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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0252700 |
| Transcript ID | LotjaGi2g1v0252700.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | General negative regulator of transcription subunit 4; TAIR: AT3G48070.1 RING/U-box superfamily protein; Swiss-Prot: sp|P34909|NOT4_YEAST General negative regulator of transcription subunit 4; TrEMBL-Plants: tr|I3S4I8|I3S4I8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0252700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:71824167..71827328) extracted from Lotus japonicus Gifu genome v1.2.
AGGGTGTGTTTTGATGAAAACAGAGACAATAGAATAGCAAGAGAAATCAAACCAAACCTGCATTTTGTAACATCCACTCC CTCCCTATCCTCTCTCTGTTTCCTCTTTCACATTCATTCTCAATCGTTTCAATGGCTTCTGGTTTCATCTCTGATCCTCC ACTCTCCAAGAAGAAGAGGGTAACCATCTATCTCTCTATTCTCTTTTGCTTCTTCAATCATGTTTTCGTTTTTCTTTTCA AACCATTTTGTTTTCTGATACCCATTGAGCTAAAGATGCGATCTTTATTCAATCCATATGCAATTGCATTGCATTTTCAT TTGTTGGGTATCAAAGGGTACCAGTTTCCTTCTTTGGATTTTTCTTTTTCTCTAGTTTTAGGAATTTTCATTTTTTTTTT CATGGTTTTGTGATTTTCATTTTCCAATTTTGTTGAATTATGGTGCCATGCATATTCAGATAAATTGTATCAAAGGGTAG CAAATTTTCCTTCAATTTTTACTGTTTTGAAATTTTCATTTTTTGTTATGGTTATGTGATTTTTTTCGTTTTTATTTGAT TATGGCTGATGGCATTGTGAATGTTTCAGACAAATGGCTCGGCGAAACTGAAGCAAATCAAGCTTGATGTTAGGCGTGAA CAATGGCTCTCTCGAGGTAGTTTTATAATCTTCATCTTCACCTGGAATTATCTCACACATTGATGGAGTTTTTCTGTTCT TTGTTTAATAATCAATGATAAAGTTTTTCTTTTCTTTTTTTTTGACCAAATCATTAATGTTGAGTGTCTTAATACCATTT AAGTATTTAATTTGGAGTTTCCTTTTATTTGTTAATTCTCTAATGGTCATCCATTGTTCCTTTGGTGTGATTGCTGTCAT TATTTTTTGGACTATTACTTGATTTGATTCCTTGCACTGTCCACCTGCAAAATTATGATGCCTTAAATAGAAATCAATAC ACATTACATCTTCCCTTTGTGAACTTACAAATTGTAATGATGCAACCTTCAACCAAGTGCATATTTGGATATACAGTGGA AAACCACATTAAGCCAAAATCGCGGTGGAAAGAAGCAACTTCCCTTAGCTTTTGGGACTGTCCACTGTAATTTTGGCTTC ACCATGATTGTCAACCGTGTATCCAAATATGCACTAAGATGATCTTCAATGATGGGCATAATTAGTGTTGGTAGGGAAGG GCTTCTCATCTTATCATGTTTTGAAGCATCATTTGATCATTGTGTTATCACTGATTCCAATTTTGTGTGTTTCACTATAG ATAAATACTAAATAACATTCAAAGTGAAGTAAAGCTATATTTCGTTTTAAATGGTAAGATAAGGCCAGTTACCTTTTATC ATGGGAATGTGATAAATATTCATCTTTTCTTCTTTTTTTAACTCGAGCATATTATGGACATTATTTTGAATTTTTCCAAA ATCCTTTTAAAGTTGGTTAATATTATTTTTTTACTTATTTGTTCATGGTTGATTCCACTTGTGTTTCAGTCAAAAAAGGA TGCAATGTTGACTCAAATGGAAGGATGGATAATTGTCCATCATCTAAGCACACTGCCAGTGAGGAGAATCGATCATCGTG