Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0254700 |
| Transcript ID | LotjaGi2g1v0254700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent zinc metalloprotease FtsH; TAIR: AT3G28600.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|F4J0C0|AATPA_ARATH AAA-ATPase At3g28600; TrEMBL-Plants: tr|A0A1J7FQG7|A0A1J7FQG7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0254700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:72075877..72076695) extracted from Lotus japonicus Gifu genome v1.2.
ATGGATCCAAAGAAGAAGGAAGAGATAATAAACGACCTTGACATGTTCAGAAATGGAAAAGAGTACTATGCCAAGGTTGG GAAGGCTTGGAAAAGAGGGTATTTGTTGTATGGTCCACCAGGAACTGGCAAATCAACCATGATAGCTGCCATGGCTAATT TCATGAACTATGATGTGTATGATCTTGAACTGACAGCAGTCAAGGAAAACACTGAGCTGAAAAAATTGCTGATTGAAACA TCCAGCAAATCAATCATAGTGATTGAAGACATTGACTGCTCTCTTGATCTTACAGGCCAAAGGACAAAGACGAAAAAAGA AAAAGTTGAGAACGGAAGCGAGGTAACACTATCTGGGATGTTGAATTTTATTGATGGGATTTGGTCAGCATGTGGGGGAG AGAGGATCATCATTTTCACAACCAACTTTGTGGACAAACTTGATCCTGCTCTCATTAGGAGAGGGAGGATGGACAAGCAC ATAGAAATGTCCTATTGCAGCTATGAAGCTTTCAAGGTGCTTGCCAAGAACTACTTGGGTATTGATGACGATTCACATAG CTTGTTTCCCATTATTGAGAAGTTGTTGGGAGAGACCAATATGTCACCTGCTGATGTTGCTGAGAATCTGATGCCAAAGA CAACCACTGAAGATTCTGATACTTCCTTGCAGAAACTGATTCATTCTCTTGAGAATGCTAAGGAGGAGGCCAAGAAGAAG GAAGAGGAGGAAGCAAAGTTGAAGGCTGAGAAAGATAAACAAGAGTTGGCTCAAGAGGAAGAGGTGTAAAGTAATGGAAA ATCTGGGGAAGAGGTGTAA
CDS sequence (LotjaGi2g1v0254700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATCCAAAGAAGAAGGAAGAGATAATAAACGACCTTGACATGTTCAGAAATGGAAAAGAGTACTATGCCAAGGTTGG GAAGGCTTGGAAAAGAGGGTATTTGTTGTATGGTCCACCAGGAACTGGCAAATCAACCATGATAGCTGCCATGGCTAATT TCATGAACTATGATGTGTATGATCTTGAACTGACAGCAGTCAAGGAAAACACTGAGCTGAAAAAATTGCTGATTGAAACA TCCAGCAAATCAATCATAGTGATTGAAGACATTGACTGCTCTCTTGATCTTACAGGCCAAAGGACAAAGACGAAAAAAGA AAAAGTTGAGAACGGAAGCGAGGTAACACTATCTGGGATGTTGAATTTTATTGATGGGATTTGGTCAGCATGTGGGGGAG AGAGGATCATCATTTTCACAACCAACTTTGTGGACAAACTTGATCCTGCTCTCATTAGGAGAGGGAGGATGGACAAGCAC ATAGAAATGTCCTATTGCAGCTATGAAGCTTTCAAGGTGCTTGCCAAGAACTACTTGGGTATTGATGACGATTCACATAG CTTGTTTCCCATTATTGAGAAGTTGTTGGGAGAGACCAATATGTCACCTGCTGATGTTGCTGAGAATCTGATGCCAAAGA CAACCACTGAAGATTCTGATACTTCCTTGCAGAAACTGATTCATTCTCTTGAGAATGCTAAGGAGGAGGCCAAGAAGAAG GAAGAGGAGGAAGCAAAGTTGAAGGCTGAGAAAGATAAACAAGAGTTGGCTCAAGAGGAAGAGGTGTAA
Protein sequence (LotjaGi2g1v0254700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDPKKKEEIINDLDMFRNGKEYYAKVGKAWKRGYLLYGPPGTGKSTMIAAMANFMNYDVYDLELTAVKENTELKKLLIET SSKSIIVIEDIDCSLDLTGQRTKTKKEKVENGSEVTLSGMLNFIDGIWSACGGERIIIFTTNFVDKLDPALIRRGRMDKH IEMSYCSYEAFKVLAKNYLGIDDDSHSLFPIIEKLLGETNMSPADVAENLMPKTTTEDSDTSLQKLIHSLENAKEEAKKK EEEEAKLKAEKDKQELAQEEEV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 255 | 255 | 7.1E-136 | – | |
| Gene3D | 1 | 165 | 165 | 2.2E-41 | – | |
| PANTHER | 1 | 255 | 255 | 7.1E-136 | – | |
| SUPERFAMILY | 2 | 213 | 212 | 8.75E-47 | ||
| SMART | 30 | 167 | 138 | 9.9E-9 | ||
| CDD | 31 | 165 | 135 | 1.5353E-11 | – | |
| Pfam | 35 | 164 | 130 | 4.4E-18 | ||
| ProSitePatterns | 135 | 154 | 20 | - | ||
| Coils | 220 | 262 | 43 | - | – | |
| MobiDBLite | 233 | 256 | 24 | - | – | |
| MobiDBLite | 233 | 262 | 30 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi2g1v0254700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…