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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0303000 |
| Transcript ID | LotjaGi2g1v0303000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribonuclease; TAIR: AT2G02990.1 ribonuclease 1; Swiss-Prot: sp|P42813|RNS1_ARATH Ribonuclease 1; TrEMBL-Plants: tr|A0A1J7HE99|A0A1J7HE99_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0303000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:77695481..77697570) extracted from Lotus japonicus Gifu genome v1.2.
TTATAGGCTGATAAGAAGGCCAAGCATATACTGTTACGATACTCTTCCTTTCAGTTTGTCACTTTCAATTTCTGCCTATA AATTCACCAATTCCATCAAGGCATTTCCATAATTGTGCCATCCACTTCAAACCATAGAAATCACATTGAGAACAAAAAAG AGAGAGGAAAGACATGGAGTCTAAGGGGTCCAATTTGATTAAGCTTCTGCTACTAGTGAATTTCTCAGTTCTCTGTGTTG CACAGGATTTTGATTTCTTCTACTTTGTTCAGCAGGTAATGCAAAAAAACTCATTGAAAGGTCATTTGTTTTTGAATTAT GAGTACAGAATCACTTTATTGAATTGATGTTTGTGATTGTGCATTTGCAGTGGCCAGGATCATACTGTGACACAGACAAG AGTTGCTGCTACCCAACAACTGGGAAGCCTGATGCAGATTTTGGCATTCATGGTCTGTGGCCTAATTACAACACTGGATC ATACCCATCTAACTGTGATTCTAGTAACCCTTTCAAGCAATCTCAGGTACTTCTTTCCTCATCATTTGAATTTTTTATTT GATAATGTATAGTCTGCAAAGTTGTCATTTTTTTATGGACCAAGAGAACTAGGCTTTTTTGGATCCCATTTGATCATGGT ATCCTATTTACAAATCATGAAATGTTTTTGTCTTTTTGTTCCCTCACACGATGTCAGCTTATTGCGTGTTTGAATACGCA TTTGTGATAATTGATTTTGTTAAAATTGATTATTGTAAATATAAGTTGAAAGTTAAGTAATTTATGTTTTGATACATATA TGACTGGTTTTTGTTACGTAATTTGTAATTCAGTTGTAAAACTTTACAATTGATTATGTTTGAAGAAAAGCTACTCTTTT GGTTTTCTACTAGAATTGATTTTGGATATGAATGTCACCTAAAAAATGACTCTCAATGTTTTCATCAAAAATTGATTTTG CTCAACCAGAATTGATTCTAGGATTAGCTAACGTGAAACCAATCACACTCATAATTTTTCTACCCACATATTTGGATAAG TTTCTATTTTCATAGAGTTAGGATTTCTAAACATGAAACCACTGGTGGAAACTTTTCCAGTTTGTTGTCAACTTCTTAAT TAAATATTCGTGCCATAACTGCTACGTTGGAAAAAGCTTGAATAAAAATACTTCTTTTCAACCTCAAATCACTATCTCAA TATCTAAATAGAATATACTTCAATCCTACAAAGTATTCTGTTTATATGATGGTTTGCCACTAATTTGTCTTGTATATGAT GTCAGATATCTGATCTCACAAGCAGTTTGCAAAGGGAATGGCCCACACTAGCATGCCCAAGTGGCAATGGGATTCAATTC TGGACTCATGAATGGGAAAAACATGGCACTTGCTCAGAGTCAAACCTTAACCAACATGCTTATTTTGCAGCTGGTCTCAG CCTCAAACAGAAAGCCAACCTCCTCCAATCTCTTACAAGTGCAGGTACATATTTGAATCTAACTTCTATTACCCGTTAAT TAATTCTAAAATCTTCACAAAATCTTTTTATTAGAATTGATGTAGACTTTAGAATCAATCGTACAATAATTTCTAAAATA TTGACAACCATGTTTTTTTTGTGTTTTTCAGGAATACAACCAGATGGGCAATTCTACAGCTTGAGCAGCATCAAAGGAGC TATAAAGGATGGAACTGGGTTTACTCCATACATTGAGTGCAATGTGGACTCATCTGGTAACAGCCAGCTATATCAAGTTT ACTTGTGTGTGGACACTTCTGGTTCTGACTTCATTGAGTGCCCTGTGTTCCCCCATGGCAAATGTGGATCCAGCATTGAA TTCCCAACTTTTTGATTTCTAGGATTGAGTAGAAGAAGTTTGTAAGATAGCCTTATCTGCAATTTCATTTGCTTACATGT TGTCCTTTTGGTATCTTATAGTGATCAACTGTGCCTGGGCTTTTTATTATTCAATGAAAAGTTTATTCTGGCTAACAGTA GGTACTAGATAGTATTGTATTTTCCAAGTTGAGTTATTATATGCAATTGAAAACCAATGGTAATGGGTGTTGTTTATACT TTCAAGCTGC
