCAGTCAAAAGGGTGTTGGATATTCTGAAGGATA TTTTTAATCCAAAGGGAATTGATGTTCCTGATCCTGTTCAGGCTGTCTGCACTCGATGGGGAAAGGATCACTTCGCGCAC GGATCTTACTCTTACGTTGCTGTTGGATCATCAGGAGATGATTATGATTTACTTGCAGAGAGTGTTGGTGGGAGATTGTT CTTTGCTGGAGAGGCAACTAGCAAACAGTATCCTGCAACAATGCATGGAGCATTTATGAGTGGGTTGAGGGAGGCTGCAA ACATTTTGAGTGTAGCAAAGAGGAGGTCACCGGCGCCAGTTGACACAGTGAAAAATACCAAGGAGAATGATGATTTGGAC ACATTATTTGTAAAACCTGACCTGAGTTTTGGAAGCTTCTCTGCTTTGTTTGATCCGAAGATGAATGATCTTGATTCTAG TGCATTGCTAAGGGTTAAAATTGGAGGAGCTGTATTGGAGTCTGCTAGTCTTTATCTTTATGCCTTGGTTTCAAAGAAGC AGGTCATTGAGTTGAGTCAGGTGGAGGGTGATGAGAACAGGGTGAGAATGTTAAGCCGCAATTTTGGGGTGAGTTTGGTT GGGAGGAAGGGTTTAAGTAGTGTTGCTGAATCTCTTATTGCAAACATAAAACTGTGTAGATCCATCCAACCTTAGTTAAG CAGAAAATGGTGTTGTCCACAGGAATGAAAGTTCTTAGCATGATAATTGGTATAACCTCCTGGCTCTTGTTAACTGTATC CAACATAAAACCTCTGCCCCCTTAGCATTTTTAGAATGTATCAGTAGAGCTCTGACCCATTATAGAAGCTTAAAATGCAT TTGGCACATTATGCTGTGTTTTACTTTTCGTGATGCACAATGCACCAAATTTTAGGATGCTTATTTTTCTCACCATTGAA ATAGGAATGAAGATCCTCTCAAGCGAATTGACAATGTGAAGTGAAATGTTATATTTATCTCTTTCTTTATAAATATAATT TGGGTTTCACCTA
CDS sequence (LotjaGi2g1v0210600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGTCGGAACCGCCACAACCCACCTTGCCGGAAAACGCCGCCGCCGCAATGTCCCCTCAAAACCCCACCCAGAACTC CTCCGAAGAACCAGACTCCTCTCTCCCCAACCAAACCACACCAGAATCCTCGGAGCAACAAAACCCAGCTCCTTCCCAAC CCGACCCGGTTCCTCCTCCAACCCGAAGACGCCGGCGTCGCAAGAAATTCTTCACGGAGTTCAACACCGCCGCCTCAATG GCAAAGAACCGCCGAAACGACGTCGCGAAGGACGGCGACGTCGATGCCCTCATCGCGCTTTCCGTGGGGTTCCCGGTGGA TTCGCTAACGGAAGATGAGATTGAAGCGAGCGTGGTGTCCACGATCGGAGGGGTGGAGCAATCGAACTACATCATCGCCC GGAACCACATTCTGGCGCGGTGGCGCTCCAACGTTTCCGTCTGGCTCACCATGGACAGCGTCCTCCGGTCCATTCGCTCC GAGCACAAGGGTTACGTTGAACCCGCTTACCGGTTCTTATTGGAGCATGGTTACATCAACTTCGGCCTCGCGCCGGAGAT AAAGGCCGCGAAATCGCGGTCCTTCGACGGGTCCGAGCGCGGGACGGTGATTGTGATCGGAGCTGGGTTTGCGGGTCTGG TTGCGGCGAGGCAATTGGTGTTCATGGGGTTCAAGGTTGTGATATTGGAGGGTAGGAACCGACCCGGTGGCCGGGTCAAG ACGAGGAGGATGAAGGGTGGTGGTGGTGGTGATGGTGGTAATGGTGTTGAGGCTGCAGCTGATATTGGTGGGAGTGTTCT CACTGGAATAAATGGGAACCCTCTTGGGGTTTTGGCAAGGCAATTGGGTTTGCCACTTCATAAGGTTAGGGATCTTTGCC CTCTTTATTTGCCTGATGGAAAATCTGTTGATACTGAGATTGATTCGAGCGTTGAGGTTTCGTTTAACAAGTTGTTGGAG AGGGTTTGTAAGCTTAGGCAGGCTATGATTGAAGAGATTAAGTCGGTGGATATGCCGTTGGGTTCTGCTTTGGAGGCTTT TCGGAGGGTGTATCAGGTTGCTGAGGATAAGGTAGAGAGGATGTTGTTGAATTGGCATTTGGCTAATTTGGAGTATGCAA ATGCTACTCTTATGTCTAACATGTCAATGGCTTATTGGGATCAGGATGATCCTTATGAGATGGGTGGTGATCATTGTTTC ATTCCGGGGGGGAATGAGATATTTGTTCGCGCCTTGGCTGAGGGTCTTCCCATTTTCTATGGGAGGAATGTGGATCGGAT CATGTATGGATGTGATGGGGTGAGTGTCTTTGCTGGTGGGCAGGAGTTTCGCGGGGACATGGCGCTTTGCACCGTGCCCT TGGGGGTGCTTAAGAAGGGGTATATTCAGTTTGTCCCTGAACTTCCACAGAGGAAGAAAGATGCAATTCATAGGTTGGGT TTCGGGTTATTGAATAAGGTTGCAATGCTGTTTCCCCATAATTTCTGGGGTGGAAACATTGATACCTTTGGTCATCTGAC