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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0237200 |
| Transcript ID | LotjaGi2g1v0237200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Methionyl-tRNA formyltransferase; TAIR: AT1G66520.1 formyltransferase; Swiss-Prot: sp|Q65JS5|FMT_BACLD Methionyl-tRNA formyltransferase; TrEMBL-Plants: tr|A0A0L9T444|A0A0L9T444_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0237200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:69821812..69826388) extracted from Lotus japonicus Gifu genome v1.2.
TGAAAACAGAACAGAGTGGAGTCTATTGTGATAAGGCAGAAGAAGAAGGCGTGTGTGTAGTTAGCTAGCTGTATTCGAAC GAACGGTGTTGTTTGAGAATGATTCGTCGGTTATGCTGCGTACAGAGCGCTTCTTCTTCTTCTACTTCTCCATCTCTCCC ATTCTCTTCCACTCCCACCAAGAAGAAACCCCTTGTCCTCCTAGGCGCACCTCAGGTCTCAGCAATCGTCCTCGACGCAC TTCTCACCGCTTCCACTTCTCCACATTCTTCATTCGAGGCAATTTCCCCCCATCACTTCTCAGTTCTCACCACCATGTTC AATTTCTGATTTGATAGTTTTTCTTTTTGGAATTTAGGTTGCGGCGATTGTAACTCAACCAAATGCCAGAAGAGACAGGG GAAAGAAGCTCATGCCATCTCCTTTGGCCAGCTATGCTCTTGAAAGGGGATTCTCTTCTCATCTCATTTTTACTCCTGAG CGAGCTGGAGATGTAACTAAATTATACTATTGTTTTCTATTTGTTCTGTTTATTGCGTCGCGGTCTTCTTTTGAGTTTGA ATGAAAAAAAATGAATTGCTTACTCACTTTTCTTCTTGAAGGATGCTTTCTTGTCAAATTTAAAAGCTTTGCAACCGGAG CTATGCATTACAGCAGCATATGGGAATATATTGCCTACCAAGTTTCTAGATATTCCACCATTAGGTTAGTCATTTTTCGC ACTGCCAATGCTAATGCCGTTATCTTTCTTTCATATTCATTGCTTAAACTACAATGGGGTATCCTTCATTATTACTAAAC TGATAGGACACGCAAACTCGGATTAGGGTTCCCTGCAGTCAGGACAATCGTAAATTCACGTGTTCAAGTAATCTGATTTG TTTGATTAGGATCGTATAACTCATATGTTTCGTTAAGATCGGATGTCTCAGATTAGCTCAAAATTTGACTGGATCGGAAC GAATCGTTCAGGTAATCTGACTGCAGTCAGGATTAATCGAACCTTTAAGATTCCTTGACTGCGTGGGTTTAGGATTTCCC TGATTGTAGGGAATTCAAATTTCTTCAACTCACACTACATTTGCATTGCAAAATTTATAAATAGTGAAACCTATAGCTTT AACACTGATTTTTTCTGTCTAATATCTCAGGAACAGTCAATATTCACCCTAGCCTGTTGCCAATGTATCGTGGTGCTGCT CCTGTTCAAAGAGCGTTGCAGGTATTTTTCCTTTTTCTGTGTGTCAGTTCATTTTAGTCTCTAAAGCCTTTATAACTTTT TTGTCATGAGGTTATTTTTGGATGCTACATATTGATTTGTACAATAGGATGGCGTTAAAGAAACTGGAGTATCATTAGCG TACACTGTTCGTGCACTGGATGCTGGACCTCTCATTGCTAGTGAAAGAGTTGAAGTTGATGATCAAATAAAGGTATGATT TTCTGTTGTCTTGGTTTAATACAAAAGGTTTTGCACGCAGGCTTTTTCTTTATCCGTAAAAAGTTTTTTTTTATAAGCCT