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Field | Value |
---|---|
Gene ID | LotjaGi2g1v0260100 |
Transcript ID | LotjaGi2g1v0260100.3 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Reticulon-like protein; TAIR: AT3G10915.3 Reticulon family protein; Swiss-Prot: sp|Q8GYH6|RTNLP_ARATH Reticulon-like protein B16; TrEMBL-Plants: tr|I3SEB5|I3SEB5_LOTJA Reticulon-like protein; Found in the gene: LotjaGi2g1v0260100 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:72809841..72811697) extracted from Lotus japonicus Gifu genome v1.2.
ATGTTCTTATCTTTGCTCTCCTTTGTCTCTATTGTAGTTGCTGATGTTATACTGTGGAAACGGTGGCCTGTTTCCTTGGG TGTCATTCTTGTTGCAACAGTTGCCTGGATCCTGCTAGAGTGGACTGGTTTACCATTTTTAACGATTTGTTCAGATGTCT TGCTGATTTTGATCGTACTATTGTTTCTGCATGCTAACTATGCTGCCTTTAGAAATAGGTTTGGCTAGTAACCATTTTCT GCTTGTTTTATGTTTTTGTCATGCTTAACACTAAGTCATTGGTCATCCCTTTCTCTTCATGCAGACAAGCACCAACATTA CCTGAACTAGTTGTGTCAGAGGAGATGGTTAATAATGTAGCAGCTTCGTTTCGGGTCAAAATCAATAATGTGCTCCTTAT AGCTCATGACATCACTATTGGCAAAGATTTTAGAGTATTTTTTAAGGTTAGTTTTGCTTGAGGCTTCTGCGTTTTAGGAA TTGTGGCTTTGGGTAACTGCGATCTAAATAATTAGTGATGTAATGGGCTCCGTTAGGCCTTTTTCTAAGGCTTGTTGTTA CCTTCTTGAAAGCCCATCTTGGCCTTAAAACCTATTTTATTATGGAGCTTTTAAATAGGCCAACAAGTATATTATTTGAA GATATTGAAGATGATGATGATGATTTTTATTTAAATAGGCGTCCATCAAGCTTAAAACATATTTTGTTGGCCTAAAAGCT TGACTTCTTTATCTAAATAGACTTTTTAAAAAAACATTGACTTAATTTATTTAGTAAGTAGATCTAGTTTGAGCCAAATG CAAGCTAGGCCTAATGTGGATCAGATTATAGGCCTCTTTTGGGCTTTATGGTCTATTCCCACGTCAGATTTTCTAGAAGG AATGTGCTAGTAAAGTTTAATAGGGATGACATATAACTCGGGATGGGCTTGCGCAATGTGTGAGCTAGTTGTATGTGTAT AGGATCTGCTCTGTTGAAGTATTTCCCTCAAATTTATCATTTGTTTTTTCAACAATATCTGGTGGTGACATGTTCTGTTA TATTATATATTCAATTCATGGTCTATTACTGTCTTTAAGTTTTATTTTGCTATACATTTAGAAATGGGATCATTATAATT CTTAATATTGTGCTGAAGAGATACTTCGTTGTCAATTGTCTACTTGACAGGTGGTGGTTTGTTTGTGGCTCTTGTCTGTC ATTGGCAGCTACTTCTCCTTCTTCACACTCGCATATATCGGTATGCTTACATCGTCCATCCTATTAAAATATAAAAGCAG TTTGTGATGTCTGTAATCGGTACCTCCTTTCTCACTAATGTGTAGTATATTCTGCACTAAATCTTTTTTATGTTATTTTC TTGAACCTTTGACCTTCCTATCAATATTCTTCTATTGTTTGGCTTGTCATGAGTCACCATAGCAGTCATCTGTGTCCAAC TCTACAATGTAACCCCTCTCAATAGTTTCATTGCATCTTCATGCTTTCCTGATTGTATGTTTGCACACACATGATCCTGT GCTTTTAATTTAGGTCACATGCTTTGTCACTAGTTCTAACTTCTAATTGACATCTCAATCTAGCGTGTTATGTGCTGTTA AGAATCATTTTGGCAGCTGGCTTTTGTGAAAAGCATTTGTAAAGCTATTGTAATTTTTTAACTTACATTCTTGCTCTTCA ATGTTGACAGGATCCCTCATGATGATTACGATCCCCGCGCTGTACAGGAAATATGGAAATTATGTAGATAAATGTTGTGG AATTTTACACCACCAATTTTCAAAACATTATAGAATAGTAGATGAAAGTGTTTTCAACAGACTGCCCCATAATGTATCAA AAGACAAAGAGTCTTGA
CDS sequence (LotjaGi2g1v0260100.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCTTATCTTTGCTCTCCTTTGTCTCTATTGTAGTTGCTGATGTTATACTGTGGAAACGGTGGCCTGTTTCCTTGGG TGTCATTCTTGTTGCAACAGTTGCCTGGATCCTGCTAGAGTGGACTGGTTTACCATTTTTAACGATTTGTTCAGATGTCT TGCTGATTTTGATCGTACTATTGTTTCTGCATGCTAACTATGCTGCCTTTAGAAATAGACAAGCACCAACATTACCTGAA CTAGTTGTGTCAGAGGAGATGGTTAATAATGTAGCAGCTTCGTTTCGGGTCAAAATCAATAATGTGCTCCTTATAGCTCA TGACATCACTATTGGCAAAGATTTTAGAGTATTTTTTAAGGTGGTGGTTTGTTTGTGGCTCTTGTCTGTCATTGGCAGCT ACTTCTCCTTCTTCACACTCGCATATATCGGATCCCTCATGATGATTACGATCCCCGCGCTGTACAGGAAATATGGAAAT TATGTAGATAAATGTTGTGGAATTTTACACCACCAATTTTCAAAACATTATAGAATAGTAGATGAAAGTGTTTTCAACAG ACTGCCCCATAATGTATCAAAAGACAAAGAGTCTTGA
Protein sequence (LotjaGi2g1v0260100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFLSLLSFVSIVVADVILWKRWPVSLGVILVATVAWILLEWTGLPFLTICSDVLLILIVLLFLHANYAAFRNRQAPTLPE LVVSEEMVNNVAASFRVKINNVLLIAHDITIGKDFRVFFKVVVCLWLLSVIGSYFSFFTLAYIGSLMMITIPALYRKYGN YVDKCCGILHHQFSKHYRIVDESVFNRLPHNVSKDKES
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 1 | 1 | - | – | |
Phobius | 1 | 14 | 14 | - | – | |
Phobius | 2 | 9 | 8 | - | – | |
Phobius | 10 | 14 | 5 | - | – | |
PANTHER | 12 | 198 | 187 | 3.2E-97 | – | |
PANTHER | 12 | 198 | 187 | 3.2E-97 | – | |
ProSiteProfiles | 13 | 198 | 186 | 30.172 | ||
Pfam | 13 | 166 | 154 | 4.3E-46 | ||
Phobius | 15 | 23 | 9 | - | – | |
TMHMM | 17 | 39 | 23 | - | – | |
Phobius | 24 | 41 | 18 | - | – | |
Phobius | 42 | 52 | 11 | - | – | |
TMHMM | 43 | 65 | 23 | - | – | |
Phobius | 53 | 70 | 18 | - | – | |
Phobius | 71 | 116 | 46 | - | – | |
Phobius | 117 | 143 | 27 | - | – | |
TMHMM | 122 | 144 | 23 | - | – | |
Phobius | 144 | 198 | 55 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0260100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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