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LotjaGi2g1v0219200.3

Overview

Field Value
Gene ID LotjaGi2g1v0219200
Transcript ID LotjaGi2g1v0219200.3
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Rac-like GTP binding protein; TAIR: AT4G28950.1 RHO-related protein from plants 9; Swiss-Prot: sp|O82480|RAC7_ARATH Rac-like GTP-binding protein ARAC7; TrEMBL-Plants: tr|I3SR86|I3SR86_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0219200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:67441259..67444787) extracted from Lotus japonicus Gifu genome v1.2.

ATGATGAGTGCTTCAAAGTTCATTAAATGTGTCACTGTTGGGGATGGAGCTGTTGGGAAAACCTGCATGCTCATTTGCTA CACCAGCAACAAGTTCCCCACTGTATGTTTCTTTATCCATTAATTTTCCTTGTTTAATTTTCTTCCCATTTTTGGATTTT TCATTTGAATGGTGCTTTTCCTACACATATAGACACCATATAAACAAGATAAAGTTTTGGGTTTTTTTCTATATTGGGAC ATTTATTGCAATGTGCTGAGATGCTTCATTATCTGTGTTCTGGGTTTTGTGTTTCTGATGCATGGATGATGTATGCTCAC TCCTTTTCCTGTTTTTCTTTTTTCCTTTTTGGATTGCAGGATTACATACCCACAGTATTTGATAACTTTAGTGCTAATGT AGCTGTGGATGGAAGCATTGTCAATTTGGGGCTTTGGGACACAGCAGGTACTAGGAGCTCCCCCCACTTGAGTTTTTATG GTCCAGTACTAAGTTTTGGTTCTCTAATTTTGATACTTTTTTGGTCCAATTGTTTTAAAGGCCAGGAAGACTATAGTAGG TTGAGGCCACTGAGCTACAGGGGAGCAGACATATTTGTGTTGGCATTCTCATTGATTAGCAGAGCTAGCTATGAAAATGT TCTCAAGAAGGTTCATGCCTATCTCTGCTTCCTCATATCTTACTTTTTCTCTCTTGTTTCTATTTTTGGATTTTGGATTA AAGTTTTCAAAGTGTGTCTTTTTCTTCAAGACTTCCTTTGAATGTATGAGTAAATTGAGAGGAAAGGAAAATAGTTAATA GAAAACATAGAACAAAGTTCATAGTGAAAAACATTTTCTATGGTACTACAGAAGACTTAAATGAAAGAAAATAGTTTAAC TATGCCCTTGTTTCAAATAGCTTTGAAATTGTTGATTAACATATTGTCAAGCATTTTGTTTTAATGTTGAGAGAAGGAAA TTTAGTTTTCAAAATGTTAAAGAGTGACTCTTTTAAACCGTTTAGAACAACAGCTTCAAGCCAACAACAAATAAATTGAC AGGCACGATATTCAAATACAGGATCACTAAGCAGAGAAATCAAGTTGAATAATGAATATTTGATTTAAAAGAGCTTCAAT GATCACTGGTTAATTTTATATAATCTTGGTCTTTTGTTGATTTTTGTCACCTTCTTTGACTTTTCATTTTTGCCTATTGA TGGCTACTTATAGACAGGGATAGAAAATTCAACAGAGAGAGGGGGGAAGGGAATATACTGGTTCAATCTGATCCAAAAAT AAAACTTAAAATAATGTTAACTGTTGAGTGAGTACAGTATCAGATAATTATAGTTCAAAAACATTGATGGTGTGTCATGA TGCTTATAATATTTTCAAGCAGTGCTTATAAAACTAGCTGCACTAAATCAAACAACTCATTTTGGGAAAAGGTATCACTG TAACTTAATTGCTAAACTGTTATTTTACATTTCCGTATCTACTAACATTATTATTTAGGCTTAATTCCATTTTGAGCCCC TGATCTTTCAAAAATAAGCGATCGGGGCCCCCCGTGTTTAAACGTAGCGGTCAGGCACCCCAGTGTTTAAAAAACGTGCG TTCCAAGCCCTTCTGTTAAGTACCGTTTGTTTGACCAAACGGAGCCAGTGACGTGGCGTTTTTTTTTCATTCTTAATTCC ACTTTGAGCCCCTGATCTTTAAAAAATGAGCGATCGCCCCCCTCCCCCCCGGTGACTTGACCAAAATGAGCGATGACCAA ACGGAGCCACTTTGGGCCCCTGATCTTTAAACGTAGCGGTCAGGCACCCCAACGTTTCAAAAACGTGCGTTCCAAGCCCT TTTGTTAAGTGACGTCACTGACTCCGTTTGGTCAAACAAACGACACTTTACAGAAGGGCTTGGAACGCACGTTTTTGAGA CGTTGGGGTGCCTGACCGCTACGTTTAAACACGGGGGCCCCGATCACTCATTTTTAAAAGATCAGGGGCCCAAAGTGGAA TTAAGCCAAGCCTATTATTTATGTAGCAGAAAATTGTTTTCTATGATATTTTACTAGTAATTTATGTGAATAATTTTTAA CAACTAATATTGATAATAATTGTGTTAGGATGTAAGGGAAGGGGAAACTAGTTAGGGGCTTAGAGGTTGTTAAAGTAGTT AGTAGCAGAAGGTGAAGCTATATAAATAGATAGAATCAGAATAGGAGGATTATTATCATTGTTGGTTTGTGATTAAAAGG AGAAATCCTCTGGGAAAGGGAACCCATTGGGGAGAATTCATCCTCCATGTATGTGTTCAATTTTCAGTAACACAATTCCT CTTTTTCAGTTCTGCCAGTCAATCTTTGTCTTCACTTTCTGGGTTACTATCAAGTTGATTTAAAAAAAAGGTCATAACGA GGGTGTTTATGTGTTTATAACATAAAATTCTCTCTCATTACTATAAAGAAAATCACTTACATCATTTTTTTCTTTCTTTT CATCCAAACATGAAGGAAGGAAACAGAATCGTACTTATTTTATTGTTTTCATTTTCACTTCAAATGCAAACTAAGCTTAA GTCTGTAACTTTTTTGTTCTGCATACAGGGAATATGTGCATGTTTTCATTGTGTTTGGCGTAAGCAATGATGAACCATCT TCAACATAGCATTCATGTCCACTTAATGTTGTTTATTTAACATATAGTGCAGTTACTCATCTTTTTTCTTTATATTCTTT TTCAGTGGATGCCAGAATTGCGTAGATTTGCACCTAATGTTCCAATTGTTCTTGTTGGTACGAAGTTAGGTAAGCAGCTG CACCTATGAAATTTTGTACACTATTTTCTATGCTGGTTTTCTAACTGAGGAAATAAGTGAATGACACAATGCATTGAATT GTTGATTCTAGATCTTCGTGAAGATCGGGGATATTTTGCTGATCACATGGGATCTAATGTTATAACATCTGCTGAGGTAT GAATACTTTAGATTAGCTTTTCTGTAATATGTATTAATGAAGCCCTTTATGTATTAAGTATAGAAAACTTCTCATTCACT AATCTTAGCACATTACTTACAGGGGGAAGAACTAAGGAAACAAATAGGTGCAGCTGCTTACATTGAGTGCAGCTCGAAGA CTCAACAGGTAGTGGGTTTAAATTTCATTTTGAATCCATAGAGGTCAGCTCTTGTATGATGTAATGTACTTTGGTTTATC TGTAGAGAATCTTATGATGAAGATATATTTTCATTTTTAGAATGTCAAAGCAGTTTTTGATACTGCAATTAAGGTTGTCC TTCAACCTCCAAGGAGGAAAGAAATGGCTAGTAAGAAAAGGCATAGAAGGTCTGGCTGCTCATTTGTGTAAGTACCTCTT ACTTCTATTGAGTTTCAATCATTCTAATGATTTATCTTAGCATTTGATGGATGATGTTTTCATATCTATTCATAGTTCAA GTTAAGGATTTGATGATAGAATAGTGTATGTATACTTTTCTTGGAGACTTCCCTAATGAATAAGGAGATTGAATTGCTAG GCAATGTGA
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0219200.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAAGCATTGTCAATTTGGGGCTTTGGGACACAGCAGGTACTAGGAGAAGACTATAGTAGGTTGAGGCCACTGAGCTA CAGGGGAGCAGACATATTTGTGTTGGCATTCTCATTGATTAGCAGAGCTAGCTATGAAAATGTTCTCAAGAAGTGGATGC CAGAATTGCGTAGATTTGCACCTAATGTTCCAATTGTTCTTGTTGGTACGAAGTTAGATCTTCGTGAAGATCGGGGATAT TTTGCTGATCACATGGGATCTAATGTTATAACATCTGCTGAGGGGGAAGAACTAAGGAAACAAATAGGTGCAGCTGCTTA CATTGAGTGCAGCTCGAAGACTCAACAGAATGTCAAAGCAGTTTTTGATACTGCAATTAAGGTTGTCCTTCAACCTCCAA GGAGGAAAGAAATGGCTAGTAAGAAAAGGCATAGAAGGTCTGGCTGCTCATTTGTGAGATTGAATTGCTAG
Download CDS Sequence

