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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0242900 |
| Transcript ID | LotjaGi2g1v0242900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Germin-like protein subfamily 1 member 1; TAIR: AT3G05950.1 RmlC-like cupins superfamily protein; Swiss-Prot: sp|Q6K5Q0|GL21_ORYSJ Putative germin-like protein 2-1; TrEMBL-Plants: tr|I3TAN5|I3TAN5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0242900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:70600704..70602011) extracted from Lotus japonicus Gifu genome v1.2.
CATCCCTCATAAACAAACGTACACCAGCAATTATACAACAAAAGAATTGCTTAAACATAACAATATGAAGGCTGGTTTCT TGATCCTTGCTGCCTTATTGGCTTTAACATCTTCTTCCTCTGCCTTTGATCCTAGCCCTCTGCAGGACTTTTGTGTGGCT ATCAATGACTCCAAAAGCGGTGGTACGTATAATGTACTTTTAGTATGTTTTGTTCGGTTTCTCTTTTTTCAAAATCAATT TTGAACCAAAAGCTACTCACTAAAGCTTCTCTCCACAATTAATTCTTGATTTAGAATAAATTGTAGAACAATTTCTAAAC GTGCATTTATCACTCAATTTATCTTTACATTACAACATATATATGTCCATATTACATGCACATGTGTTGGGCTGAGAGAT GCCTAAAATATTGGGCTAAGAGAAAATCACAATAGTGAATTTGAACACAACATTTTTCACTCAAAACTTTAAGACATTAA GTGTATGAATCATTTCACTGATATATATATTGTTCAACACTTTACTTTTTTCCAATGTAAGACTTTCTTACTCACTTTGC ATCCCAACAATATGAAAAGTACATGATTTGTCTTATAACTTTGATTGCAGTGTTTGTGAATGGAATGTTTTGCAAGGATC CAACACGTGCTACTCCAAATGATTTTTTCTTCTCAGTGAAAGAGGGAAACACATCCAATCCACTTGGTTCCAAAGTGACT CCTGTTGCTGTCACTGAGATACCTGGACTAAACACTCTTGGCATCTCCCTTGCTCGCATTGATTTTGCACGTAAAGGCTT AAATCCTCCACACTTTCACCCTAGAGGCACTGAGATCCTAATAGTGTTGGAAGGCACTCTGTATGTTGGTTTTGTCACAT CCAACCCAGAAAACCGTCTCATCACAAAAGTGCTTAATAAAGGAGATGTGTTTGTGTTCCCAATTGGTCTCATTCACTTC CAATTAAATGTTGGTTATGGAAATGCTGCTGCTATTGCTGGACTTAGCAGCCAGAACCCAGGAGTTACAACAATTGCTAA TGCTGTGTTTGGCTCTGATCCAAGCATCTCTTCACAAGTTCTCACCAAGGCTTTCCAAGTAGACAAGAATGTAGTGGATT ATCTTCAAAAGCAATTCTGGTGGGATAACAATTAGCATTTATAGCAAGTTGTCATGTTGTGTGCTTGAATAATCACTAAA TTTATCTGAATTGTTAGCTTTGTTGTTGCACTTACCACCATATTTGAATATTCACTAATGTTGGATGTACCTTATAATCA TACTTGAATAAAAAAGTTTATTTCGCTA
CDS sequence (LotjaGi2g1v0242900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGGCTGGTTTCTTGATCCTTGCTGCCTTATTGGCTTTAACATCTTCTTCCTCTGCCTTTGATCCTAGCCCTCTGCA GGACTTTTGTGTGGCTATCAATGACTCCAAAAGCGGTGTGTTTGTGAATGGAATGTTTTGCAAGGATCCAACACGTGCTA CTCCAAATGATTTTTTCTTCTCAGTGAAAGAGGGAAACACATCCAATCCACTTGGTTCCAAAGTGACTCCTGTTGCTGTC ACTGAGATACCTGGACTAAACACTCTTGGCATCTCCCTTGCTCGCATTGATTTTGCACGTAAAGGCTTAAATCCTCCACA CTTTCACCCTAGAGGCACTGAGATCCTAATAGTGTTGGAAGGCACTCTGTATGTTGGTTTTGTCACATCCAACCCAGAAA ACCGTCTCATCACAAAAGTGCTTAATAAAGGAGATGTGTTTGTGTTCCCAATTGGTCTCATTCACTTCCAATTAAATGTT GGTTATGGAAATGCTGCTGCTATTGCTGGACTTAGCAGCCAGAACCCAGGAGTTACAACAATTGCTAATGCTGTGTTTGG CTCTGATCCAAGCATCTCTTCACAAGTTCTCACCAAGGCTTTCCAAGTAGACAAGAATGTAGTGGATTATCTTCAAAAGC AATTCTGGTGGGATAACAATTAG
Protein sequence (LotjaGi2g1v0242900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKAGFLILAALLALTSSSSAFDPSPLQDFCVAINDSKSGVFVNGMFCKDPTRATPNDFFFSVKEGNTSNPLGSKVTPVAV TEIPGLNTLGISLARIDFARKGLNPPHFHPRGTEILIVLEGTLYVGFVTSNPENRLITKVLNKGDVFVFPIGLIHFQLNV GYGNAAAIAGLSSQNPGVTTIANAVFGSDPSISSQVLTKAFQVDKNVVDYLQKQFWWDNN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 3 | 3 | - | – | |
| SignalP_EUK | 1 | 20 | 20 | - | – | |
| Phobius | 1 | 20 | 20 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 20 | 20 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 20 | 20 | - | – | |
| Phobius | 4 | 15 | 12 | - | – | |
| PANTHER | 5 | 215 | 211 | 2.0E-108 | – | |
| PANTHER | 5 | 215 | 211 | 2.0E-108 | – | |
| Phobius | 16 | 20 | 5 | - | – | |
| Phobius | 21 | 220 | 200 | - | – | |
| Gene3D | 21 | 217 | 197 | 2.5E-87 | ||
| SUPERFAMILY | 22 | 215 | 194 | 8.28E-43 | ||
| SMART | 60 | 209 | 150 | 5.7E-33 | ||
| Pfam | 64 | 208 | 145 | 1.5E-46 | ||
| ProSitePatterns | 102 | 115 | 14 | - | ||
| PRINTS | 107 | 127 | 21 | 2.3E-27 | ||
| PRINTS | 139 | 159 | 21 | 2.3E-27 | ||
| PRINTS | 172 | 187 | 16 | 2.3E-27 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Manganese ion binding | Interacting selectively and non-covalently with manganese (Mn) ions. | ||
| Molecular function | Nutrient reservoir activity | Functions in the storage of nutritious substrates. |
Expression pattern of LotjaGi2g1v0242900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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