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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0278400 |
| Transcript ID | LotjaGi2g1v0278400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Agenet domain-containing protein / bromo-adjacent domain-containing protein, putative; TAIR: AT1G68580.2 Agenet and bromo-adjacent homology (BAH) domain-containing protein; Swiss-Prot: sp|Q9FZD9|DUF3_ARATH DUF724 domain-containing protein 3; TrEMBL-Plants: tr|K7K2M6|K7K2M6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0278400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:75011372..75015618) extracted from Lotus japonicus Gifu genome v1.2.
AAATCGCAATTCAAACCCTCTCTCTCTCTCTCTCTAACTCTCTCTCTCTCTCTTCCCCAATCTTCTTCTTCTTCATTCTC AAACCTTCGTGAGTTTCTCAAATTCGCGAAACGCACGAATCTCTCGTCGTTTCGTTCAGGGTTGGGCAGTTTTGATGGAG AGGCCGGGGAATTCGGTGGCGGCGGCGACGACGGCGACTTCAAGCCGCGAAGCGTATGTGAGCTGGGAGGAGGTTTTTGT CTCCGGTCGGAAGGGAAGGAAGGAGGTTTACTATCTGCTGAAACGGAGAGGCGGTGGTTCCGATCTGGCGGTTGTTGGCA AAGAGAAGAGCTCGACTCACATGTCTTATCACATAAGGAACGCTTCGTTGGGTCCCTATTCGAAGCTCAGAACGAGAAGA GAGGTTATCGATTGGTTGGATTCAATCGTTGCAGGTTCGTTGATATTGATTCTATACCTTGTTCTCGTGTGTTCTGGGAT TTGGGTTCTCTTAATTCCGTGTAAATTTGATGTATCTGAAGCTATTCTGGGTTCTTTATCTCTTCTGCGAATCGATAACA TGACCCTTTTGGCATATGAGATTTGGGTTTGTTTTGTTTTGTGAAAAAATTGTTTTTTGTTTGTTTCGGTTTCAGAATTA TGTAACTGAGCCTTCGAATTTTCAATTTGGCCTTGGTGAAGGATTTTGATTTGGATTAATTGGGATTGCTTTCGTGTTTT CTGATTAGGGTTCATCTTTTCTCTCGTTTTCTACCGGGTTTTGTGTTTTTGCCGCTTGATCTGCCTTCAATTTTTAATTG GGATTGAACAATTTTTTGTTTTCTGGGTGCTGCTATTGTAATGTTGTTTCTCCAATTGATGTTAATTTTGTTCTCTTTGC CTCTAATGTTTTCAGATTCGTCTGCAATTATGGTGGGCAAGCCGGGTCGTGAACCGGAAATTGGAACCTTGAAGGTAATT TGATTGTGTGGATCTATTGACTCCCTTTGCCAGTTCTTGTATCTATTGTTTTTTTGCTTTGTTGTGTTAAATCTGTAATA TGTTTTAAATCTCTTTTTCTGATTTTGGGGTGTGTTTTTCAGGAGAATCGATGTCAGAAGATGCCCCAGCCTATGAAAGA AACCTCGTGGATAGGGGTTCCATGGACCTGTAGGAAAAAAAGAAAGCACTATCAGTCGTTTAAGCGGAATGGTTATCAGA TTTCTGTGAGTAATCATCTTGTCCTGTTCTTCATTCACTTTTTAAATTTCCGGTCAGCTAGATCGCTTGTAATCTGACTC TTGTAATTTTGTTCTTCTCTCTGACTCTTTGCCTTCTTAAAATGTTCAGGTGTATGACTTTGTACTTATTCTAGCAGAAG AGCACAAGCATCTAGTTGCCTACCTGGAAGACATGTTTGAGGATTCCAGAGGCAGCAAGATGGTTGTGGTTCGCTGGTTT CACAAAATTGATGAGGTTGGTATCGTTTTGCCTCGCAATTTTAGTGACCGTGAGGTTTTCTTTTCTCCTTATCTTCAAGA