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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0242000 |
| Transcript ID | LotjaGi2g1v0242000.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT5G40400.2 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9FND8|PP409_ARATH Pentatricopeptide repeat-containing protein At5g40400; TrEMBL-Plants: tr|I1K1K5|I1K1K5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0242000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:70463046..70467486) extracted from Lotus japonicus Gifu genome v1.2.
CTAAAACCAACTTTTCGTGAAAGTGAAACTTTTTGCGCGCAAGAGTTCTCTCCAGTCTCCCCCGACGGCGGCGACGGCGA ACCAGTGAACGCCGGTGAGCCAGCGGCGCAACTCTTCCGTCAATCTCCCTGCAGCAGAGGTTCCAGCCGTACCCCAACGT CGCTGTTACCCAAACCCCTTTTCTCTCTGCTAATTTGGGAGCTAGCTACCCATCACCATGATTCGTCGACCTTCAATCTC TGCTACCACTGTGCCCATTCTCTCAGAATCATTCTCCAACACAACCTTCTCACAGAAAAAATCACCTTCCTTTTCATCTT CTTCTTCTTCTTCCCTAGTCACTATACATGATTCTCAATCCAAACCCATTTCAAGTCCCTTTTACAATCTCCTCCCACCT ACCCAGAACCCCCATAACATAGTAAACCTCATTTCTTCACTCCTCAAACAGAAAAGTTTCCATCTTTCCCTTTTTCAAAA TGACATCAAAGGCATTCTCCCTCACATGGGTACCCATGAAATTTCTAGGGTTTTGCTCAGGTGCCAATCTGATCACTCTT CAGCTCTCACATTTTTCAATTGGGTTAAGAATGATTTGGGTGTTAAACCAGCTGTGCAGAACTATTGTGTAATTGTTCAC ATACTTGCTTGGTCTAGAGTGTTCTCTAAGGCCATGAAGTTGTTGTGTGAATTGATACACCTGGTTGAGGTTGAGGGTGT TTTTTCAAATGTGGATATTTATCAGAATTTGGTTTTGAGTACTGAGGATTGTAATTGGAATCCTGCAATATTTGATATGC TTATCAAGGCTTATGTGAAGGTTGGTATGGTTGAGAAGGGTTTGGTAACTTTTAGGAAGAATATTGAGGCTTGTTTTATT CCCAATGTGGTAGCTTGCAATTGTTTGCTGAGTGGTTTGTCTAAGTTTAATTATATTGATCAGTGCTGGGAAGTTTATGA AGAGATGGGAAGACTTGGAATTCACAGGAATGCTTTTACTTTCAACATTTTAACCAATGTTTTGTGTAAATACGGAGATA CGGATAAGGTTAATGGATTCTTGGAGAAAATGGAGGAAGAAGGATTTGAACCTGACTTGGTGACATATAACACACTCATT AATAGCTATTGTAAGAAAAGAAGGTTGGAGGATGCGTTTTATTTATACAAGATCATGTACATTAGAGGTGTGACGCCTAA TTTGATTTCACACTCAGCCTTGATGAATGGTCTTTGTGAAGAAGGGAAAATCAAGGAGGCTCATCAACTTTTTAACCAGA TGGTTCAGAGAGGGATAGATCCAGATGTTGTGTCGTATAATACTCTTATATCTGGTTATTGCAGAGAAGGTAAGGTGCAG ATGTCTAGATCGCTATTGCGTGAAATGATAGGAAGTGGAATTCGTCCTGACAGTGTCACTTGTAGGCTTATTGTTCAAGG ATATGCAAGGGATGGAAAGCTACTCTCAGCCTTGAATTTGGTTGTGGAGCTTCAGAAATTTGGAATTAAGATTCCTGAAA ATTTATATGATTATCTCATAGTTGCATTGTGCAAAGAAGGTCGACCATTTGCTGCTAGAAGTTTTCTGATAAGGATATCT CAGGATGGCTATGTGCCTGAAATCAGTACTTTCAATAGCCTGGTTGAGTCTCTATGTAAATTCAATAATGTGGAAGAGGC ACTAATTGTGAAATCTGAGATGCTAAAGAATAGTATGAGGCTGAGTCTCACTGCCTATAGAGCTATTATAAGCGGCTTGT GTAGAGTAAACAGGACTCTGGAAGCTGAAGCCTTGTTGGAGGAAATGGTTAGCTTAGGTATTCTACCTGATCTAGAAACT