TGAGGACTTGAGCATGAGGGGTGAATTTTTCCTGTTCTACAGCTACTCCTCTGTGTCTGGTGGACCGCTTCTCATCGCCC TTGTTGCTGGGGAAGCTGCGATTAGGTTTGAGATGATGTCACCAATAGAGTCAGTCAAAAGGGTGTTGGATATTCTGAAG GATATTTTTAATCCAAAGGGAATTGATGTTCCTGATCCTGTTCAGGCTGTCTGCACTCGATGGGGAAAGGATCACTTCGC GCACGGATCTTACTCTTACGTTGCTGTTGGATCATCAGGAGATGATTATGATTTACTTGCAGAGAGTGTTGGTGGGAGAT TGTTCTTTGCTGGAGAGGCAACTAGCAAACAGTATCCTGCAACAATGCATGGAGCATTTATGAGTGGGTTGAGGGAGGCT GCAAACATTTTGAGTGTAGCAAAGAGGAGGTCACCGGCGCCAGTTGACACAGTGAAAAATACCAAGGAGAATGATGATTT GGACACATTATTTGTAAAACCTGACCTGAGTTTTGGAAGCTTCTCTGCTTTGTTTGATCCGAAGATGAATGATCTTGATT CTAGTGCATTGCTAAGGGTTAAAATTGGAGGAGCTGTATTGGAGTCTGCTAGTCTTTATCTTTATGCCTTGGTTTCAAAG AAGCAGGTCATTGAGTTGAGTCAGGTGGAGGGTGATGAGAACAGGGTGAGAATGTTAAGCCGCAATTTTGGGGTGAGTTT GGTTGGGAGGAAGGGTTTAAGTAGTGTTGCTGAATCTCTTATTGCAAACATAAAACTGTGTAGATCCATCCAACCTTAG
Protein sequence (LotjaGi2g1v0210600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASEPPQPTLPENAAAAMSPQNPTQNSSEEPDSSLPNQTTPESSEQQNPAPSQPDPVPPPTRRRRRRKKFFTEFNTAASM AKNRRNDVAKDGDVDALIALSVGFPVDSLTEDEIEASVVSTIGGVEQSNYIIARNHILARWRSNVSVWLTMDSVLRSIRS EHKGYVEPAYRFLLEHGYINFGLAPEIKAAKSRSFDGSERGTVIVIGAGFAGLVAARQLVFMGFKVVILEGRNRPGGRVK TRRMKGGGGGDGGNGVEAAADIGGSVLTGINGNPLGVLARQLGLPLHKVRDLCPLYLPDGKSVDTEIDSSVEVSFNKLLE RVCKLRQAMIEEIKSVDMPLGSALEAFRRVYQVAEDKVERMLLNWHLANLEYANATLMSNMSMAYWDQDDPYEMGGDHCF IPGGNEIFVRALAEGLPIFYGRNVDRIMYGCDGVSVFAGGQEFRGDMALCTVPLGVLKKGYIQFVPELPQRKKDAIHRLG FGLLNKVAMLFPHNFWGGNIDTFGHLTEDLSMRGEFFLFYSYSSVSGGPLLIALVAGEAAIRFEMMSPIESVKRVLDILK DIFNPKGIDVPDPVQAVCTRWGKDHFAHGSYSYVAVGSSGDDYDLLAESVGGRLFFAGEATSKQYPATMHGAFMSGLREA ANILSVAKRRSPAPVDTVKNTKENDDLDTLFVKPDLSFGSFSALFDPKMNDLDSSALLRVKIGGAVLESASLYLYALVSK KQVIELSQVEGDENRVRMLSRNFGVSLVGRKGLSSVAESLIANIKLCRSIQP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 67 | 67 | - | – | |
| Phobius | 1 | 202 | 202 | - | – | |
| MobiDBLite | 14 | 50 | 37 | - | – | |
| PANTHER | 42 | 768 | 727 | 2.1E-285 | – | |
| PANTHER | 42 | 768 | 727 | 2.1E-285 | – | |
| ProSiteProfiles | 89 | 190 | 102 | 16.005 | ||
| SUPERFAMILY | 95 | 189 | 95 | 1.08E-20 | ||
| Gene3D | 104 | 183 | 80 | 5.7E-15 | ||
| Pfam | 105 | 181 | 77 | 2.6E-10 | ||
| SUPERFAMILY | 201 | 645 | 445 | 2.53E-72 | ||
| Gene3D | 203 | 642 | 440 | 1.3E-92 | ||
| Phobius | 203 | 228 | 26 | - | – | |
| Pfam | 210 | 644 | 435 | 4.7E-94 | ||
| Phobius | 229 | 478 | 250 | - | – | |
| Gene3D | 289 | 599 | 311 | 1.3E-92 | – | |
| Phobius | 479 | 496 | 18 | - | – | |
| SUPERFAMILY | 480 | 593 | 114 | 1.7E-25 | – | |
| Phobius | 497 | 515 | 19 | - | – | |
| Phobius | 516 | 536 | 21 | - | – | |
| Phobius | 537 | 772 | 236 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi2g1v0210600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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