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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0256800 |
| Transcript ID | LotjaGi2g1v0256800.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FACT complex subunit SSRP1; TAIR: AT3G28730.1 high mobility group; Swiss-Prot: sp|O04235|SSRP1_VICFA FACT complex subunit SSRP1; TrEMBL-Plants: tr|A0A151S4Y7|A0A151S4Y7_CAJCA FACT complex subunit SSRP1; Found in the gene: LotjaGi2g1v0256800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:72298562..72304104) extracted from Lotus japonicus Gifu genome v1.2.
CACACACTTGATGTAAATGTAATTGGTTTATTTAAACCTGGGCTGGGCTAAAAGATTAAACAAGCCCGGCCCACTGAGTG TCTCAAAGAGTTATATTTCCGTGGCGCCATATTGCGTCTTTCCTTTCTCTCTCTATATACAGAGAAGAGACTGTGGTCTG TGGCGGTAACTTCGCTTTTCTCTGTGTACCTTCACACACCTCAATCTGCTTCATCTCACTCGCCACCATGACAGACGGTG GTCACCTCTTCAACAACATCACCCTCGGCGGCCGCGGCGGCACGGTCAGTTCTTCCTCTCTCTCTCTCTCTCTCTCACCC TCAATTGGTTCCGTTTTCCTTCCCTTTCGTCGAAACTGTTAATCTCGCTCCAAACCCTAATTTTTCATCTCGCTTCAACT AACATTTCTTTGACCTAATAGCTCTTGATTTCACTTTACCTGAAAATTTCGCTATCTTGCATTTTTTATTTTTTATTTAA TTCCATGTGAAAATGTCAATCAGTGAAAACCCTAATGTGTGTACTTTGTTAGCCATGACTGAAAAATGAGGCCAAGTTTA CCTATTTCATTGTTATTTTTGACAAAAAATAGGAAAGAAATGATTTTTGTTTCTAGTGAAATTGTGGGTATGTGGCTGAA ACTGGAAGTTATGTATGACAGTTTTTTTCATGGGTTTGCAGAATCCAGGGCAGATAAAAATATTCTCTGGAGGAATTGCA TGGAAAAGACAGGGGGGTGGTAAATCAATTGAGATTGATAAAGCTGATATAATGGGGGTCACATGGATGAAAGTTCCAAG GACTAATCAGCTTGGTGTTCAGATCAAAGATGGGCTGTACTACAAATTTACTGGATTCCGTGATCAGGTTAATCTGTGCC TCTATGGAATGTGCATTTACATATATATATTTAATGTAGAAAAATGGATTTTGAACTTATGGTCTGGTCTCTAATTTTTG TTCCTTTTGGAGTCAATCGCGGATCGTGGCCTGTCGGATGACCCCCAAAAATGAAATCCCACACAAGGGAAGGCCGTTAT TGGCCGCGAATAGCGAGATTTCGCAGCCGCGATAGGCTACGCTACGCGACGGCACTATCGCGCGCTATTGATAACTATGA TTAACAGTTTGACAGATCTTAATATTGATTAGTTATACTTGGATTGCTAATCAAAAGCTGTTTCATATGTTGATATTTTT ATACATATTTTGCAGGATGTTGTAAGCTTGACCAGTTTTTTCCAAAATAACTTTGGAATATCTGTAGATGAGAAGCAGCT TTCTGTTAGTGGGCGCAATTGGGGAGAAGTTGATCTAAATGGTTGTTGATATTTCCATGAAATCACTTTTGTCTTGCAAC TAATATTATCTGCATGATGCATTTGCATATATCAGACATCTCTCTTTGTAATCCTTACTTGCTATACTTCTAAAAATAGT GTTTGGGGAAAAGTAGTTTGACATCACTTTCTGTTTGACATTGCACCATCGTGAGGACATGGTATGTAAGCAAGGGGAAG CGGTTTCTTATTTTCAAAGGAACTGAGTTGATATCATTCAGTTTGTTTTTTTGACATACAGTATATATTCTTGTATAGTG CAGGATGGATTCAAATTTCAATATGTGAGATCTTATGTGCTGTTACTTCTCTTTTAACCATTTCAAAAGTTGGTTCTTTT CTTTTTGTTGTACTCTAGGTCTCCAATAAATCTAACCACCAATGCCTCCAATTTTATATTTACATGATGTACAAAAGTGA AAAAAATTGAGATAGGAAAGCATGAAAAAGTTAAGATAGGAAAGTGTTTTTCCTTTGGGGGAGGGGGGAGGGGACTGGGA