Protein sequence (LotjaGi2g1v0219200.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEALSIWGFGTQQVLGEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGY FADHMGSNVITSAEGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRKEMASKKRHRRSGCSFVRLNC
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
ProSiteProfiles
PS51419
1 156 156 14.287 –
Phobius
SIGNAL_PEPTIDE
1 16 16 - –
Phobius
SIGNAL_PEPTIDE_N_REGION
1 2 2 - –
Gene3D
G3DSA:3.40.50.300
2 135 134 9.1E-37 –
Phobius
SIGNAL_PEPTIDE_H_REGION
3 11 9 - –
SMART
SM00175
9 132 124 1.5E-6 –
SMART
SM00174
11 132 122 1.5E-38 –
Phobius
SIGNAL_PEPTIDE_C_REGION
12 16 5 - –
SMART
SM00173
14 132 119 1.0E-4 –
PANTHER
PTHR24072
16 153 138 1.4E-80 –
PANTHER
PTHR24072:SF127
16 153 138 1.4E-80 –
SUPERFAMILY
SSF52540
17 130 114 1.1E-27
IPR027417
Pfam
PF00071
17 130 114 4.7E-26
IPR001806
Phobius
NON_CYTOPLASMIC_DOMAIN
17 31 15 - –
Phobius
TRANSMEMBRANE
32 49 18 - –
Phobius
CYTOPLASMIC_DOMAIN
50 156 107 - –
PRINTS
PR00449
61 74 14 1.5E-10 –
PRINTS
PR00449
107 129 23 1.5E-10 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003924
Molecular function GTPase activity Catalysis of the reaction: GTP + H2O = GDP + phosphate.
Subterm of
GO:0005525
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0219200.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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