CDS sequence (LotjaGi2g1v0303000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGTCTAAGGGGTCCAATTTGATTAAGCTTCTGCTACTAGTGAATTTCTCAGTTCTCTGTGTTGCACAGGATTTTGA TTTCTTCTACTTTGTTCAGCAGTGGCCAGGATCATACTGTGACACAGACAAGAGTTGCTGCTACCCAACAACTGGGAAGC CTGATGCAGATTTTGGCATTCATGGTCTGTGGCCTAATTACAACACTGGATCATACCCATCTAACTGTGATTCTAGTAAC CCTTTCAAGCAATCTCAGATATCTGATCTCACAAGCAGTTTGCAAAGGGAATGGCCCACACTAGCATGCCCAAGTGGCAA TGGGATTCAATTCTGGACTCATGAATGGGAAAAACATGGCACTTGCTCAGAGTCAAACCTTAACCAACATGCTTATTTTG CAGCTGGTCTCAGCCTCAAACAGAAAGCCAACCTCCTCCAATCTCTTACAAGTGCAGGAATACAACCAGATGGGCAATTC TACAGCTTGAGCAGCATCAAAGGAGCTATAAAGGATGGAACTGGGTTTACTCCATACATTGAGTGCAATGTGGACTCATC TGGTAACAGCCAGCTATATCAAGTTTACTTGTGTGTGGACACTTCTGGTTCTGACTTCATTGAGTGCCCTGTGTTCCCCC ATGGCAAATGTGGATCCAGCATTGAATTCCCAACTTTTTGA
Protein sequence (LotjaGi2g1v0303000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MESKGSNLIKLLLLVNFSVLCVAQDFDFFYFVQQWPGSYCDTDKSCCYPTTGKPDADFGIHGLWPNYNTGSYPSNCDSSN PFKQSQISDLTSSLQREWPTLACPSGNGIQFWTHEWEKHGTCSESNLNQHAYFAAGLSLKQKANLLQSLTSAGIQPDGQF YSLSSIKGAIKDGTGFTPYIECNVDSSGNSQLYQVYLCVDTSGSDFIECPVFPHGKCGSSIEFPTF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 23 | 23 | - | – | |
| Phobius | 1 | 7 | 7 | - | – | |
| SignalP_EUK | 1 | 23 | 23 | - | – | |
| PANTHER | 4 | 226 | 223 | 1.8E-105 | ||
| PANTHER | 4 | 226 | 223 | 1.8E-105 | – | |
| Phobius | 8 | 15 | 8 | - | – | |
| Phobius | 16 | 23 | 8 | - | – | |
| SUPERFAMILY | 20 | 225 | 206 | 3.4E-72 | ||
| Gene3D | 20 | 226 | 207 | 2.4E-82 | ||
| Phobius | 24 | 226 | 203 | - | – | |
| Pfam | 26 | 209 | 184 | 3.4E-57 | ||
| CDD | 26 | 223 | 198 | 2.44182E-79 | ||
| ProSitePatterns | 58 | 65 | 8 | - | ||
| ProSitePatterns | 111 | 122 | 12 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Molecular function | Ribonuclease T2 activity | Catalysis of the two-stage endonucleolytic cleavage to nucleoside 3'-phosphates and 3'-phosphooligonucleotides with 2',3'-cyclic phosphate intermediates. |
Expression pattern of LotjaGi2g1v0303000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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