GCTGCTTCTCAAACCGGAATTTCATCTCATTCTTGTTTTGTTTTTTCCTTTTGCCAATCAAATGCAGTCTTTCTCTTCGT GGTGAAGCTTCTTTGATGGAATTGACCTGACTTCTTCTGTGCAGTCATACTACCACTGTATGTACTTATGCTTCTAGTTA CATTTCAGGAAATATGCTGGCATTCATGGTTGGTTCAAAGCAATCTTTCGAGGTGTCTTTAGCTGATGTCTCTCAAACGA CGCTTCAAGGGAAAAATGATGTGATGTTGGAGTTCCATGTGGATGACACAACTGGAGCTAATGAGGTATATCTGTATATA CGTGCACATAAATTCTTTGATGTTTTAATGAAATTTCATATAGAACAACCTGCTTTCTCATCCAAGCTTTGGCTTGAACA ACATGCTGCTGTTCATAGTTTTTATATGGGTTTGCATTTTTTATGGTCTAATATTGTTCATGTTATGATGTCAGAAAGAT TCATTGATGGAGTTAAGTTTCCATATACCAAATTCCAATACCCAGTATGTTGGCGATGAAAATCATACTCCTGCTCAGGT CAGTTTGCTCATGACTTTTATATATCGCGCGATATAGTAACTTCTAGGCAACTGACATTTGCCCACTCTTTTTTTGTATC AGGTTTTCCGTGATAAAATAATGTCTATGGCTGATGTCGGTGCTGGAGGTGAAGATTCTGTTGTTACATTTGATGGTATT GCAGTCCTTACACCAAGGTGATCCTCTTTCAAATTATATTGTATACTGATGCTTGCATTTATGTCCTTTCATGAAAAAGG ATTAATCCCTATTAATGCAAATTTGTATTCTTGTGCAGAGGACGTTACAGTGTTGAGTTACACCTGTCATTCTTGCGGCT TCAAGGACAGGCTAATGATTTTAAAATCCAATATAGCAGTGTGGTTCGCCTATTTTTACTTCCTAAGGTTTATTTCCTGA TCATTTGTTTTCATATTAAGTGAACGATAACGTAGTGCAATCAGCCAACCATGTCTCTTATACTTGATGCTTTTATCTTG ACCTGTTAAGTACACTGACAACTTCGCATCTCAACGTTTATCTGCAGTCCAATCAGCCACATACTTTTGTCATTGTTAGT CTTGATCCCCCTATTCGGAAAGGACAAACTTTGTACCCTCATATTGTGATGCAGGTAATTGCTCACTGTTTTATGGTTCT CAATTTAGGTGATACATATTTTGCTTGCTTCTGAACCTAACATATTTTGCTCATTCCTGTATAGTTTGAAACTGATGTTG TTTTTCAAAGTGAATTGGCAATAAACGAAGATCTTTATAACACTAAGTACAAGGACAAGTTGGAGCTGTCTTATAAGGTA TTGCTTAAACTGTTGATAATTGCTTTACTGATATAGAACCCCTGAGATACTGCTTCGCAAAGGCTGCTTGTGTAAATAAA GAGCATAGTGATGCCATTATTGATACATATCATTCACAATTCAATAATCAGGGGCTAATCCATGAAGTGTTCACCACAAT ATTACGTGGCTTATCTGGGGCTAAAGTTACCAAGCCTGGAAAATTTAGGAGTTGTCTAGATGGTTATGCAGTGAAATCAT CTTTGAAAGCTGAAGATGGAATTCTGTATCCCCTTGAGAAGAGCTTCTTTTTCCTACCTAAACCTCCCACTCTTATTCTT CATGAAGAGGTAAAATCCATTTATTTTTTACTGATGGTCAGATATCTGCTAGCCACTCTTTGACATACGTTTTATACATT GGAGGTTTTGATTTTTTTCATCATCTCCTACTAGGTTGACTATGTAGAATTTGAGCGACATGCTGCCGGTGGTTCAAATA TGCATTATTTTGACCTTCTTATCAGATTAAAATCTGAGCAAGAGCATCTCTTCCGCAATATTCAGAGAAATGAATACCAT AATTTGTATAGTTTTATCAGGTATACTAGCTCATTGTCAAATTTTACTTTGTTACAATTAATTGTTTGTTTTAATCCTAA ACAATTTATTTTTGTTCTGCGCATACAGGGAAAAGGGCTTAAAAATTATGAACTTAGGAGGTGCCCAGCCAACTGTTGGT ATGGCTCAAGTTCTTGAGAATGATGATGATGATGCTGTTGATCCACATCTAGAGCGCATTAAAAATGAAGCTGGTGGAGA TGAAAGTGATGAGGAGGTACCCAAATCTGTATTTGATTTTATTCTTTAGCTCAAGGGTAACAGTTAGCAAATTAGTATTC TTTTTTCAGTAATCGAGGGGACGACATTTATTTATATATCCAACCGCTTCTTTAAATATTTGGGCATGAGAAAACCTAAG TGAGCTTGGAATTCTGCTTACATTACTATTTTCCTATTCTGAAGCTTGCATTTTCGGTGCTGAACTTTCTCCTGTTAATT