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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0246500 |
| Transcript ID | LotjaGi2g1v0246500.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein KINESIN LIGHT CHAIN-RELATED 3; TAIR: AT3G27960.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9LII8|KLCR2_ARATH Protein KINESIN LIGHT CHAIN-RELATED 2; TrEMBL-Plants: tr|A0A151R9K3|A0A151R9K3_CAJCA Nephrocystin-3; Found in the gene: LotjaGi2g1v0246500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:71213049..71215386) extracted from Lotus japonicus Gifu genome v1.2.
ATGCCTGAGAGAGCTATGGATGAGTTGAACATGAATATTGCAGGAGAGGGGCCTAGTGGGAGTTATACACCCCATAAGGA TAACTTCAATCAACAAGCATCTCCAAGGAGTACACTGAGTCCAAGAAGCATTCAGAGTAGTGACTCAATTGATTTGGCTA TTGATGGTGTGGTGGATACCTCAATTGAGCAATTGTATTACAATGTGTGTGAAATGCGAAGCTCTGATCAATCACCCTCC AGGGCTAGCTTTTACTCATATGGTGAAGAGTCAAGAATTGATTCAGAATTGGGCCATCTTGTTGGAGGTATCTTGGAGAT TACAAAGGAGGTGGTTACAGAGAATAAAGAAGAGTCCAACGGCAATGCTGCTGAGAAAGATATTGTGTCATGTGGCAAGG AAGCTACAAAGAAGGATAATAACCAATCACATTCACCAAGCTCAAGGATCATTGAAGGATCAGCCAAGTCAACCCCCAAA AGCAGAAATTTGCGTGAGAGACCATCAACTGACAAGAGGAGTGAAAGGAGCAGCAGAAAAGGAAGTCTTTACCCTATGAG GAAGCATAGGAGCCTTGCTTTGAGGGGGATCATTGAGGAACGTATTGCCACTGGGTTAGATAATCCAGATTTGGGACCAT TTTTGCTCAAGCAAACAAGAGATATGATCTCTTCAGGTGAGAATCCACAGAAAGCTCTTGATTTGGCTCTTAGAGCTCTG AAATCATTTGAGATGTGTGCAGATGGGAAACCCAGTTTAGAATTGGTCATGTGTCTGCATGTCTTGGCAACAATTTACTG TAATTTAGGACAATATAATGAGGCTATTCCCATTCTTGAGCGCTCCATTGATATTCCTGTGTTAGAGGATGGCCAAGATC ATGCATTGGCCAAGTTTGCAGGATGCATGCAGTTGGGTGATACTTATGCAATGATGGGGAACATTGAGAATTCTATACTG TTTTACACAGCAGGACTTGAGATTCAAGGGCAGGTCTTGGGGGAAACTGACCCGAGATTTGGCGAGACGTGTCGGTATGT GGCTGAGGCTCATGTTCAGGCTCTGCAATTTGACGAGGCTGAGAGGCTGTGTCAGATGGCTCTTGAAATTCACAGGGGAA ATGGAAATGGATCTTCTGCTTCTGTTGAAGAATCTGCAGATAGGAGACTAATGGGGCTTATCTATGACTCAAAGGGTGAT TATGAAGCTGCATTAGAGCACTACGTTCTGGCAAGCATGGCCATGTCAGCAAATGGCCAAGAACAAGATGTGGCTTCAGT TGATTCCAGCATAGGTGATGCCTATCTAGCATTGGCACGCTACGATGAGGCGGTGTTCTCTTATCAGAAAGCACTCACTG TGTTCAAATCAACCAAAGGAGAGAACCATCCAAATGTTGCTTCAGTCTATGTAAGGTTAGCTGATTTGTACAACAAAATA GGAAAATTCAAGGATTCAAAATCCTACTGTGAGAATGCACTCAGAATTTTCGGAAAGAGCAAACCAGGAATCCCCCCAGA AGAGATTGCTAATGGTTTAATAGATGTTGCTGCTATCTATCAATCCATGAATGATTTGGAGAAGGGGTTGAAGTTACTCA AAAAGGCCTTGAAGATATATGGCCATGCTCCTGGTCAACAAAGTACTATTGCAGGGATTGAGGCACAAATGGGGGTTATG TATTACATGCTAGGGAACTATTCTGATTCTTACAACATCTTCAAAAGCGCCGTTGCCAAGTTTCGTGCCAGTGGAGAGAA AAAATCTGCTTTGTTTGGGATTGCTTTGAACCAAATGGGTCTTGCATGTGTGCAACGTTATGCTATAAATGAAGCAGCAG ATTTGTTTGAAGAGGCCAGGACTATATTGGAGAAAGAGTATGGTCAATATCACCCAGACACCTTAGGGGTTTATAGCAAT