TCTGAGTGTTGAATGCATAGATGGAATGGCGACAGTTCTCAGTCCCCAGCATTACGAAAAGTTTCAGAACGAAGCCTGTC ATACTCACCCGGAACCGCCATTCATATGCTACCAGAAATTCGAAAAAGATGATGTCAAACCCTTTGATATAACTCAAATT AGGGGTTACTGGAAACAAGAAATTCTCAGGGACATGTATACCGTCTCTGACTCAAAGTCTAACGGGAGTTCAGGGCAATC TGATGATGGCCCAGAATTGGAAGAAAACCTCCAGTCAACTATTGCTGGGATCAGACCTAAGAAGAGACAACGCCGTGCAA AAGAAGACCGCAAAGATGTGCTTGATCCAGCTTCTTCAAAATGGGATAACATGAGTAATAGTAAGATTGATACCAAAATT AGTACAGGAAACAATTCCTTGAAGTTGGCTGGGCCCGCCACAACGGCCACCACCAAAGCTACAAATGGGGATGCTCCACA GTATTTAGATGTAGGTTCCCGAGTTGAGGTCCTCTCTCAAGACAGTGGGATTAGAGGATGCTGGTTCAGAGCTTCTATCA TTAAAAAGGCCAAAGATAAAGTGAAGGTGCAATATCAAGACATTCAGGATGTAGTTGAAGAAGATAAAATGCTTGAGGTA TGTTAATACCATCTTCAACCCACTTAGTAATTTCTCGATGAATTATGACGAATATTTATGGAGACTAAAATTATTTTTAT TTATTTTATTTTGGTTTAGGAATGGGTTTTGGCGTCCAGAATTGCAGTGCCTGATGATCTGGGTCTTTGGATGCATGGTA GGACCAGGGTCCGGCCTGCTCCACCGTCAACTAAAAGCAAAATATCCTGGGTGGGTGCTGTTGGTTCAGTTGTTGAGGCC TGGTGGAATGATGGATGGTGGGAAGGCATCATTATTCAAAAAGAGTCTGAAGCTAATTATCATGTTTATTTCCCAGGTAT GGCCTTTTTACTCTTTATTACATTTTGAGGTTAATGGAATATCATGTGGCTCCTTTTTTTTATAACAAAAGTACTCTTAA TTATGGCTAATACTTTAGAGTGATGTCTTTGCAGGGGAAAAGATGTTGTTGGTTTTTGAGCCTGGTAATTTAAGACATGC TCAAGAGTGGACAGGGAATGAGTGGGTTAAAGTGAGGGAAAGGCCTGAACTTGTGACTTCTGTATTATCAAGCTTGAAAG TGAAAGTGAAACAAATGCCAAGCAAATCCTGTGACAGCAAATCAACTATAGCATCTACTGGTGATGGAGTACAATCTAAA CTGGCTGAGACTGGCTTAGATTCTCAAACAGATAAACCTAGGAAGTCTGAAGTTGTTCCAGATCTTTTGAAAGGTGAAGC GTTAAGGTGGAAGTCCTCCAGGAAGAGGAGTCGAAGTGGCGCCTCTCGTCGTAAGGTACTGCGAAATGACAGACCGTGTA CGAAGTCCCCTCAGATTCTGGAGTCAGATGCTTCTGATAGCTTCGTGATTCCAGCATCACTGAATGTTGATCATGATGAC TGCAAATTTGCTGGGGATCCAACCATTTTCAATTCTTCAGTTGTGCCGTCTCTAACTAATTTGGTTATGTGTAGGTGACT TCCTGACCGTCGTCTTTAGAATGATGTCTTGTTTTCTTGGTTCTATAGGTACAGTATTCAAACCTTAAACCCTCTTTAAA CCTAGGTGCATCCGTTCGATGCCTGTCTTCACTTTTGATTTCTTCTCTTTAGGTTAGGGTCTTTTTCTCCTCCCCGTTTA TCCTGTTTTTGTGATTTGTGGCATCGAAGCTTCATTTTCATTTGGGTGCTTGTGACAAATAGAAGCCCAAGGAGGCAAGG ATGATGCCATTCAAGTTTTGGTAGCAGAGTGACTTAGTTGAATAACCAAAGATAGCTTTGACTTTAGAGGATGTTCTTTT TGCATATAAAATGTTCCAATGTAATTTGTGTAGCATTCTCTAATAAAAATAGAAAATTTGCCTTTTACCTATGTTTGCCT TGTGCGAGCGTGTGTCAATTGATGTATTTTCTTTCTGCCTCTGCCATTTTTGCATGTGTTCTTCAATCATCTGATTTTGT