AATCTATCCTTTTTAGTTTCTTGTATTGTTTGTTTTGCTCACTATGTGTTTGTGTGCATTTGCTCTGTCATCTGTTAATG TGAGCATGTCTCTTCAGTCCGCATGCAAGTTGCTCTACTTTCCCCTTTTTTCTTTTGGGGCACCCAATGTCTGGAACTTT GAAGAGTCTTTTTGCTTCTATGTTATTAATCAGTGGCAAATGTCAACAGGATGAAGATTTTGTTCTTGACAAGGATGATG GAGGTTCTCCTACTGATGATTCTGGGGGGGATGATTCTGATGGTAGTGATAGTGGTGATGAGAAAGAGGCAAGTGGTTTG TTTTTATTTGCCTTCATTACCTTGTGATACCTCTCTTTCTACTCTTTAAGTCTTTGGTGTTCCAGCCTTACACCTAATAG CGGTCTATTTTCAGAAGCCTGCCAAAAAGGAACCAAAGAAGGATCTGCCTTCTAAGGCATCTACTTCTAAGAAGAAGCCA AGAGATGCTGATGAAGATGGAAAGAAGAAAAAACAGAAGAAGAAAAAGGACCCAAATGCACCCAAGAGGGCAATGTCTGG TTTCATGTTCTTTTCGCAAATGGAAAGAGAGGTGTGTTCTACTGGAAATGATCGATTTTTCAATTAGAATTTATTTCTCA TTACTTCTTATCTCCTAATATTTTTTTTCAATGACAGAATCTAAAGAAAACTAATCCTGGAATTTCATTTACGGATGTTG GGAGAGTACTTGGAGAGAAATGGAAAAAGATGTCAAGTATGGCTTGTTTCATGTTGTTTCATTTCATGCAATTCCACTGA CTATTATGTTCTATGACTAAGTTTTTGTGTGTTGAATGCGCAGCGGAGGAGAAAGAACCATATGAGGTAAAAGCCCGTGC CGATAAGAAACGGTATATGGATGAGATTAGTGGCTACAAGAATCCACAACCGATGAATGTTGATTCAGGAAATGAATCTG ACAGTCCCTAAGGTTTTTGCTCTGATATTGAAAGTTTGTTAGCTTGCCCTTTGTTGGCTACGCTTAGGTGCTTAGTAAGT ATTGTTAGATATTTGTACTAGTAACCAGATCTGCTAATGTTGTTCTAATTAACAAGTTTGTGGCCGACTGAAACAGATCA ACAAAATTTATCGTTTTTTGCACCAACAGAATTTCATATGAAGAATGCTAAGTCCCAAATGATTTCACATTGTGTTAGCT ATCTTTTTTTTAAGTGGTTCAGTGTTATTTCACTATTATCTGTTATTAGGCCAAACACATGCTATGTACGTGCTTGTGGG AAGATAAACAATTTGAATTAGAC
CDS sequence (LotjaGi2g1v0256800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACAGACGGTGGTCACCTCTTCAACAACATCACCCTCGGCGGCCGCGGCGGCACGAATCCAGGGCAGATAAAAATATT CTCTGGAGGAATTGCATGGAAAAGACAGGGGGGTGGTAAATCAATTGAGATTGATAAAGCTGATATAATGGGGGTCACAT GGATGAAAGTTCCAAGGACTAATCAGCTTGGTGTTCAGATCAAAGATGGGCTGTACTACAAATTTACTGGATTCCGTGAT CAGGATGTTGTAAGCTTGACCAGTTTTTTCCAAAATAACTTTGGAATATCTGTAGATGAGAAGCAGCTTTCTGTTAGTGG GCGCAATTGGGGAGAAGTTGATCTAAATGGAAATATGCTGGCATTCATGGTTGGTTCAAAGCAATCTTTCGAGGTGTCTT TAGCTGATGTCTCTCAAACGACGCTTCAAGGGAAAAATGATGTGATGTTGGAGTTCCATGTGGATGACACAACTGGAGCT AATGAGAAAGATTCATTGATGGAGTTAAGTTTCCATATACCAAATTCCAATACCCAGTATGTTGGCGATGAAAATCATAC TCCTGCTCAGGTTTTCCGTGATAAAATAATGTCTATGGCTGATGTCGGTGCTGGAGGTGAAGATTCTGTTGTTACATTTG ATGGTATTGCAGTCCTTACACCAAGAGGACGTTACAGTGTTGAGTTACACCTGTCATTCTTGCGGCTTCAAGGACAGGCT AATGATTTTAAAATCCAATATAGCAGTGTGGTTCGCCTATTTTTACTTCCTAAGTCCAATCAGCCACATACTTTTGTCAT TGTTAGTCTTGATCCCCCTATTCGGAAAGGACAAACTTTGTACCCTCATATTGTGATGCAGTTTGAAACTGATGTTGTTT TTCAAAGTGAATTGGCAATAAACGAAGATCTTTATAACACTAAGTACAAGGACAAGTTGGAGCTGTCTTATAAGGGGCTA