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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0254800 |
| Transcript ID | LotjaGi2g1v0254800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent zinc metalloprotease FtsH; TAIR: AT3G28510.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q9LH84|AATP5_ARATH AAA-ATPase At3g28510; TrEMBL-Plants: tr|A0A072VE89|A0A072VE89_MEDTR p-loop nucleoside triphosphate hydrolase superfamily protein; Found in the gene: LotjaGi2g1v0254800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:72082191..72083987) extracted from Lotus japonicus Gifu genome v1.2.
CAAAGGTATCTTCCTAATCAGTTTCATGCCCTCATAGACAGATTTTTTTCAAAGAAACTAGCCAACTTGTTCAACCCATA TGTTGAGGTGAGGTTCTTTGAGTACACTGGTGATTACATGAGACGCAATGAAGCCTTCTCTGCCATTGAGCACTACTTGG CTTCAAAATCCTCCAACCAGTCAAGGAAGCTCAAAGGTGAATTTGTCAAGCAATCTCTGGTGCTCAAGATGGATGAACAA CAAGAAGTCAATGATGAGTTTCAAGGAATAAAGCTTGTATGGAGTCTCAAGAAGATAGTCCCCAAGACTACTTCTGTATC ATTCATTCCAGCTGATGAAAAAAGTTACTACCTTCTTACGTTTCACGGCAGACACCGCGGTTTAGCTACCGGATCTTACC TGAACCATGTATTGGGTGAAGGTAAGGCCATTGGACTCAGTAAGCGGCAGAGAAAGCTTTACACCAATTGTGTGGGGGAC GGTGATTATGAAAAGAGTAGAAAGTGGAGCCATGTGATTTTTGAGCATCCAGCATCCTTTGAAACAATTGCAATGGATCC GGAGAAGAAGAAAGAGATCATTGATGACCTTACTACATTCCGCGAGGCGAAAGAGTATTATGCTAGGATTGGAAAGCCTT GGAAGAGAGGCTATCTGCTTTATGGTCCTCCAGGGACTGGAAAATCAACATTAGTTGCTGCTATTGCTAATTTCATGAGG TATGATATATATGACATTGAGCTAACTAATGTGAAAACCAATGCAGAGCTGAGGAAACTTTTAATTGGAATCACATCCAA GTCGGTTGTTGTGATTGAGGATATAGATTGCTCACTTGATCTCACAGGTCAGAGGGAGACAAATTCTGAGAATGGCAAAG GTAAAAAGGAGAAGAATGCAGTTACTTCTCTGAAGGAACAAGCTGCAAGTACAGCAGATAAGAATAAAAGCAGCAAGGTC ACACTTTCAGGACTGCTGAATTTCATTGATGGGATTTGGTCAGCTAGTACTGGAGAGAGACTGATCATATTTACCACTAA TTATGTGGGGAAACTTGACGAGGCTCTCATTCGTAGAGGAAGAATGGACATGCATATTGAACTTTCCTACTGTGGATTTG AGGGATTCAAAGTGCTGGCAAAGAATTATCTAAATCTGGAGTCTCACCCCTCATTTGGCACCATTTGCTACTTGTTGGAG GAGAAGAACATGACCCCTGCAGATGTTGCGGAAAACTTGATGCCTAAGGTAGCTAATGAAAACATTGAGACTTCTCTGGA GAGATTGATCCAAGCCCTTAGAAGTTCCAAGGAAGCGGCACGAGCAAAAGCTGAGAAAGAACAAGGGAACACAGCAACAG AAGAGTCAAATGAAGAGGAATCATCAGAGGAGGAGAATGCAGAAGATGTTAAACAGTAGGAGCTTCTGGAAAACACTGAT AATGCTTAGTATATGCATCAAATTGTTGTTTGTTGTTGGTTATTACTATATATTTACTCCTAGACTTACTAATATATTTA TATATCAGTAGGAATATCTCTATGCATTATTGTAGCTATATAAGTGGGCTTACCTTAAACATTGTTGTACTGAATTACAG ACTCAGAGCATCTATTTGTATTATTATAGTTAATTAGTTATGAACAATGTTATGCTGAAATACAGACTCATCCTTTGTGC TTCAGACATTATAATAGAGTATGTTGACTATTTAGTATTAAAAAGAGACTAACTATGAATTGTTATTACGGATTTTGAAG TTTACATGGAAGACTATAGAATCACATAATGAGTCAA