CAAGGAAATGACGAGGAAAGGAGAGGATATTGAAGGTACTTGCATCCAGGACAGCGATTCGAGATCCACGATAAACAGCC CTGATCGAAGTACTTACAGTCATGATGAGTCGTCAGGGAAGGATTTCTCTGGGAGCAGCAGCAACAGCATTAGTACTTCT TGCTCTGGGAATGACAGTGAGGAGGAAGATGATGATGGATGCCTTGATGACTGGGAGGCGGTCGCTGATGCTTTATACGC AAATGATAAGTCGCATTCTGTGGTTTCAGAGTCTCCTGCAGAACACGAGGCGGAGTGCCGCTATACTGTTCTGGAGGATG ATAAGAATCCTAGAGTGGATTTCTCAAAAGCAGATTTCAAGTCAGAAGTTCCTGAGTCAAAACCGAATCGTCGAGCATGG AAGCCTGATGATACTCTTCGTCCTAGGTGTTTGCCCAACCTCTCAAAGCAACGTAATTCTCCATTAAACTCAAACTGGCG CGGTAGCCGCAAAACTGTACCTTGGGCATGGCAAACAATCATATCCCAACCTTCTCAATGTCCTATCTGTTATGAGGATT TAGACGTGACGGACTCCAGCTTTCTTCCTTGCTCATGTGGATTTCATTTGTGCCTTTTTTGTCACAAAAAGATCCTCGAG GCAGATGCGCGATGTCCGAGCTGCAGAAAACTATATGATCATGTAGATGGGAACGTTGGACTCAATATAGGAGCCAAAGC TTTCCGTATCACGCAATCATGCCGAACGGGTACGGGGTGGTAGCTCCTAGACGGCTGAATGTGTTTTGGGAAACATCATG TAAATGTTTTCTCTTTCTCTCATCACTTAATCTATAGTCCCCTTCCATTTTCCTCTTTTTAAATTCAAAAACAATCTTTG ATAAGTTTGATTTGCATTACCATGCTTTTTGTCAAATGTTAATGCAGGAAACTGAACAATGTTTTTGTGAGGAGTACATC AAATAATTTGAAGATTGAAATTTGAAAATAAAATATCTTATTTAGTTGTAGAGGATGCTCTACTCCCTTAAGCTATATGA TCTTTGACTCATGAAATATCGTATGCTTTCTAGACCTTATTCCTTGATTTAATAATGAGATTTCTGAGTATGTATTGGGT AAGATGGAGCCCAACTGCATTTATTGATATGTTGATTTTGAATGTACTAGTGCGTGTTTAGAAAATCTTCTACAATTGAT TCTAAAGCTATAATCAATTTTGGGGAGAAGCTTCAATGAGTAACTTCTGGGTTTCAGAATTGATATTGAGGAAAGAGAAG CCGATCCAAACATGCTATTGGTTATTTGTGGCTGATTTTGAACCTCCAATCATGGAAGCTAGCACACTTTACATTAGCTG TTGTACCAGCTGTCCAGCTTGTATCCATGACTGATACTCATTATGATTAGTCCAGTGTGTATCTTACATTTTTGTAATTG AGTTTTTGTGCCAATGCAGGTTGAATATCATGTGACTTGGATAAATGATATACTCTTTTATTATTTCTGCAATAACTTGT GCTGAGTTTTGAAACATAGATTTCTTTATTTTTATTTTTACT
CDS sequence (LotjaGi2g1v0252700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCTGGTTTCATCTCTGATCCTCCACTCTCCAAGAAGAAGAGGACAAATGGCTCGGCGAAACTGAAGCAAATCAA GCTTGATGTTAGGCGTGAACAATGGCTCTCTCGAGTCAAAAAAGGATGCAATGTTGACTCAAATGGAAGGATGGATAATT GTCCATCATCTAAGCACACTGCCAGTGAGGAGAATCGATCATCGTGCAAGGAAATGACGAGGAAAGGAGAGGATATTGAA GGTACTTGCATCCAGGACAGCGATTCGAGATCCACGATAAACAGCCCTGATCGAAGTACTTACAGTCATGATGAGTCGTC AGGGAAGGATTTCTCTGGGAGCAGCAGCAACAGCATTAGTACTTCTTGCTCTGGGAATGACAGTGAGGAGGAAGATGATG ATGGATGCCTTGATGACTGGGAGGCGGTCGCTGATGCTTTATACGCAAATGATAAGTCGCATTCTGTGGTTTCAGAGTCT CCTGCAGAACACGAGGCGGAGTGCCGCTATACTGTTCTGGAGGATGATAAGAATCCTAGAGTGGATTTCTCAAAAGCAGA