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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0219200 |
| Transcript ID | LotjaGi2g1v0219200.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Rac-like GTP binding protein; TAIR: AT4G28950.1 RHO-related protein from plants 9; Swiss-Prot: sp|O82480|RAC7_ARATH Rac-like GTP-binding protein ARAC7; TrEMBL-Plants: tr|I3SR86|I3SR86_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0219200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:67441245..67444787) extracted from Lotus japonicus Gifu genome v1.2.
ATGATGAGTGCTTCAAAGTTCATTAAATGTGTCACTGTTGGGGATGGAGCTGTTGGGAAAACCTGCATGCTCATTTGCTA CACCAGCAACAAGTTCCCCACTGTATGTTTCTTTATCCATTAATTTTCCTTGTTTAATTTTCTTCCCATTTTTGGATTTT TCATTTGAATGGTGCTTTTCCTACACATATAGACACCATATAAACAAGATAAAGTTTTGGGTTTTTTTCTATATTGGGAC ATTTATTGCAATGTGCTGAGATGCTTCATTATCTGTGTTCTGGGTTTTGTGTTTCTGATGCATGGATGATGTATGCTCAC TCCTTTTCCTGTTTTTCTTTTTTCCTTTTTGGATTGCAGGATTACATACCCACAGTATTTGATAACTTTAGTGCTAATGT AGCTGTGGATGGAAGCATTGTCAATTTGGGGCTTTGGGACACAGCAGGTACTAGGAGCTCCCCCCACTTGAGTTTTTATG GTCCAGTACTAAGTTTTGGTTCTCTAATTTTGATACTTTTTTGGTCCAATTGTTTTAAAGGCCAGGAAGACTATAGTAGG TTGAGGCCACTGAGCTACAGGGGAGCAGACATATTTGTGTTGGCATTCTCATTGATTAGCAGAGCTAGCTATGAAAATGT TCTCAAGAAGGTTCATGCCTATCTCTGCTTCCTCATATCTTACTTTTTCTCTCTTGTTTCTATTTTTGGATTTTGGATTA AAGTTTTCAAAGTGTGTCTTTTTCTTCAAGACTTCCTTTGAATGTATGAGTAAATTGAGAGGAAAGGAAAATAGTTAATA GAAAACATAGAACAAAGTTCATAGTGAAAAACATTTTCTATGGTACTACAGAAGACTTAAATGAAAGAAAATAGTTTAAC TATGCCCTTGTTTCAAATAGCTTTGAAATTGTTGATTAACATATTGTCAAGCATTTTGTTTTAATGTTGAGAGAAGGAAA TTTAGTTTTCAAAATGTTAAAGAGTGACTCTTTTAAACCGTTTAGAACAACAGCTTCAAGCCAACAACAAATAAATTGAC AGGCACGATATTCAAATACAGGATCACTAAGCAGAGAAATCAAGTTGAATAATGAATATTTGATTTAAAAGAGCTTCAAT GATCACTGGTTAATTTTATATAATCTTGGTCTTTTGTTGATTTTTGTCACCTTCTTTGACTTTTCATTTTTGCCTATTGA TGGCTACTTATAGACAGGGATAGAAAATTCAACAGAGAGAGGGGGGAAGGGAATATACTGGTTCAATCTGATCCAAAAAT AAAACTTAAAATAATGTTAACTGTTGAGTGAGTACAGTATCAGATAATTATAGTTCAAAAACATTGATGGTGTGTCATGA TGCTTATAATATTTTCAAGCAGTGCTTATAAAACTAGCTGCACTAAATCAAACAACTCATTTTGGGAAAAGGTATCACTG TAACTTAATTGCTAAACTGTTATTTTACATTTCCGTATCTACTAACATTATTATTTAGGCTTAATTCCATTTTGAGCCCC TGATCTTTCAAAAATAAGCGATCGGGGCCCCCCGTGTTTAAACGTAGCGGTCAGGCACCCCAGTGTTTAAAAAACGTGCG TTCCAAGCCCTTCTGTTAAGTACCGTTTGTTTGACCAAACGGAGCCAGTGACGTGGCGTTTTTTTTTCATTCTTAATTCC ACTTTGAGCCCCTGATCTTTAAAAAATGAGCGATCGCCCCCCTCCCCCCCGGTGACTTGACCAAAATGAGCGATGACCAA ACGGAGCCACTTTGGGCCCCTGATCTTTAAACGTAGCGGTCAGGCACCCCAACGTTTCAAAAACGTGCGTTCCAAGCCCT TTTGTTAAGTGACGTCACTGACTCCGTTTGGTCAAACAAACGACACTTTACAGAAGGGCTTGGAACGCACGTTTTTGAGA CGTTGGGGTGCCTGACCGCTACGTTTAAACACGGGGGCCCCGATCACTCATTTTTAAAAGATCAGGGGCCCAAAGTGGAA TTAAGCCAAGCCTATTATTTATGTAGCAGAAAATTGTTTTCTATGATATTTTACTAGTAATTTATGTGAATAATTTTTAA CAACTAATATTGATAATAATTGTGTTAGGATGTAAGGGAAGGGGAAACTAGTTAGGGGCTTAGAGGTTGTTAAAGTAGTT AGTAGCAGAAGGTGAAGCTATATAAATAGATAGAATCAGAATAGGAGGATTATTATCATTGTTGGTTTGTGATTAAAAGG AGAAATCCTCTGGGAAAGGGAACCCATTGGGGAGAATTCATCCTCCATGTATGTGTTCAATTTTCAGTAACACAATTCCT