CTAGCAGGAACCTATGATGCAATGGGAAGGTAATATTTTCATTGATGACTAACTCTCCGTAGTCCTTATTGTTCTGGCTT ATAATTATGGTATTTATGAGTGCTACTTTCTTCATCTCTTTTGTTTACAACTTTATGCAGTATAAGAATACTTGGAAATT TCAGATTTTAATTGCTGATATTTCTTGTGATAATTTTGCAGAGTGGATGATGCCATTGAGATTTTGGAATTTGTGGTTGG AATGAGAGAAGAGAAGCTCGGAACAGCGAACCCCGATGTGGATGACGAGAAACGTAGATTGGCAGAATTGCTGAAAGAAG CAGGCAGGGGTCGGAATAGGAAATCGAAAAGATCATTGGAAACTCTCCTTGATGCCAATTCTCGGCTTATAAAAAACAAT AGCATTAAGGTCCTATAA
CDS sequence (LotjaGi2g1v0246500.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCTGAGAGAGCTATGGATGAGTTGAACATGAATATTGCAGGAGAGGGGCCTAGTGGGAGTTATACACCCCATAAGGA TAACTTCAATCAACAAGCATCTCCAAGGAGTACACTGAGTCCAAGAAGCATTCAGAGTAGTGACTCAATTGATTTGGCTA TTGATGGTGTGGTGGATACCTCAATTGAGCAATTGTATTACAATGTGTGTGAAATGCGAAGCTCTGATCAATCACCCTCC AGGGCTAGCTTTTACTCATATGGTGAAGAGTCAAGAATTGATTCAGAATTGGGCCATCTTGTTGGAGGTATCTTGGAGAT TACAAAGGAGGTGGTTACAGAGAATAAAGAAGAGTCCAACGGCAATGCTGCTGAGAAAGATATTGTGTCATGTGGATCAG CCAAGTCAACCCCCAAAAGCAGAAATTTGCGTGAGAGACCATCAACTGACAAGAGGAGTGAAAGGAGCAGCAGAAAAGGA AGTCTTTACCCTATGAGGAAGCATAGGAGCCTTGCTTTGAGGGGGATCATTGAGGAACGTATTGCCACTGGGTTAGATAA TCCAGATTTGGGACCATTTTTGCTCAAGCAAACAAGAGATATGATCTCTTCAGGTGAGAATCCACAGAAAGCTCTTGATT TGGCTCTTAGAGCTCTGAAATCATTTGAGATGTGTGCAGATGGGAAACCCAGTTTAGAATTGGTCATGTGTCTGCATGTC TTGGCAACAATTTACTGTAATTTAGGACAATATAATGAGGCTATTCCCATTCTTGAGCGCTCCATTGATATTCCTGTGTT AGAGGATGGCCAAGATCATGCATTGGCCAAGTTTGCAGGATGCATGCAGTTGGGTGATACTTATGCAATGATGGGGAACA TTGAGAATTCTATACTGTTTTACACAGCAGGACTTGAGATTCAAGGGCAGGTCTTGGGGGAAACTGACCCGAGATTTGGC GAGACGTGTCGGTATGTGGCTGAGGCTCATGTTCAGGCTCTGCAATTTGACGAGGCTGAGAGGCTGTGTCAGATGGCTCT TGAAATTCACAGGGGAAATGGAAATGGATCTTCTGCTTCTGTTGAAGAATCTGCAGATAGGAGACTAATGGGGCTTATCT ATGACTCAAAGGGTGATTATGAAGCTGCATTAGAGCACTACGTTCTGGCAAGCATGGCCATGTCAGCAAATGGCCAAGAA CAAGATGTGGCTTCAGTTGATTCCAGCATAGGTGATGCCTATCTAGCATTGGCACGCTACGATGAGGCGGTGTTCTCTTA TCAGAAAGCACTCACTGTGTTCAAATCAACCAAAGGAGAGAACCATCCAAATGTTGCTTCAGTCTATGTAAGGTTAGCTG ATTTGTACAACAAAATAGGAAAATTCAAGGATTCAAAATCCTACTGTGAGAATGCACTCAGAATTTTCGGAAAGAGCAAA CCAGGAATCCCCCCAGAAGAGATTGCTAATGGTTTAATAGATGTTGCTGCTATCTATCAATCCATGAATGATTTGGAGAA GGGGTTGAAGTTACTCAAAAAGGCCTTGAAGATATATGGCCATGCTCCTGGTCAACAAAGTACTATTGCAGGGATTGAGG CACAAATGGGGGTTATGTATTACATGCTAGGGAACTATTCTGATTCTTACAACATCTTCAAAAGCGCCGTTGCCAAGTTT CGTGCCAGTGGAGAGAAAAAATCTGCTTTGTTTGGGATTGCTTTGAACCAAATGGGTCTTGCATGTGTGCAACGTTATGC TATAAATGAAGCAGCAGATTTGTTTGAAGAGGCCAGGACTATATTGGAGAAAGAGTATGGTCAATATCACCCAGACACCT TAGGGGTTTATAGCAATCTAGCAGGAACCTATGATGCAATGGGAAGAGTGGATGATGCCATTGAGATTTTGGAATTTGTG GTTGGAATGAGAGAAGAGAAGCTCGGAACAGCGAACCCCGATGTGGATGACGAGAAACGTAGATTGGCAGAATTGCTGAA AGAAGCAGGCAGGGGTCGGAATAGGAAATCGAAAAGATCATTGGAAACTCTCCTTGATGCCAATTCTCGGCTTATAAAAA ACAATAGCATTAAGGTCCTATAA
