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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0276000 |
| Transcript ID | LotjaGi2g1v0276000.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nuclease S1; TAIR: AT1G68290.1 endonuclease 2; Swiss-Prot: sp|Q9C9G4|ENDO2_ARATH Endonuclease 2; TrEMBL-Plants: tr|A0A1J7HPH3|A0A1J7HPH3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0276000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:74787370..74790349) extracted from Lotus japonicus Gifu genome v1.2.
TAAGAAAATTACACTTGGATTATCTATTAATAATATTGTGGACTTCTTGAAACTCTAAATCAACCATGTAGGTTTATTGT AATTATAAACTATAAACTAACCCCATAACCTTCTATTTTTTGAATTCAGTCCTTATGATGGGTGAAAAAACTGGATGTTG AATGAGATTAATATTTTCACCTTCTTTCACCTTGTTTCAGAGATGTTCATCATGTTTCACCTTTTTCACCTTCTTTTAAT TCTGCCTCTGGTTTTAGGGTTCCTTCTCTTCTTCCCATTTCACCTCACCTTCTGGATACGTTATGTTCTTCCCTTCGCCT TTGGTTTTCGAATTGTGATCAATACGTTGCTGTTTTTGTGGGAAATTTACTGAATCTGCATCGGGTTCGTGGATTGGGGC TCCATAGAAAGGTTCCAGTTAGGGTTCGAAGGATTTGGGTTTGAGAAATCCCCAAATCTGTCCCAGTAGACCGCGAACAG AAATGGAAGAATAGGGAATACGGCTGAACGGCGAAGACATGGAAGAAAACGCCTTCACGGCGAGCACAAGGAAGAACGAA GGGAAGAACGGCAGAGAACACAAGCCACAAATTTTCTGCGATTTCTGGATCTTTGTTCTGTTTGCTGTGTTCGAACTTTG CCTCATCCTTGCTGGGATTCATGATCGACCTGCTGCTGTATGGTCTACTGGTTGAAGGGTTAAATTGGTTAAATTAAATT GGGTGGGATTATGTTCTTGGCTGTCATTATTTGTGTTGTGGGGTTAATTAGTTTATCAGCCAGGTGAATTATATAATATC CACCATGCCTCCCATATGAGCAATACAAATTTTCATCACAATGTCAGCACTCAGCTGTCCAAATATGACTTATAACGCAA ATCAATTAATATTGATAATGTCCAAACACATCCCACGTTGAAGCCTGACCTTAAAGCACATCAATTAATATTGTCCAATC AGATCCCATGTTATAACCAATTCATGCACTATATAATTAACCCTCATGCACCTCAACCTGCAGTTTAAAGTTATCTTGTG TTTTATTTATTAAAAGCAGTGCACAATGAGTTGTTGCAGAATTCAGCTAGTAGTTATAGTCTCATTCATGCTTTTGCTTC CAAATTCCCAAGGATGGGGAGATGAAGGGCATACCATTGTTTGTAAGATTGCTCATGTGCCTAACATAACATATTATCTT TCTGTATCTAGCTATCTCTCTGATTGGTTTGTCACTACATTCTTTAATTTTTCTCTCACTTGTGAACAGGCTCGTCTCAC CGACTCAGCTGCTGAGGCAGTGAGGAAACTGCTGCCAAAATCTGCAGAAGACTTGGCCAGCAAGTGTTCATGGGCAGATC ATCTTAAGGTAGTCTTTCCCTGGGCATCTGCTTTGCACTATGCTGATACTCCTGACTCCGTTTGCAGTTACCAGCATGAC AGTAAGTTCCTTTCTCATTGTTTCCGAGGTCCATAAAAAATCCACACACCAGATGATTTAGAACTATTCTCATAATAAGA AGTAATTTCTATTTGAATAAGAGAAATTTATATCTTTTATCTCTTTTTATAATGATGTAGTACTGACCTGATGTCTGATC ATCTATTTAGGGGATTGTGTAGATCACAAACGTGGAATTAAGGGGCGATGTGTTGTGTCGGCGATTACCAATTATACCAA CCAGCTCCTCGTTTATGGCAGCGACACAAAATCTAGATGTAAATTCTTGCTTGAAAACTGATAAGCTCATCAGCTGTACT TGTACCCTATTGATATCTTCATTACAGACTAATAAGTTCTTGTTTGGATATCAGATAACCTAACACAAGCTCTCCTTTTC CTTTCACATTTTATGGGAGACATCCATCAGGTATGAATCTATACCTGCGTACATTGCTTCCACATGAATTTCCAATGTGG TTAATTAATGGCTTAATCTGTAATGTGCAGCCTCTACATTGTGGCGCTGTCGAAAACCAAGGAGGCAATACAATTCAAGT TCGTTGGTACAAAAGGAAGGAAAAACTTCACAATGTAACTCATCAATTTGTTAGCTTCAATTGCAGTATATATGATCCAA TTCAATGTTCATCACTATCTAAATAAAAACCATACACAGGTTTGGGACAATAGCATAATTGAGACAGAACTTAAAAGATT CTACGACTCGGACATGGTGGAATTTGTCGATGCACTTCAAACGAACATTACGGTATTCTATGAAGCATCTTTTATATATA ATCATCAATTAATCTAAGAAATTTCCTGTCATCTCAAAGTTTGATCTTGTTATTTGAATCAACAGAAAGTATGGAGTGAT GAAGTAGAAGAATGGGAGAGCTGTGGTTCTGATGAAATCGCATGTCCAATTATGTATGTCACATAATTAAGCACCTATTA ATTAGTACTTAGTAGGATGATTTAACTGAACGTTTCACTACTAGTTCATTTCAAAGAATATACATGGAAATATTTAATTA CATTAACGAATTTGTTTTCAATTTTTTTAGATATGCTTCTGAAAGTAGCATAGATGCCTGTAAATGGGCATATGCAGATG CCTCTGAAGGGACCACCCTGGGAGGTAATTAAGCTATAAGAGCTCTAATCTAATATAGTTAAGATTATTTTCTTATACTT TTTTCTCACCATACCATGAAATTGTAATATGCAGATGATTACTTCTTATCACGATTACCCATAGTCAATTTGCGATTAGC TCAAGGAGGAGTTCGATTGGCTGCAACTCTCAATCGTATTTTTGATACAGAGCTTGCAGCAATGTCCATGTAACTTATTG AAGGAGACTTTTTACATTTTAAAAGGAATAAAGTGTTAACTACTACTGTTGCAGTGTCAACACACGTTTCATACTATTGT GATTCTTATTGTAAATTTGATTTTTAAATCCATGGAAGTTTATTATATCCCACTATGTGAATATTTCGAACATAAATAAA TTTTTAATTTTCGACGTGCT