GATGTGTTCAATTATTTTCAAGGTCAAGTAGTCGGTACTAACTACAGCGATGGTTCTCTTTGAATAAACATCAATACAAA TAATTGAATGAGTGGATAGTAATTTTGTGCACACAAAATTAATTTTTTTGGCAGAAGACTTCTGACAATTCTGGATGAGA GTATTAACTACACTGGTAGTCTAGCATAACCAACAATGGACAAATATGTCAGTAAATATTGTACCATCTCTGAGCAGTGA CCATATGTTATAAATAATTCGTAGGCAGTAAATCTTATCATGTAAGGTTATAATATAAACAGGAGTAAGTTTTGGGGGTC GTGTTGGTTTATTTTGTTACCATTTGAATTGGGGATTCTCCTGATAAATTAACAGGTGGTCGACAATCTGGTTTTCTTCC AGGATTAATGGACTATGGGAATAATGTTTATTTTGTTTAGCTGATAAAAATCAGGGACGGATCTATTCACACTCCCATGG GTCAAGTGCCCCCACTTGAATTTCATACCTACTGAACAATACATATATAAAATATACTAATTTGTTATAAATGCTGAACA ATTTACATATATAACGTGTTAATTTCCCCCACTAAATTTTTGTATTTTAATGTTTATGTACATGTGTGTAAATATATTAT TCCCACG
CDS sequence (LotjaGi2g1v0278400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGAGGCCGGGGAATTCGGTGGCGGCGGCGACGACGGCGACTTCAAGCCGCGAAGCGTATGTGAGCTGGGAGGAGGT TTTTGTCTCCGGTCGGAAGGGAAGGAAGGAGGTTTACTATCTGCTGAAACGGAGAGGCGGTGGTTCCGATCTGGCGGTTG TTGGCAAAGAGAAGAGCTCGACTCACATGTCTTATCACATAAGGAACGCTTCGTTGGGTCCCTATTCGAAGCTCAGAACG AGAAGAGAGGTTATCGATTGGTTGGATTCAATCGTTGCAGATTCGTCTGCAATTATGGTGGGCAAGCCGGGTCGTGAACC GGAAATTGGAACCTTGAAGGAGAATCGATGTCAGAAGATGCCCCAGCCTATGAAAGAAACCTCGTGGATAGGGGTTCCAT GGACCTGTAGGAAAAAAAGAAAGCACTATCAGTCGTTTAAGCGGAATGGTTATCAGATTTCTGTGTATGACTTTGTACTT ATTCTAGCAGAAGAGCACAAGCATCTAGTTGCCTACCTGGAAGACATGTTTGAGGATTCCAGAGGCAGCAAGATGGTTGT GGTTCGCTGGTTTCACAAAATTGATGAGGTTGGTATCGTTTTGCCTCGCAATTTTAGTGACCGTGAGGTTTTCTTTTCTC CTTATCTTCAAGATCTGAGTGTTGAATGCATAGATGGAATGGCGACAGTTCTCAGTCCCCAGCATTACGAAAAGTTTCAG AACGAAGCCTGTCATACTCACCCGGAACCGCCATTCATATGCTACCAGAAATTCGAAAAAGATGATGTCAAACCCTTTGA TATAACTCAAATTAGGGGTTACTGGAAACAAGAAATTCTCAGGGACATGTATACCGTCTCTGACTCAAAGTCTAACGGGA GTTCAGGGCAATCTGATGATGGCCCAGAATTGGAAGAAAACCTCCAGTCAACTATTGCTGGGATCAGACCTAAGAAGAGA CAACGCCGTGCAAAAGAAGACCGCAAAGATGTGCTTGATCCAGCTTCTTCAAAATGGGATAACATGAGTAATAGTAAGAT TGATACCAAAATTAGTACAGGAAACAATTCCTTGAAGTTGGCTGGGCCCGCCACAACGGCCACCACCAAAGCTACAAATG GGGATGCTCCACAGTATTTAGATGTAGGTTCCCGAGTTGAGGTCCTCTCTCAAGACAGTGGGATTAGAGGATGCTGGTTC AGAGCTTCTATCATTAAAAAGGCCAAAGATAAAGTGAAGGTGCAATATCAAGACATTCAGGATGTAGTTGAAGAAGATAA AATGCTTGAGGAATGGGTTTTGGCGTCCAGAATTGCAGTGCCTGATGATCTGGGTCTTTGGATGCATGGTAGGACCAGGG TCCGGCCTGCTCCACCGTCAACTAAAAGCAAAATATCCTGGGTGGGTGCTGTTGGTTCAGTTGTTGAGGCCTGGTGGAAT