Protein sequence (LotjaGi2g1v0246500.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPERAMDELNMNIAGEGPSGSYTPHKDNFNQQASPRSTLSPRSIQSSDSIDLAIDGVVDTSIEQLYYNVCEMRSSDQSPS RASFYSYGEESRIDSELGHLVGGILEITKEVVTENKEESNGNAAEKDIVSCGSAKSTPKSRNLRERPSTDKRSERSSRKG SLYPMRKHRSLALRGIIEERIATGLDNPDLGPFLLKQTRDMISSGENPQKALDLALRALKSFEMCADGKPSLELVMCLHV LATIYCNLGQYNEAIPILERSIDIPVLEDGQDHALAKFAGCMQLGDTYAMMGNIENSILFYTAGLEIQGQVLGETDPRFG ETCRYVAEAHVQALQFDEAERLCQMALEIHRGNGNGSSASVEESADRRLMGLIYDSKGDYEAALEHYVLASMAMSANGQE QDVASVDSSIGDAYLALARYDEAVFSYQKALTVFKSTKGENHPNVASVYVRLADLYNKIGKFKDSKSYCENALRIFGKSK PGIPPEEIANGLIDVAAIYQSMNDLEKGLKLLKKALKIYGHAPGQQSTIAGIEAQMGVMYYMLGNYSDSYNIFKSAVAKF RASGEKKSALFGIALNQMGLACVQRYAINEAADLFEEARTILEKEYGQYHPDTLGVYSNLAGTYDAMGRVDDAIEILEFV VGMREEKLGTANPDVDDEKRRLAELLKEAGRGRNRKSKRSLETLLDANSRLIKNNSIKVL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 44 | 44 | - | – | |
| PANTHER | 1 | 699 | 699 | 0.0 | – | |
| PANTHER | 1 | 699 | 699 | 0.0 | – | |
| MobiDBLite | 23 | 44 | 22 | - | – | |
| MobiDBLite | 114 | 162 | 49 | - | – | |
| MobiDBLite | 139 | 161 | 23 | - | – | |
| Gene3D | 202 | 364 | 163 | 3.7E-20 | ||
| SUPERFAMILY | 209 | 649 | 441 | 8.28E-20 | ||
| Pfam | 235 | 264 | 30 | 1.8E-4 | – | |
| SMART | 235 | 268 | 34 | 34.0 | ||
| ProSiteProfiles | 235 | 268 | 34 | 6.97 | ||
| ProSiteProfiles | 235 | 268 | 34 | 6.107 | ||
| SMART | 278 | 311 | 34 | 9.2 | ||
| SMART | 320 | 353 | 34 | 14.0 | ||
| ProSiteProfiles | 364 | 397 | 34 | 5.9 | ||
| SMART | 364 | 397 | 34 | 37.0 | ||
| ProSiteProfiles | 364 | 647 | 284 | 16.873 | ||
| Gene3D | 367 | 533 | 167 | 3.8E-29 | ||
| Pfam | 402 | 476 | 75 | 1.8E-11 | – | |
| ProSiteProfiles | 404 | 437 | 34 | 9.175 | ||
| SMART | 404 | 437 | 34 | 1.5 | ||
| SMART | 446 | 479 | 34 | 0.023 | ||
| ProSiteProfiles | 446 | 479 | 34 | 6.992 | ||
| ProSiteProfiles | 489 | 522 | 34 | 7.375 | ||
| SMART | 489 | 522 | 34 | 11.0 | ||
| SMART | 530 | 563 | 34 | 28.0 | ||
| ProSiteProfiles | 530 | 563 | 34 | 6.372 | ||
| Gene3D | 534 | 700 | 167 | 1.6E-23 | ||
| SMART | 572 | 605 | 34 | 52.0 | ||
| ProSiteProfiles | 572 | 605 | 34 | 5.281 | ||
| Pfam | 573 | 638 | 66 | 1.4E-8 | – | |
| SMART | 614 | 647 | 34 | 74.0 | ||
| ProSiteProfiles | 614 | 647 | 34 | 6.549 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0246500.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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