CDS sequence (LotjaGi2g1v0276000.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGAAAACGCCTTCACGGCGAGCACAAGGAAGAACGAAGGGAAGAACGGCAGAGAACACAAGCCACAAATTTTCTG CGATTTCTGGATCTTTGTTCTGTTTGCTGTGTTCGAACTTTGCCTCATCCTTGCTGGGATTCATGATCGACCTGCTGCTG CTCGTCTCACCGACTCAGCTGCTGAGGCAGTGAGGAAACTGCTGCCAAAATCTGCAGAAGACTTGGCCAGCAAGTGTTCA TGGGCAGATCATCTTAAGGTAGTCTTTCCCTGGGCATCTGCTTTGCACTATGCTGATACTCCTGACTCCGTTTGCAGTTA CCAGCATGACAGGGATTGTGTAGATCACAAACGTGGAATTAAGGGGCGATGTGTTGTGTCGGCGATTACCAATTATACCA ACCAGCTCCTCGTTTATGGCAGCGACACAAAATCTAGATATAACCTAACACAAGCTCTCCTTTTCCTTTCACATTTTATG GGAGACATCCATCAGCCTCTACATTGTGGCGCTGTCGAAAACCAAGGAGGCAATACAATTCAAGTTCGTTGGTACAAAAG GAAGGAAAAACTTCACAATGTTTGGGACAATAGCATAATTGAGACAGAACTTAAAAGATTCTACGACTCGGACATGGTGG AATTTGTCGATGCACTTCAAACGAACATTACGAAAGTATGGAGTGATGAAGTAGAAGAATGGGAGAGCTGTGGTTCTGAT GAAATCGCATGTCCAATTATATATGCTTCTGAAAGTAGCATAGATGCCTGTAAATGGGCATATGCAGATGCCTCTGAAGG GACCACCCTGGGAGATGATTACTTCTTATCACGATTACCCATAGTCAATTTGCGATTAGCTCAAGGAGGAGTTCGATTGG CTGCAACTCTCAATCGTATTTTTGATACAGAGCTTGCAGCAATGTCCATGTAA
Protein sequence (LotjaGi2g1v0276000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEENAFTASTRKNEGKNGREHKPQIFCDFWIFVLFAVFELCLILAGIHDRPAAARLTDSAAEAVRKLLPKSAEDLASKCS WADHLKVVFPWASALHYADTPDSVCSYQHDRDCVDHKRGIKGRCVVSAITNYTNQLLVYGSDTKSRYNLTQALLFLSHFM GDIHQPLHCGAVENQGGNTIQVRWYKRKEKLHNVWDNSIIETELKRFYDSDMVEFVDALQTNITKVWSDEVEEWESCGSD EIACPIIYASESSIDACKWAYADASEGTTLGDDYFLSRLPIVNLRLAQGGVRLAATLNRIFDTELAAMSM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 28 | 28 | - | – | |
| TMHMM | 25 | 47 | 23 | - | – | |
| Phobius | 29 | 47 | 19 | - | – | |
| Phobius | 48 | 310 | 263 | - | – | |
| Gene3D | 50 | 306 | 257 | 2.6E-84 | ||
| PANTHER | 52 | 307 | 256 | 1.1E-146 | – | |
| PANTHER | 52 | 307 | 256 | 1.1E-146 | ||
| CDD | 52 | 301 | 250 | 1.77317E-71 | ||
| Pfam | 52 | 302 | 251 | 8.1E-67 | ||
| SUPERFAMILY | 52 | 300 | 249 | 7.85E-64 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Endonuclease activity | Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks. | ||
| Biological process | DNA catabolic process | The cellular DNA metabolic process resulting in the breakdown of DNA, deoxyribonucleic acid, one of the two main types of nucleic acid, consisting of a long unbranched macromolecule formed from one or two strands of linked deoxyribonucleotides, the 3'-phosphate group of each constituent deoxyribonucleotide being joined in 3',5'-phosphodiester linkage to the 5'-hydroxyl group of the deoxyribose moiety of the next one. | ||
| Molecular function | Hydrolase activity, acting on ester bonds | Catalysis of the hydrolysis of any ester bond. |
Expression pattern of LotjaGi2g1v0276000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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