AAGAGGGCATTAATAAATGGATATTGTAAAGAAAATAATGTTGATAGAGCTGAGTCATTATTGAAATTCTTTGCCAAGGA GTTTCAACTTTACGACACTGAAAGCTACAATTCAGTTGTTAAAGTCTTTTGTGAGGTTGGTGATGTGGCAGAGCTGATGG AGCTTCAGGATAGGCTACTCAAGGTGGGGTATGTTCCAAATAGTTTAACATGCAAGTACGTGATTTGCGGATTGCAGAAA GTTATGGAACTAGATGATGAGATATTGAGACACAACATGCTAGAACCTTGAAAAATAACACACTTCCAATCTAAGACTGT ATCCAACATCTCACCTACGCAGAATACCTGAGCATGGCATACTTGAGTATCAAATAAGTTCATGGGCATAAGAGGATCGC TAGTATGTCAAGGATTTCTCTCATCATTGATGCCATGCTTTATTTGGCTGAAGGTGAGCTAAACTGGAAACAACTGAAGA GGGCTCATCCGTCACTATTGAATCATAGAATGACCACTCTTATCCATATGAGTCCATGCTGGTTTTTAAGCTTCTAATGG GATGCCTTAAGTACCTTCTACACGAAACCACTGAAGTAAGTGTTGGGTCAAGTCTGTTCTTGGTTCTGGTCGTTATATTT TATTACTGTGGTGAAATGTTGGATGGAATATTTATGTCATTGTTGTTTCTTTTTGGACCCTCTCGGGACTACAGGAAGTT AGTATTTGTTGTAGAACATGTGGTGGAGGCATATATAGTGGTACTGAAATCTCTGGCTGGATAGAAATTGGTGTGTATGT CCTCTGTGATTTCTTAGCTAAATTTGCATTCACTGCTGTCATGATTTTGCTTCCTTGATTGTCCCTTGCTCTCATGTTGT TGTTGATCTCTGTCAGCAGTTGATTACTGAGGCTCAACTATGTGCTGTTCAATTTCTGGGTACAATTCTTTTTCTGTTCG TGTGTCTGCAACGGAACCGTGGTGGTCATGAGCCCATATTTGAACTCTTAAGGCGCTTGATGTCTGTACAGAAATATCTT GGGTTGCATGGGAGCCTGGTTTGTCATCAACTATAATAACATTATTATTCACAATCCTTGTTCAGTCAGAACTTGAAGAT GAACACATTGCTATATTGAAACTTAATCCTGAAGTGGAAATATGATAATGGTGAGTTTTCTATATCTGTCCAGATTTTTT GGTTCATGCATACATTCAAGATGAATACACGTGACCGGGGAAGTATAATATTCTCTATTAAAACTTTAACAATTTTTTTT TGTATTTTCCTCTGATTTCTAAGTCAATCTATGCCAATTGAGTTCATATTTCATAAAAAATTGTAAATTTCAGGATACTG CTTTTGCATGCTCTCTCTTGATGTATTTGCCTAATTGTGATGAACTCAGGTCTTTACTTGTTGGTTTGTTGACTATTGGA CAATCATACCATCTTCCAGAAACTTGAATAACCTTACATAGTTTTGACACAACATTATCTTCTGTTGCAACATTTTTTTT CCTGCTTTTTTTTTCTATTGCTCAAATTCATTAAATAACCCAAGAACTTATGCTTGTTTGATGCTCTCTTTAATGTCATC ACGCTGAAGTTTATTTATTAGTATTAGTTACTGATGCAGATGATGCTATCACCAGAACTATATCCTCTCCGTTTGAAGAG ATTTTGTTTCTACTTCCGGTTGTCAGTCTCATGTGATCTGCTTCCAAATCTGTAAAAGGACTGGCTACCGATTTTCTTTT TCACTTAGAGAAGCTTTTTCAAGACCAAGACATAAACCAGTCATCGAGGGTTAAGCAACTTATTGCAGCGCTGAGGTGGA TGGTCGAGGAGATGCAGTCCATAAGGATAAGGTAAATCTTGAGCATAAATGTAATCATTGCATGATGCTTGATTTAATTT GGATCGGGATGGATTGTTCACGAGAAGAAGTTCTAAGCTTTTCTTTACGGAAAATTATATCTGGTGAAAACGTATATCAT GTTAGTGCCTAGATAATGAGCACCTCAAAATGTCAGTTTTCTTTGCGTTTAAGGAAGTCTTTTAATAAACCATGGATTCT CAGCCCATGCCTCTTAAATTTGTATGTGTTATTTCCAGCTAAAGTGGCAATAAGCAGGGTCTGAAGAACACTGATTAGAA GTGCAGCACTAACTTATATTCAAAAATATTTAAAGAAGTTTAGATTCTAACTATAAAACAATAATTTGTGTGGCATATGA CGATTTTTAGCATTTATACCTACATTTGATGTGTAAAAACCTTTTCCATTGCAGGTGCCCTAGGTACTAGTTGTGTGAAG ATCCAATGGTCATTCCTATTTCCCTGATATACATCTGTATATATATTGCAATCCCTATTTCCTTTGTATACATCTGTAGG TAAGTTCTAATAACTTCTGTAGTCAAGTAAGAGTGGCACTTCCACAATTAGGATGCAGCTCAGTGGTGGAGGAGGGTTTA GTTTACGGTAGAATCCGTTGTCAATTGTAAATAAATGAAGTAGATGTTTTTTTTTGTTAGGTTTGAGAGATCCATGGTTT GGATGGGTGGTTGTGAAAACTGTCTGGATGAAATGTTTTAC