CDS sequence (LotjaGi2g1v0254800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGACGCAATGAAGCCTTCTCTGCCATTGAGCACTACTTGGCTTCAAAATCCTCCAACCAGTCAAGGAAGCTCAAAGG TGAATTTGTCAAGCAATCTCTGGTGCTCAAGATGGATGAACAACAAGAAGTCAATGATGAGTTTCAAGGAATAAAGCTTG TATGGAGTCTCAAGAAGATAGTCCCCAAGACTACTTCTGTATCATTCATTCCAGCTGATGAAAAAAGTTACTACCTTCTT ACGTTTCACGGCAGACACCGCGGTTTAGCTACCGGATCTTACCTGAACCATGTATTGGGTGAAGGTAAGGCCATTGGACT CAGTAAGCGGCAGAGAAAGCTTTACACCAATTGTGTGGGGGACGGTGATTATGAAAAGAGTAGAAAGTGGAGCCATGTGA TTTTTGAGCATCCAGCATCCTTTGAAACAATTGCAATGGATCCGGAGAAGAAGAAAGAGATCATTGATGACCTTACTACA TTCCGCGAGGCGAAAGAGTATTATGCTAGGATTGGAAAGCCTTGGAAGAGAGGCTATCTGCTTTATGGTCCTCCAGGGAC TGGAAAATCAACATTAGTTGCTGCTATTGCTAATTTCATGAGGTATGATATATATGACATTGAGCTAACTAATGTGAAAA CCAATGCAGAGCTGAGGAAACTTTTAATTGGAATCACATCCAAGTCGGTTGTTGTGATTGAGGATATAGATTGCTCACTT GATCTCACAGGTCAGAGGGAGACAAATTCTGAGAATGGCAAAGGTAAAAAGGAGAAGAATGCAGTTACTTCTCTGAAGGA ACAAGCTGCAAGTACAGCAGATAAGAATAAAAGCAGCAAGGTCACACTTTCAGGACTGCTGAATTTCATTGATGGGATTT GGTCAGCTAGTACTGGAGAGAGACTGATCATATTTACCACTAATTATGTGGGGAAACTTGACGAGGCTCTCATTCGTAGA GGAAGAATGGACATGCATATTGAACTTTCCTACTGTGGATTTGAGGGATTCAAAGTGCTGGCAAAGAATTATCTAAATCT GGAGTCTCACCCCTCATTTGGCACCATTTGCTACTTGTTGGAGGAGAAGAACATGACCCCTGCAGATGTTGCGGAAAACT TGATGCCTAAGGTAGCTAATGAAAACATTGAGACTTCTCTGGAGAGATTGATCCAAGCCCTTAGAAGTTCCAAGGAAGCG GCACGAGCAAAAGCTGAGAAAGAACAAGGGAACACAGCAACAGAAGAGTCAAATGAAGAGGAATCATCAGAGGAGGAGAA TGCAGAAGATGTTAAACAGTAG
Protein sequence (LotjaGi2g1v0254800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRRNEAFSAIEHYLASKSSNQSRKLKGEFVKQSLVLKMDEQQEVNDEFQGIKLVWSLKKIVPKTTSVSFIPADEKSYYLL TFHGRHRGLATGSYLNHVLGEGKAIGLSKRQRKLYTNCVGDGDYEKSRKWSHVIFEHPASFETIAMDPEKKKEIIDDLTT FREAKEYYARIGKPWKRGYLLYGPPGTGKSTLVAAIANFMRYDIYDIELTNVKTNAELRKLLIGITSKSVVVIEDIDCSL DLTGQRETNSENGKGKKEKNAVTSLKEQAASTADKNKSSKVTLSGLLNFIDGIWSASTGERLIIFTTNYVGKLDEALIRR GRMDMHIELSYCGFEGFKVLAKNYLNLESHPSFGTICYLLEEKNMTPADVAENLMPKVANENIETSLERLIQALRSSKEA ARAKAEKEQGNTATEESNEEESSEEENAEDVKQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 423 | 423 | 2.9E-188 | – | |
| PANTHER | 1 | 423 | 423 | 2.9E-188 | – | |
| Pfam | 2 | 57 | 56 | 2.7E-13 | ||
| SUPERFAMILY | 127 | 376 | 250 | 1.27E-52 | ||
| Gene3D | 132 | 331 | 200 | 4.1E-42 | – | |
| SMART | 175 | 333 | 159 | 1.7E-9 | ||
| CDD | 176 | 331 | 156 | 6.92663E-9 | – | |
| Pfam | 180 | 330 | 151 | 5.5E-16 | ||
| ProSitePatterns | 301 | 320 | 20 | - | ||
| Coils | 380 | 411 | 32 | - | – | |
| MobiDBLite | 398 | 433 | 36 | - | – | |
| MobiDBLite | 399 | 414 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi2g1v0254800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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