ATCCATGAAGTGTTCACCACAATATTACGTGGCTTATCTGGGGCTAAAGTTACCAAGCCTGGAAAATTTAGGAGTTGTCT AGATGGTTATGCAGTGAAATCATCTTTGAAAGCTGAAGATGGAATTCTGTATCCCCTTGAGAAGAGCTTCTTTTTCCTAC CTAAACCTCCCACTCTTATTCTTCATGAAGAGGTTGACTATGTAGAATTTGAGCGACATGCTGCCGGTGGTTCAAATATG CATTATTTTGACCTTCTTATCAGATTAAAATCTGAGCAAGAGCATCTCTTCCGCAATATTCAGAGAAATGAATACCATAA TTTGTATAGTTTTATCAGGGAAAAGGGCTTAAAAATTATGAACTTAGGAGGTGCCCAGCCAACTGTTGGTATGGCTCAAG TTCTTGAGAATGATGATGATGATGCTGTTGATCCACATCTAGAGCGCATTAAAAATGAAGCTGGTGGAGATGAAAGTGAT GAGGAGGATGAAGATTTTGTTCTTGACAAGGATGATGGAGGTTCTCCTACTGATGATTCTGGGGGGGATGATTCTGATGG TAGTGATAGTGGTGATGAGAAAGAGGCAAGTGAAGCCTGCCAAAAAGGAACCAAAGAAGGATCTGCCTTCTAA
Protein sequence (LotjaGi2g1v0256800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTDGGHLFNNITLGGRGGTNPGQIKIFSGGIAWKRQGGGKSIEIDKADIMGVTWMKVPRTNQLGVQIKDGLYYKFTGFRD QDVVSLTSFFQNNFGISVDEKQLSVSGRNWGEVDLNGNMLAFMVGSKQSFEVSLADVSQTTLQGKNDVMLEFHVDDTTGA NEKDSLMELSFHIPNSNTQYVGDENHTPAQVFRDKIMSMADVGAGGEDSVVTFDGIAVLTPRGRYSVELHLSFLRLQGQA NDFKIQYSSVVRLFLLPKSNQPHTFVIVSLDPPIRKGQTLYPHIVMQFETDVVFQSELAINEDLYNTKYKDKLELSYKGL IHEVFTTILRGLSGAKVTKPGKFRSCLDGYAVKSSLKAEDGILYPLEKSFFFLPKPPTLILHEEVDYVEFERHAAGGSNM HYFDLLIRLKSEQEHLFRNIQRNEYHNLYSFIREKGLKIMNLGGAQPTVGMAQVLENDDDDAVDPHLERIKNEAGGDESD EEDEDFVLDKDDGGSPTDDSGGDDSDGSDSGDEKEASEACQKGTKEGSAF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 519 | 516 | 5.9E-270 | – | |
| Gene3D | 4 | 95 | 92 | 7.7E-15 | ||
| PANTHER | 4 | 519 | 516 | 5.9E-270 | – | |
| Pfam | 8 | 99 | 92 | 2.3E-23 | ||
| Gene3D | 96 | 181 | 86 | 1.7E-21 | ||
| Pfam | 107 | 175 | 69 | 8.6E-25 | ||
| Gene3D | 200 | 339 | 140 | 9.6E-50 | – | |
| SUPERFAMILY | 207 | 441 | 235 | 2.95E-74 | – | |
| CDD | 208 | 341 | 134 | 1.07451E-66 | – | |
| PRINTS | 220 | 236 | 17 | 4.0E-69 | ||
| PRINTS | 242 | 258 | 17 | 4.0E-69 | ||
| PRINTS | 265 | 281 | 17 | 4.0E-69 | ||
| PRINTS | 330 | 343 | 14 | 4.0E-69 | ||
| Gene3D | 340 | 444 | 105 | 7.7E-35 | ||
| CDD | 343 | 442 | 100 | 2.03825E-43 | – | |
| SMART | 349 | 442 | 94 | 3.2E-33 | ||
| Pfam | 351 | 440 | 90 | 1.3E-20 | ||
| PRINTS | 357 | 375 | 19 | 4.0E-69 | ||
| PRINTS | 375 | 392 | 18 | 4.0E-69 | ||
| PRINTS | 401 | 417 | 17 | 4.0E-69 | ||
| PRINTS | 417 | 435 | 19 | 4.0E-69 | ||
| MobiDBLite | 469 | 530 | 62 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
Expression pattern of LotjaGi2g1v0256800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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