CDS sequence (LotjaGi2g1v0242000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTCGTCGACCTTCAATCTCTGCTACCACTGTGCCCATTCTCTCAGAATCATTCTCCAACACAACCTTCTCACAGAA AAAATCACCTTCCTTTTCATCTTCTTCTTCTTCTTCCCTAGTCACTATACATGATTCTCAATCCAAACCCATTTCAAGTC CCTTTTACAATCTCCTCCCACCTACCCAGAACCCCCATAACATAGTAAACCTCATTTCTTCACTCCTCAAACAGAAAAGT TTCCATCTTTCCCTTTTTCAAAATGACATCAAAGGCATTCTCCCTCACATGGGTACCCATGAAATTTCTAGGGTTTTGCT CAGGTGCCAATCTGATCACTCTTCAGCTCTCACATTTTTCAATTGGGTTAAGAATGATTTGGGTGTTAAACCAGCTGTGC AGAACTATTGTGTAATTGTTCACATACTTGCTTGGTCTAGAGTGTTCTCTAAGGCCATGAAGTTGTTGTGTGAATTGATA CACCTGGTTGAGGTTGAGGGTGTTTTTTCAAATGTGGATATTTATCAGAATTTGGTTTTGAGTACTGAGGATTGTAATTG GAATCCTGCAATATTTGATATGCTTATCAAGGCTTATGTGAAGGTTGGTATGGTTGAGAAGGGTTTGGTAACTTTTAGGA AGAATATTGAGGCTTGTTTTATTCCCAATGTGGTAGCTTGCAATTGTTTGCTGAGTGGTTTGTCTAAGTTTAATTATATT GATCAGTGCTGGGAAGTTTATGAAGAGATGGGAAGACTTGGAATTCACAGGAATGCTTTTACTTTCAACATTTTAACCAA TGTTTTGTGTAAATACGGAGATACGGATAAGGTTAATGGATTCTTGGAGAAAATGGAGGAAGAAGGATTTGAACCTGACT TGGTGACATATAACACACTCATTAATAGCTATTGTAAGAAAAGAAGGTTGGAGGATGCGTTTTATTTATACAAGATCATG TACATTAGAGGTGTGACGCCTAATTTGATTTCACACTCAGCCTTGATGAATGGTCTTTGTGAAGAAGGGAAAATCAAGGA GGCTCATCAACTTTTTAACCAGATGGTTCAGAGAGGGATAGATCCAGATGTTGTGTCGTATAATACTCTTATATCTGGTT ATTGCAGAGAAGGTAAGGTGCAGATGTCTAGATCGCTATTGCGTGAAATGATAGGAAGTGGAATTCGTCCTGACAGTGTC ACTTGTAGGCTTATTGTTCAAGGATATGCAAGGGATGGAAAGCTACTCTCAGCCTTGAATTTGGTTGTGGAGCTTCAGAA ATTTGGAATTAAGATTCCTGAAAATTTATATGATTATCTCATAGTTGCATTGTGCAAAGAAGGTCGACCATTTGCTGCTA GAAGTTTTCTGATAAGGATATCTCAGGATGGCTATGTGCCTGAAATCAGTACTTTCAATAGCCTGGTTGAGTCTCTATGT AAATTCAATAATGTGGAAGAGGCACTAATTGTGAAATCTGAGATGCTAAAGAATAGTATGAGGCTGAGTCTCACTGCCTA TAGAGCTATTATAAGCGGCTTGTGTAGAGTAAACAGGACTCTGGAAGCTGAAGCCTTGTTGGAGGAAATGGTTAGCTTAG GTATTCTACCTGATCTAGAAACTAAGAGGGCATTAATAAATGGATATTGTAAAGAAAATAATGTTGATAGAGCTGAGTCA TTATTGAAATTCTTTGCCAAGGAGTTTCAACTTTACGACACTGAAAGCTACAATTCAGTTGTTAAAGTCTTTTGTGAGGT TGGTGATGTGGCAGAGCTGATGGAGCTTCAGGATAGGCTACTCAAGGTGGGGTATGTTCCAAATAGTTTAACATGCAAGT ACGTGATTTGCGGATTGCAGAAAGTTATGGAACTAGATGATGAGATATTGAGACACAACATGCTAGAACCTTGA