GATGGATGGTGGGAAGGCATCATTATTCAAAAAGAGTCTGAAGCTAATTATCATGTTTATTTCCCAGGGGAAAAGATGTT GTTGGTTTTTGAGCCTGGTAATTTAAGACATGCTCAAGAGTGGACAGGGAATGAGTGGGTTAAAGTGAGGGAAAGGCCTG AACTTGTGACTTCTGTATTATCAAGCTTGAAAGTGAAAGTGAAACAAATGCCAAGCAAATCCTGTGACAGCAAATCAACT ATAGCATCTACTGGTGATGGAGTACAATCTAAACTGGCTGAGACTGGCTTAGATTCTCAAACAGATAAACCTAGGAAGTC TGAAGTTGTTCCAGATCTTTTGAAAGGTGAAGCGTTAAGGTGGAAGTCCTCCAGGAAGAGGAGTCGAAGTGGCGCCTCTC GTCGTAAGGTACTGCGAAATGACAGACCGTGTACGAAGTCCCCTCAGATTCTGGAGTCAGATGCTTCTGATAGCTTCGTG ATTCCAGCATCACTGAATGTTGATCATGATGACTGCAAATTTGCTGGGGATCCAACCATTTTCAATTCTTCAGTTGTGCC GTCTCTAACTAATTTGGTTATGTGTAGGTGA
Protein sequence (LotjaGi2g1v0278400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MERPGNSVAAATTATSSREAYVSWEEVFVSGRKGRKEVYYLLKRRGGGSDLAVVGKEKSSTHMSYHIRNASLGPYSKLRT RREVIDWLDSIVADSSAIMVGKPGREPEIGTLKENRCQKMPQPMKETSWIGVPWTCRKKRKHYQSFKRNGYQISVYDFVL ILAEEHKHLVAYLEDMFEDSRGSKMVVVRWFHKIDEVGIVLPRNFSDREVFFSPYLQDLSVECIDGMATVLSPQHYEKFQ NEACHTHPEPPFICYQKFEKDDVKPFDITQIRGYWKQEILRDMYTVSDSKSNGSSGQSDDGPELEENLQSTIAGIRPKKR QRRAKEDRKDVLDPASSKWDNMSNSKIDTKISTGNNSLKLAGPATTATTKATNGDAPQYLDVGSRVEVLSQDSGIRGCWF RASIIKKAKDKVKVQYQDIQDVVEEDKMLEEWVLASRIAVPDDLGLWMHGRTRVRPAPPSTKSKISWVGAVGSVVEAWWN DGWWEGIIIQKESEANYHVYFPGEKMLLVFEPGNLRHAQEWTGNEWVKVRERPELVTSVLSSLKVKVKQMPSKSCDSKST IASTGDGVQSKLAETGLDSQTDKPRKSEVVPDLLKGEALRWKSSRKRSRSGASRRKVLRNDRPCTKSPQILESDASDSFV IPASLNVDHDDCKFAGDPTIFNSSVVPSLTNLVMCR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 21 | 675 | 655 | 1.2E-192 | – | |
| PANTHER | 21 | 675 | 655 | 1.2E-192 | – | |
| Gene3D | 122 | 268 | 147 | 2.5E-33 | ||
| SMART | 151 | 269 | 119 | 1.7E-4 | ||
| ProSiteProfiles | 151 | 269 | 119 | 17.569 | ||
| Pfam | 153 | 248 | 96 | 2.0E-9 | ||
| MobiDBLite | 309 | 350 | 42 | - | – | |
| SMART | 378 | 444 | 67 | 6.8E-7 | ||
| Pfam | 383 | 459 | 77 | 1.8E-19 | ||
| SMART | 467 | 523 | 57 | 3.6E-9 | ||
| MobiDBLite | 604 | 629 | 26 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Chromatin binding | Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase. |
Expression pattern of LotjaGi2g1v0278400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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