TTTCAAGTCAGAAGTTCCTGAGTCAAAACCGAATCGTCGAGCATGGAAGCCTGATGATACTCTTCGTCCTAGGTGTTTGC CCAACCTCTCAAAGCAACGTAATTCTCCATTAAACTCAAACTGGCGCGGTAGCCGCAAAACTGTACCTTGGGCATGGCAA ACAATCATATCCCAACCTTCTCAATGTCCTATCTGTTATGAGGATTTAGACGTGACGGACTCCAGCTTTCTTCCTTGCTC ATGTGGATTTCATTTGTGCCTTTTTTGTCACAAAAAGATCCTCGAGGCAGATGCGCGATGTCCGAGCTGCAGAAAACTAT ATGATCATGTAGATGGGAACGTTGGACTCAATATAGGAGCCAAAGCTTTCCGTATCACGCAATCATGCCGAACGGGTACG GGGTGGTAG
Protein sequence (LotjaGi2g1v0252700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASGFISDPPLSKKKRTNGSAKLKQIKLDVRREQWLSRVKKGCNVDSNGRMDNCPSSKHTASEENRSSCKEMTRKGEDIE GTCIQDSDSRSTINSPDRSTYSHDESSGKDFSGSSSNSISTSCSGNDSEEEDDDGCLDDWEAVADALYANDKSHSVVSES PAEHEAECRYTVLEDDKNPRVDFSKADFKSEVPESKPNRRAWKPDDTLRPRCLPNLSKQRNSPLNSNWRGSRKTVPWAWQ TIISQPSQCPICYEDLDVTDSSFLPCSCGFHLCLFCHKKILEADARCPSCRKLYDHVDGNVGLNIGAKAFRITQSCRTGT GW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 25 | 25 | - | – | |
| PANTHER | 12 | 317 | 306 | 5.5E-90 | ||
| PANTHER | 12 | 317 | 306 | 5.5E-90 | – | |
| MobiDBLite | 40 | 135 | 96 | - | – | |
| MobiDBLite | 57 | 84 | 28 | - | – | |
| MobiDBLite | 85 | 125 | 41 | - | – | |
| MobiDBLite | 194 | 230 | 37 | - | – | |
| MobiDBLite | 214 | 230 | 17 | - | – | |
| SUPERFAMILY | 241 | 298 | 58 | 1.45E-13 | – | |
| Gene3D | 241 | 302 | 62 | 2.7E-16 | ||
| Pfam | 249 | 295 | 47 | 5.9E-17 | – | |
| ProSiteProfiles | 249 | 291 | 43 | 9.76 | ||
| CDD | 249 | 292 | 44 | 1.25505E-17 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ubiquitin-protein transferase activity | Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. | ||
| Cellular component | CCR4-NOT complex | The evolutionarily conserved CCR4-NOT complex is involved in several aspects of mRNA metabolism, including repression and activation of mRNA initiation, control of mRNA elongation, and the deadenylation and subsequent degradation of mRNA. In Saccharomyces the CCR4-NOT complex comprises a core complex of 9 proteins (Ccr4p, Caf1p, Caf40p, Caf130p, Not1p, Not2p, Not3p, Not4p, and Not5p), Caf4p, Caf16p, and several less well characterized proteins. |
Expression pattern of LotjaGi2g1v0252700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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