TATCTGTAAAAAGATTAATGATCATATGATTGTCTTTAGTCCTCAACTTCTCTTTGATAATTAAACTTGGAATGTTTAAA CTATTGGTTTGAATGAGTAATACTACTGCATATTATATCAAGGCTTTTGCGCTCCTTTCAATGTATTAATAATTTCTTAT GCTCATTACTAGAATGTTCAGTAAATTTTATGTGCCCCCTTCTATCAGTGACTTTATCCACCCTCCCTTGAGAGGACATA TATGCTCTGCTATCTGCATTTTGAAATCAAGCATATGCAAAGGCAATGTGTATGTGCGTGTCTGTGTATTTGTAGCTGGC ATGTTTTGCTCTGTCGTTATGGGACTTGTGCTTAACTCTTCTTATTTGGTGAAACTTACAAGTTGCAACTTAGTTACTGC ATTTTCTCCCTGCTTCTGACAAATCTTTAGGTATCTATGTAGGCACCTGATTTGCTTGACCTTCTGTTTCACAAAGGTAT AACTCTTCTCTCCATGAATGTTACTTTAACTTATGCATTCCTTTGTTCTTTTCTCCCAGTGTTGTACTAGGCTATTGTTA TCAGACATTTTTATACAAAGTCTCTTTGTTACTGAATCAGTTCTTATCCTTATTTTATAATGCAGGATCTAATCTTCTAA TTCGGGAACTTCCTTCTATATTTGATGGATCAGCGAGAGTGAAGGCACAACCCCAAGATGACTCTAAGGTTACATTGGCT CCAAAGGTAGTGTTAGTTTTGATTATGTTACTTCAAACTTCAAAGTGAAATAGAAATGATTTTCCTATTGATGTTAGTTC AGTGTATATATCAGATTCTTCAATAAACCAGTTGTCTCTAAGAACTAAGAAGCATGTCCTTGAGAGAGATAATCTTGCAG GATCTTATATCAATTGCAGAGAATTAAGGATTTTATTTTTCTCCTTTTGATTCTGATAGCTTTCTACATGTGGAGCTCCT GTTGAAAAGACATATGTTTTCATGCTATTTATTTTTGCATAGTTTCACTCAGCCGTTGGCTAAACTCTTTAGAGTCATTG AGAGTCAAAAAGATAGATTTGGGAGATATTATATTATGTGCCTTTCTGTTCACTCCAGTATATATCCAATTATCCACAAT AGGAAAAGGAAAAGAAACACCAATATATACAGCTGATAAAATATCTTCCTTTTAGAGAATTCATCATATTTTGATTTCGC TATTTTATGCAGATAAGTCCAGATGAAACATGGCTAGGTTTTGATCAAGAAGCATGTGTTCTACATAATAAGGTAAACTT CATGATCTTATCTGAACTGCGCAGTTGTGACATAAAACTATTTTAGGTTCGTGCTTTTTCAGGGTGGCCAGGAACTAGAG CAAAGGTTTTAGTTGTTGACAAGAATGGTCAGCAGAAAACTTTGGAGTTTAAAATTATAACTACAAGAGTTTGCAGTCAT GAAAATGTGCAGTTCAATGAAGCAGATGATATTGCATTTGTCAATGGTGCATTGGTGTTTCCATGTGGAAGGGGCACTGC ACTTGAGGTATGTTTAGCTTTTAAATCAATCTTTGAAGTTTCTATGATCACTGCAGAGCTAAATCATGCTTACACCTGCA CTACCTAGATATGTAATTTTGGTAGAGGTCACAGGTTTTAGTTGTAAACTTGTAATGTGAACACTATAACCAGTATAATA TTAAGAAACCCAACAGAGAACTACTCCCAAAAATTGATCTTCTAAACTTGTAAATTTGTTTTGTTTTTGGTTTTGTCTCT ATGGGAAGCTCTTCTTATTCTTATATAAGTTTGATTCTTCACCTTCAGTTAATCTAAAAAATTCTGGGAGTAACTCTTTC AAAGCAAAGATCTCATTAAGCTGTAATTTTCTCTTTTTTTTTTCTCCAAACAAGTTATTCTTAAGAAAAAAACTTTCTAC CAGATTTTTTTCTTATTTTTGTTTTGAATTTATTTTCAAAACAATTTTAGAGAATTAAAAAAATAGTTCCTTCTGCAGTA GAGATTGAAAAATTGGAGAAAAATGGATTGTTTATTGTTAATTCCAAAATAATTTTGTTTCCAAGGATCTGCTTTTAACT