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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0253000 |
| Transcript ID | LotjaGi2g1v0253000.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ABC transporter B family protein; TAIR: AT3G28345.1 ABC transporter family protein; Swiss-Prot: sp|Q9LHD1|AB15B_ARATH ABC transporter B family member 15; TrEMBL-Plants: tr|W9QZX2|W9QZX2_9ROSA ABC transporter B family member 15; Found in the gene: LotjaGi2g1v0253000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:71862281..71864153) extracted from Lotus japonicus Gifu genome v1.2.
GTGTTGTTTATCAGTAGCAAAATCATGAATAGTATTGGCGATTCTTCCACCAGCACAAACAACACTTTCGTCCATAACAT CAATGAGGTTCTGTCTTCTCACTTCATCAACAATCACTAAATTTATGTTTGTATCAGTTTCTCTTTTTTTTAAGTTAATT TTGACATGCAGAAGCTAGTTACTAAAGCTTCTCACCAGAATTGATTTTGACTTCAGAATCATTTATTGAATGATATCCAA ACGTGGAATTGTTGGTTCTGCGTTCACTACGCTCAAGTTTTGCACTTCTGAAGTTCAAATTCCGGAAGCTATATTCACCT CTGGAAGTGATTTTTTTTTTCATTTTGGAAGTTCAAGTTCCGGAAATGTATTTATTATACTTCTCGAAATTTAACTTCCG GAAATGAATATAACTTCGGGTCTTAAAGTGCAAAACTTGACCGCGGTGACTAGAGGAAGCTAGGAGTGAAGGATCCAACG ACTGCAATGAATCCAGATGCCCAAACATGTATTAGCTAGCTTATTTGGTTTGCTTGTGATGCAGAATGCAGTGAATTTGT GTTATTTGGCTTGTGGTTCTTTTGTTGCTTGCTTCCTTGGTGAGTTTCAGTTTTGCTATGATTATGCTTCTCTTTCATCT GTATGATCCATGAGTATATATAAATTAACACCTTTACTTTGGTTGATCACTTCAGAGGGTTATTGTTGGACAAGAACAGG TGAAAGACAAGCTGCAAGAATGAGAGCCAGATATTTGAAAGCAATTCTCAGACAAGAAGTAGCATACTTTGATTTGCATG TCACAAGCACATCAGAGGTCATCACCAGCGTCTCTAATGACAGCCTTGTAATTCAAGATGCTCTTAGTGAAAAGGTGAAC TTTTTTTTAAGAATATTTCTTTTCCATGTCTAGATAAATAAGAAAAGAAATAAGAGAAATAAATGAGATGATATATGATG TGATAGAAAATCCAGAGAAATATAAGAAAAAAAAAAGAAAGAAAATGAGATGAGAGAAAATAAAGTGTGAATGAATCATT ATTCTTTTTCGAAATTAGATTTACTGTGGTCGCCTCGCCGTTCATGTAGTCAAATTTTGTATTTCTGAATTTTCGGAAGT TATATTCACTTCCAGAAAAGTTCAACTTTCGAAAGTGAAAGTAACTTCTCTAAATTAAACTTTTAGAAGTGCAAAACTTG ACTCCAATAACTGGGGATTGATTGCAGTGAATCAATTTTGAATTTTAATCATTATGTTGTGGCACTAAGCCACTAACAGA GTGAATTTCTTCCAATTTGAAAACTACACAGGTCCCAAATTTTTTGATGAATGCGTCTATGTTTATTGGGAGCTACATAG CAGCTTTTGCATTACTATGGAGATTGGCAATTGTGGGGTTCCCTTTTACTGTTCTTCTTGTGATCCCTGGTTTGATGTAT GGGAGGACCTTGATGAGTTTGTCTAGAAAGATTAGTATAGAGTATAACCATGCCGGTACAATAGCAGAACAAGCAATATC TTCCATCAGAACCGTTTATTCCTTTGCAGGGGAAAGCAAGACCATTAATGCTTTCTCTGAAGCTCTACAAGGCTCTGTGA AATTGGGGCTGAAACAAGGCCTAGCTAAAGGCTTAGCCATAGGAAGCAATGGCCTTGTCTTTGCTATTTGGTCCTTCATG TCCTATTATGGTAGCAGAATGGTCATGTACCATGGCGCTAATGGAGGGACTGTGTATGTAGTTGGAGCCTCCATAGCACG TGGTGGATTGTAATTACACATACCCTTTATCTCATAATTTTAAATTCATGCAATTGAACCTCAAAAGATTCAAACTTTGT GGTTCTTTTCGGTATTGTGTGACAGGTCTTTAG
CDS sequence (LotjaGi2g1v0253000.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGAGCCAGATATTTGAAAGCAATTCTCAGACAAGAAGTAGCATACTTTGATTTGCATGTCACAAGCACATCAGAGGT CATCACCAGCGTCTCTAATGACAGCCTTGTAATTCAAGATGCTCTTAGTGAAAAGGTCCCAAATTTTTTGATGAATGCGT CTATGTTTATTGGGAGCTACATAGCAGCTTTTGCATTACTATGGAGATTGGCAATTGTGGGGTTCCCTTTTACTGTTCTT CTTGTGATCCCTGGTTTGATGTATGGGAGGACCTTGATGAGTTTGTCTAGAAAGATTAGTATAGAGTATAACCATGCCGG TACAATAGCAGAACAAGCAATATCTTCCATCAGAACCGTTTATTCCTTTGCAGGGGAAAGCAAGACCATTAATGCTTTCT CTGAAGCTCTACAAGGCTCTGTGAAATTGGGGCTGAAACAAGGCCTAGCTAAAGGCTTAGCCATAGGAAGCAATGGCCTT GTCTTTGCTATTTGGTCCTTCATGTCCTATTATGGTAGCAGAATGGTCATGTACCATGGCGCTAATGGAGGGACTGTGTA TGTAGTTGGAGCCTCCATAGCACGTGGTGGATTGTAA
Protein sequence (LotjaGi2g1v0253000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRARYLKAILRQEVAYFDLHVTSTSEVITSVSNDSLVIQDALSEKVPNFLMNASMFIGSYIAAFALLWRLAIVGFPFTVL LVIPGLMYGRTLMSLSRKISIEYNHAGTIAEQAISSIRTVYSFAGESKTINAFSEALQGSVKLGLKQGLAKGLAIGSNGL VFAIWSFMSYYGSRMVMYHGANGGTVYVVGASIARGGL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 197 | 197 | 1.3E-110 | ||
| SUPERFAMILY | 1 | 190 | 190 | 5.76E-31 | ||
| Gene3D | 1 | 197 | 197 | 3.0E-53 | ||
| Pfam | 1 | 189 | 189 | 3.9E-35 | ||
| ProSiteProfiles | 1 | 198 | 198 | 32.959 | ||
| CDD | 1 | 193 | 193 | 2.24002E-56 | – | |
| Phobius | 1 | 48 | 48 | - | – | |
| PANTHER | 1 | 197 | 197 | 1.3E-110 | – | |
| Phobius | 49 | 68 | 20 | - | – | |
| TMHMM | 65 | 87 | 23 | - | – | |
| Phobius | 69 | 73 | 5 | - | – | |
| Phobius | 74 | 93 | 20 | - | – | |
| Phobius | 94 | 151 | 58 | - | – | |
| Phobius | 152 | 171 | 20 | - | – | |
| TMHMM | 153 | 172 | 20 | - | – | |
| Phobius | 172 | 198 | 27 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | ATPase activity, coupled to transmembrane movement of substances | Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi2g1v0253000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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