Protein sequence (LotjaGi2g1v0242000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIRRPSISATTVPILSESFSNTTFSQKKSPSFSSSSSSSLVTIHDSQSKPISSPFYNLLPPTQNPHNIVNLISSLLKQKS FHLSLFQNDIKGILPHMGTHEISRVLLRCQSDHSSALTFFNWVKNDLGVKPAVQNYCVIVHILAWSRVFSKAMKLLCELI HLVEVEGVFSNVDIYQNLVLSTEDCNWNPAIFDMLIKAYVKVGMVEKGLVTFRKNIEACFIPNVVACNCLLSGLSKFNYI DQCWEVYEEMGRLGIHRNAFTFNILTNVLCKYGDTDKVNGFLEKMEEEGFEPDLVTYNTLINSYCKKRRLEDAFYLYKIM YIRGVTPNLISHSALMNGLCEEGKIKEAHQLFNQMVQRGIDPDVVSYNTLISGYCREGKVQMSRSLLREMIGSGIRPDSV TCRLIVQGYARDGKLLSALNLVVELQKFGIKIPENLYDYLIVALCKEGRPFAARSFLIRISQDGYVPEISTFNSLVESLC KFNNVEEALIVKSEMLKNSMRLSLTAYRAIISGLCRVNRTLEAEALLEEMVSLGILPDLETKRALINGYCKENNVDRAES LLKFFAKEFQLYDTESYNSVVKVFCEVGDVAELMELQDRLLKVGYVPNSLTCKYVICGLQKVMELDDEILRHNMLEP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 20 | 20 | - | – | |
| Phobius | 1 | 6 | 6 | - | – | |
| Phobius | 7 | 15 | 9 | - | – | |
| Phobius | 16 | 20 | 5 | - | – | |
| Phobius | 21 | 637 | 617 | - | – | |
| PANTHER | 26 | 457 | 432 | 4.5E-99 | – | |
| Gene3D | 96 | 283 | 188 | 7.8E-26 | ||
| ProSiteProfiles | 188 | 222 | 35 | 8.221 | ||
| Pfam | 193 | 213 | 21 | 1.0 | ||
| Pfam | 222 | 271 | 50 | 6.6E-13 | ||
| ProSiteProfiles | 223 | 257 | 35 | 9.778 | ||
| TIGRFAM | 225 | 258 | 34 | 9.5E-5 | ||
| ProSiteProfiles | 258 | 292 | 35 | 11.575 | ||
| TIGRFAM | 260 | 293 | 34 | 6.1E-7 | ||
| Gene3D | 284 | 356 | 73 | 2.2E-23 | ||
| Pfam | 292 | 340 | 49 | 1.4E-15 | ||
| ProSiteProfiles | 293 | 327 | 35 | 13.121 | ||
| TIGRFAM | 295 | 328 | 34 | 4.4E-10 | ||
| ProSiteProfiles | 328 | 362 | 35 | 12.945 | ||
| TIGRFAM | 331 | 364 | 34 | 1.8E-9 | ||
| Gene3D | 357 | 426 | 70 | 5.2E-18 | ||
| Pfam | 362 | 411 | 50 | 8.8E-14 | ||
| ProSiteProfiles | 363 | 397 | 35 | 14.041 | ||
| TIGRFAM | 365 | 399 | 35 | 4.4E-10 | ||
| ProSiteProfiles | 398 | 432 | 35 | 9.229 | ||
| PANTHER | 425 | 626 | 202 | 4.5E-99 | – | |
| Gene3D | 427 | 497 | 71 | 3.1E-10 | ||
| ProSiteProfiles | 433 | 467 | 35 | 8.243 | ||
| Pfam | 463 | 495 | 33 | 5.5E-6 | ||
| ProSiteProfiles | 468 | 502 | 35 | 9.69 | ||
| TIGRFAM | 471 | 501 | 31 | 0.0026 | ||
| Gene3D | 498 | 567 | 70 | 1.2E-12 | ||
| ProSiteProfiles | 503 | 537 | 35 | 11.159 | ||
| Pfam | 506 | 551 | 46 | 2.0E-8 | ||
| TIGRFAM | 506 | 538 | 33 | 5.0E-7 | ||
| ProSiteProfiles | 538 | 568 | 31 | 7.761 | ||
| Gene3D | 568 | 634 | 67 | 1.5E-6 | ||
| ProSiteProfiles | 573 | 607 | 35 | 10.622 | ||
| Pfam | 576 | 604 | 29 | 0.96 | ||
| TIGRFAM | 576 | 608 | 33 | 0.0011 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0242000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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