ATAAACTAGAAGTTGTTCATTGCTTTTATAAATAATCATAAAGTAAACAATAATTTAAAGCAAAAAACATGGCAGTTATT TCAGAAGTTGTATTTTGAATTCATTTCGATTTACGCAATATGTTATCTCAAGCCGAAGTTACTACTTAATTAATATCTTC AACTTAAAATCACTATTAAATATAGTTAATGTTGCTTCAATAAAAAATTGGGAATTTCCCGTCCTGTTCTTTTGTCCAAG TGCTCTTTTTGAAATTCTGTGTTATGTATTGAAACTAATATCCAATACAATATCCTGTATGAAAAACAAATGGAGTTGGC TGTAAAGGCAATGTCTTTGGGGATCCAAATTTTTTATGCACACTTTATTCAAAGTTTCAAACAGCATTTTGTACTTTGAA AATGGGATCTCCATAAATATGTAATCTGTAATTACATGGAAATTTTCTGGAACATAGTCAAGCAGGTTTATGAAAATTGA TTGGTTTCAAAGATACAGTCAATATGCGTTTTTCCTTATTTCACGCGGAACAAGCATTGAAACTTTTACTTTTTAATCTG ACAAAGAGCACTTGTTTGTTACACGCATTTAGCACAGTTTTATATTCAAGTATTATTGCAGATCAATATGCCTTTCTGAA TTCAATGATGTTGTTATACTGTCAGGTATTGGAAGTTCAGCTTCCAGGAAAAAAGGTAGTAAATGCAGCTGCTTTTTGGA ATGGGCTACGGGGACAGAAGCTGAAGACATTATGAGAGGTGGTTTACCCAACAGAGCCTATTATTTAAGTTATCTTTAGG CTGTTTTGGCAATCAATTCCTTTTTTGTTTTCATTTTCTTCTTCATTTTATATGATTCATGTATAACTATCCTCTTTCGA ATTTCTCTATAAAAGGGCTTCTCAAACAAGCATTCTTTTTTGGTATCTTACGCACATTCACACACACACACACACACACA CACACACACACACAGAG
CDS sequence (LotjaGi2g1v0237200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTCGTCGGTTATGCTGCGTACAGAGCGCTTCTTCTTCTTCTACTTCTCCATCTCTCCCATTCTCTTCCACTCCCAC CAAGAAGAAACCCCTTGTCCTCCTAGGCGCACCTCAGGTCTCAGCAATCGTCCTCGACGCACTTCTCACCGCTTCCACTT CTCCACATTCTTCATTCGAGGTTGCGGCGATTGTAACTCAACCAAATGCCAGAAGAGACAGGGGAAAGAAGCTCATGCCA TCTCCTTTGGCCAGCTATGCTCTTGAAAGGGGATTCTCTTCTCATCTCATTTTTACTCCTGAGCGAGCTGGAGATGATGC TTTCTTGTCAAATTTAAAAGCTTTGCAACCGGAGCTATGCATTACAGCAGCATATGGGAATATATTGCCTACCAAGTTTC TAGATATTCCACCATTAGGAACAGTCAATATTCACCCTAGCCTGTTGCCAATGTATCGTGGTGCTGCTCCTGTTCAAAGA GCGTTGCAGGATGGCGTTAAAGAAACTGGAGTATCATTAGCGTACACTGTTCGTGCACTGGATGCTGGACCTCTCATTGC TAGTGAAAGAGTTGAAGTTGATGATCAAATAAAGGCACCTGATTTGCTTGACCTTCTGTTTCACAAAGGATCTAATCTTC TAATTCGGGAACTTCCTTCTATATTTGATGGATCAGCGAGAGTGAAGGCACAACCCCAAGATGACTCTAAGGTTACATTG GCTCCAAAGATAAGTCCAGATGAAACATGGCTAGGTTTTGATCAAGAAGCATGTGTTCTACATAATAAGGTTCGTGCTTT TTCAGGGTGGCCAGGAACTAGAGCAAAGGTTTTAGTTGTTGACAAGAATGGTCAGCAGAAAACTTTGGAGTTTAAAATTA TAACTACAAGAGTTTGCAGTCATGAAAATGTGCAGTTCAATGAAGCAGATGATATTGCATTTGTCAATGGTGCATTGGTG TTTCCATGTGGAAGGGGCACTGCACTTGAGGTATTGGAAGTTCAGCTTCCAGGAAAAAAGGTAGTAAATGCAGCTGCTTT TTGGAATGGGCTACGGGGACAGAAGCTGAAGACATTATGA
