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GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ubiquitin-protein transferase activity | Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. | ||
| Cellular component | CCR4-NOT complex | The evolutionarily conserved CCR4-NOT complex is involved in several aspects of mRNA metabolism, including repression and activation of mRNA initiation, control of mRNA elongation, and the deadenylation and subsequent degradation of mRNA. In Saccharomyces the CCR4-NOT complex comprises a core complex of 9 proteins (Ccr4p, Caf1p, Caf40p, Caf130p, Not1p, Not2p, Not3p, Not4p, and Not5p), Caf4p, Caf16p, and several less well characterized proteins. |
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | CCR4-NOT transcription complex subunit [Medicago truncatula] gi|357453719|ref|XP_003597140.1| | 19 | ||
| – | CCR4-NOT transcription complex subunit [Medicago truncatula] gi|357453719|ref|XP_003597140.1| | 19 | ||
| – | CCR4-NOT transcription complex subunit [Medicago truncatula] gi|357496205|ref|XP_003618391.1| | 9 | ||
| – | CCR4-NOT transcription complex subunit [Medicago truncatula] gi|357472457|ref|XP_003606513.1| | 18 | ||
| – | CCR4-NOT transcription complex subunit [Medicago truncatula] gi|357472457|ref|XP_003606513.1| | 19 | ||
| – | CCR4-NOT transcription complex subunit [Medicago truncatula] gi|357472457|ref|XP_003606513.1| | 3 | ||
| – | CCR4-NOT transcription complex subunit [Medicago truncatula] gi|357472457|ref|XP_003606513.1| | 3 | ||
| – | PREDICTED: lisH domain-containing protein C1711.05-like isoform X1 [Cicer arietinum] gi|502152209|ref|XP_004508817.1| | 9 | ||
| – | PREDICTED: lisH domain-containing protein C1711.05-like isoform X1 [Cicer arietinum] gi|502152209|ref|XP_004508817.1| | 9 | ||
| – | CCR4-NOT transcription complex subunit [Medicago truncatula] gi|357472457|ref|XP_003606513.1| | 4 | ||
| – | CCR4-NOT transcription complex subunit [Medicago truncatula] gi|357472457|ref|XP_003606513.1| | 18 | ||
| – | General negative regulator of transcription subunit 4; TAIR: AT3G48070.1 RING/U-box superfamily protein; Swiss-Prot: sp|P34909|NOT4_YEAST General negative regulator of transcription subunit 4; TrEMBL-Plants: tr|I3S4I8|I3S4I8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0252700 | 12 | ||
| – | General negative regulator of transcription subunit 4; TAIR: AT3G48070.1 RING/U-box superfamily protein; Swiss-Prot: sp|P34909|NOT4_YEAST General negative regulator of transcription subunit 4; TrEMBL-Plants: tr|I3S4I8|I3S4I8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0252700 | 12 | ||
| – | CCR4-NOT transcription complex subunit 4; TAIR: AT3G45630.1 RNA binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|O95628|CNOT4_HUMAN CCR4-NOT transcription complex subunit 4; TrEMBL-Plants: tr|A0A151TN31|A0A151TN31_CAJCA CCR4-NOT transcription complex subunit 4; Found in the gene: LotjaGi2g1v0365000 | 24 | ||
| – | CCR4-NOT transcription complex subunit 4; TAIR: AT5G60170.2 RNA binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|O95628|CNOT4_HUMAN CCR4-NOT transcription complex subunit 4; TrEMBL-Plants: tr|A0A0R0FWC0|A0A0R0FWC0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0270600 | 25 | ||
| – | CCR4-NOT transcription complex subunit 4; TAIR: AT3G45630.1 RNA binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|O95628|CNOT4_HUMAN CCR4-NOT transcription complex subunit 4; TrEMBL-Plants: tr|K7M9K7|K7M9K7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0270600 | 24 | ||
| – | RING/U-box superfamily protein; TAIR: AT5G62910.1 RING/U-box superfamily protein; Swiss-Prot: sp|O95628|CNOT4_HUMAN CCR4-NOT transcription complex subunit 4; TrEMBL-Plants: tr|A0A151R8X5|A0A151R8X5_CAJCA CCR4-NOT transcription complex subunit 4; Found in the gene: LotjaGi4g1v0241400 | 12 | ||
| – | CCR4-NOT transcription complex subunit 4; TAIR: AT3G45630.1 RNA binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|O95628|CNOT4_HUMAN CCR4-NOT transcription complex subunit 4; TrEMBL-Plants: tr|K7LHH2|K7LHH2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0073600 | 24 | ||
| – | CCR4-NOT transcription complex subunit 4; TAIR: AT3G45630.1 RNA binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|O95628|CNOT4_HUMAN CCR4-NOT transcription complex subunit 4; TrEMBL-Plants: tr|K7LHH2|K7LHH2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0073600 | 24 | ||
| – | CCR4-NOT transcription complex subunit 4; TAIR: AT3G45630.1 RNA binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|O95628|CNOT4_HUMAN CCR4-NOT transcription complex subunit 4; TrEMBL-Plants: tr|K7LHH2|K7LHH2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0073600 | 24 | ||
| – | CCR4-NOT transcription complex subunit 4; TAIR: AT3G45630.1 RNA binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|O95628|CNOT4_HUMAN CCR4-NOT transcription complex subunit 4; TrEMBL-Plants: tr|K7LHH2|K7LHH2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0073600 | 24 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| mobidb-lite | MobiDBLite | 1 | 4.76 |