CTTTTTCAGTTCTGCCAGTCAATCTTTGTCTTCACTTTCTGGGTTACTATCAAGTTGATTTAAAAAAAAGGTCATAACGA GGGTGTTTATGTGTTTATAACATAAAATTCTCTCTCATTACTATAAAGAAAATCACTTACATCATTTTTTTCTTTCTTTT CATCCAAACATGAAGGAAGGAAACAGAATCGTACTTATTTTATTGTTTTCATTTTCACTTCAAATGCAAACTAAGCTTAA GTCTGTAACTTTTTTGTTCTGCATACAGGGAATATGTGCATGTTTTCATTGTGTTTGGCGTAAGCAATGATGAACCATCT TCAACATAGCATTCATGTCCACTTAATGTTGTTTATTTAACATATAGTGCAGTTACTCATCTTTTTTCTTTATATTCTTT TTCAGTGGATGCCAGAATTGCGTAGATTTGCACCTAATGTTCCAATTGTTCTTGTTGGTACGAAGTTAGGTAAGCAGCTG CACCTATGAAATTTTGTACACTATTTTCTATGCTGGTTTTCTAACTGAGGAAATAAGTGAATGACACAATGCATTGAATT GTTGATTCTAGATCTTCGTGAAGATCGGGGATATTTTGCTGATCACATGGGATCTAATGTTATAACATCTGCTGAGGTAT GAATACTTTAGATTAGCTTTTCTGTAATATGTATTAATGAAGCCCTTTATGTATTAAGTATAGAAAACTTCTCATTCACT AATCTTAGCACATTACTTACAGGGGGAAGAACTAAGGAAACAAATAGGTGCAGCTGCTTACATTGAGTGCAGCTCGAAGA CTCAACAGGTAGTGGGTTTAAATTTCATTTTGAATCCATAGAGGTCAGCTCTTGTATGATGTAATGTACTTTGGTTTATC TGTAGAGAATCTTATGATGAAGATATATTTTCATTTTTAGAATGTCAAAGCAGTTTTTGATACTGCAATTAAGGTTGTCC TTCAACCTCCAAGGAGGAAAGAAATGGCTAGTAAGAAAAGGCATAGAAGGTCTGGCTGCTCATTTGTGTAAGTACCTCTT ACTTCTATTGAGTTTCAATCATTCTAATGATTTATCTTAGCATTTGATGGATGATGTTTTCATATCTATTCATAGTTCAA GTTAAGGATTTGATGATAGAATAGTGTATGTATACTTTTCTTGGAGACTTCCCTAATGAATAAGGAGATTGAATTGCTAG GCAATGTGAATATTGCAGCTTAT
CDS sequence (LotjaGi2g1v0219200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGCATTGTCAATTTGGGGCTTTGGGACACAGCAGGTACTAGGAGAAGACTATAGTAGGTTGAGGCCACTGAGCTA CAGGGGAGCAGACATATTTGTGTTGGCATTCTCATTGATTAGCAGAGCTAGCTATGAAAATGTTCTCAAGAAGTGGATGC CAGAATTGCGTAGATTTGCACCTAATGTTCCAATTGTTCTTGTTGGTACGAAGTTAGATCTTCGTGAAGATCGGGGATAT TTTGCTGATCACATGGGATCTAATGGGGAAGAACTAAGGAAACAAATAGGTGCAGCTGCTTACATTGAGTGCAGCTCGAA GACTCAACAGAATGTCAAAGCAGTTTTTGATACTGCAATTAAGGTTGTCCTTCAACCTCCAAGGAGGAAAGAAATGGCTA GTAAGAAAAGGCATAGAAGGTCTGGCTGCTCATTTGTGAGATTGAATTGCTAG
Protein sequence (LotjaGi2g1v0219200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEALSIWGFGTQQVLGEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGY FADHMGSNGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRKEMASKKRHRRSGCSFVRLNC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 150 | 150 | 13.415 | – | |
| Phobius | 1 | 16 | 16 | - | – | |
| Phobius | 1 | 2 | 2 | - | – | |
| Gene3D | 2 | 129 | 128 | 2.5E-34 | – | |
| Phobius | 3 | 11 | 9 | - | – | |
| SMART | 9 | 126 | 118 | 1.2E-5 | – | |
| SMART | 11 | 126 | 116 | 5.7E-36 | – | |
| Phobius | 12 | 16 | 5 | - | – | |
| SMART | 14 | 126 | 113 | 8.1E-4 | – | |
| PANTHER | 16 | 147 | 132 | 3.5E-74 | – | |
| PANTHER | 16 | 147 | 132 | 3.5E-74 | – | |
| Pfam | 17 | 124 | 108 | 1.5E-23 | ||
| TIGRFAM | 17 | 118 | 102 | 2.8E-12 | ||
| Phobius | 17 | 31 | 15 | - | – | |
| SUPERFAMILY | 17 | 124 | 108 | 9.3E-26 | ||
| Phobius | 32 | 49 | 18 | - | – | |
| Phobius | 50 | 150 | 101 | - | – | |
| PRINTS | 61 | 74 | 14 | 1.5E-10 | – | |
| PRINTS | 101 | 123 | 23 | 1.5E-10 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi2g1v0219200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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