Protein sequence (LotjaGi2g1v0237200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIRRLCCVQSASSSSTSPSLPFSSTPTKKKPLVLLGAPQVSAIVLDALLTASTSPHSSFEVAAIVTQPNARRDRGKKLMP SPLASYALERGFSSHLIFTPERAGDDAFLSNLKALQPELCITAAYGNILPTKFLDIPPLGTVNIHPSLLPMYRGAAPVQR ALQDGVKETGVSLAYTVRALDAGPLIASERVEVDDQIKAPDLLDLLFHKGSNLLIRELPSIFDGSARVKAQPQDDSKVTL APKISPDETWLGFDQEACVLHNKVRAFSGWPGTRAKVLVVDKNGQQKTLEFKIITTRVCSHENVQFNEADDIAFVNGALV FPCGRGTALEVLEVQLPGKKVVNAAAFWNGLRGQKLKTL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 21 | 21 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 21 | 21 | - | – | |
| Phobius | 1 | 4 | 4 | - | – | |
| PANTHER | 2 | 358 | 357 | 1.2E-140 | – | |
| PANTHER | 2 | 358 | 357 | 1.2E-140 | – | |
| Phobius | 5 | 16 | 12 | - | – | |
| Phobius | 17 | 21 | 5 | - | – | |
| Phobius | 22 | 359 | 338 | - | – | |
| Gene3D | 25 | 245 | 221 | 1.5E-60 | – | |
| Hamap | 30 | 354 | 325 | 26.96 | ||
| SUPERFAMILY | 32 | 243 | 212 | 3.79E-47 | ||
| CDD | 33 | 244 | 212 | 7.84049E-84 | ||
| Pfam | 45 | 216 | 172 | 7.2E-34 | ||
| Pfam | 243 | 351 | 109 | 4.1E-18 | ||
| SUPERFAMILY | 244 | 353 | 110 | 2.16E-14 | ||
| CDD | 247 | 344 | 98 | 3.12287E-13 | – | |
| Gene3D | 247 | 358 | 112 | 8.3E-13 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | Methionyl-tRNA formyltransferase activity | Catalysis of the reaction: 10-formyltetrahydrofolate + L-methionyl-tRNA + H2O = tetrahydrofolate + N-formylmethionyl-tRNA. | ||
| Biological process | Biosynthetic process | The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones. | ||
| Molecular function | Hydroxymethyl-, formyl- and related transferase activity | Catalysis of the transfer of a hydroxymethyl- or formyl group from one compound (donor) to another (acceptor). | ||
| Biological process | Conversion of methionyl-tRNA to N-formyl-methionyl-tRNA | The modification process that results in the conversion of methionine charged on a tRNA(fMet) to N-formyl-methionine-tRNA(fMet). |
Expression pattern of LotjaGi2g1v0237200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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