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LotjaGi2g1v0312900.1

Overview

Field Value
Gene ID LotjaGi2g1v0312900
Transcript ID LotjaGi2g1v0312900.1
Lotus japonicus genome version Gifu v1.2
Description Germin-like protein subfamily 1 member 1; TAIR: AT1G10460.1 germin-like protein 7; Swiss-Prot: sp|P92998|GL11_ARATH Germin-like protein subfamily 1 member 1; TrEMBL-Plants: tr|I3SED7|I3SED7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0312900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:78783548..78784961) extracted from Lotus japonicus Gifu genome v1.2.

CACCACATACAAACATGTTTGCTCTAGCAAGTGATCAGGCCAACTAATCAGTAAACTTCAATACTGAAGATAAAAACAAG ACAAAAAAAACTTTGACATTTTACCCAACAAAAAATGCACAAGTCTTTTTCAGTTGAATAGAACGTAGTTATCATCTCAT CCTCTTGTGTGGCTTATTCTGACTTGATCCTTTAGCTTGCCTTGCCCATCCCTCATCCTATGCTCTTAAGCTACTCAATC ACCTCACCCCCACAACATACATGTCCAGCTAAATCAACATCAACATCCACCACCTGCTCTTTATTTCTCTCTTTATACAT CTATGTATATATATAACCTGACCTATGCTGCCAAATTCCACACACTATAACCATAACATACACATCTATTGTGTAGCTAA AATGAGAACCCCTTTTCACTCTCTTCCACTATTATTTTTCAGCCTCTCTCTCTTATTGGGCCAATGCAGGCCCGACCCAG ACCCACTTCAAGACTACTGCATTGCAGATAACAAAAACACATTTTTCATCAACGGTGTCCCCTGCATTGACCCAAAACAA GCTTCCTCCTCACACTTTGTCACATCCTCTCTATCCAAGCCCGGCAACACCACTAACAGTTTCGGCTTCAGCGTCACCGC GACCAACACTGTCAACCTTCCTGGGCTTAACACCTTGGGCCTGATCCTGGCCCGTGTTGACATAGCGGCTAATGGGATAG TGCCGCCTCACTCGCACCCACGGGCCTCGGAAGTCATTACTTGCCTCAAGGGCCTGCTTCTCGTGGGCTTTACCGATACT TCTAACCGGGCCTTTACGCAGAACTTGAACCCGGGTGAGTCGTTTGTGTTTCCAAAGGGTTTGATACATTACATTTACAA TCGTGACTCTAAGCAACCGGCATTGGCATTGTCTGGGCTTAATAGTCAGAACCCGGGTGCACAAATTGCTTCTCTTGCTA CTTTTGCTAGCAAGCCTGCAATTCCTGATGAAATTCTCAAGAGGGCTTTTCAAATTAGTGGTCAAGAAGTGGAGATTATT CGTAGAAACCTTGGTGGTTGATTGTGCTGATTGCTATGATGGAGGTTTATTTAATTGTGATTATAGATATACATTTATTA TTTCCTTTTGATGCTGTAATATTTGGGATATTCCTAGGTGGGGGAACATGATGTTAGGCTGGCATATTTAAAAATGAAAT GAAAGAGACAACTAAACTGTCATACTACAATAATCAGGTTGATCAAAATCAAATATTCATCACTATTGAAGTGAAGAAGT AAGCTTCCCCTGCCCCCTTCTTTTCTTGGATTATTATTTGGATTGTTCCATTTAATTTAACGCAATTTAATAGCATGTTT GGATTAACAACTTTTTATCAAAATTAATTTTGAAATTCGAAAGCTATTCACATA
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0312900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCTGCCAAATTCCACACACTATAACCATAACATACACATCTATTGTGTAGCTAAAATGAGAACCCCTTTTCACTCTCT TCCACTATTATTTTTCAGCCTCTCTCTCTTATTGGGCCAATGCAGGCCCGACCCAGACCCACTTCAAGACTACTGCATTG CAGATAACAAAAACACATTTTTCATCAACGGTGTCCCCTGCATTGACCCAAAACAAGCTTCCTCCTCACACTTTGTCACA TCCTCTCTATCCAAGCCCGGCAACACCACTAACAGTTTCGGCTTCAGCGTCACCGCGACCAACACTGTCAACCTTCCTGG GCTTAACACCTTGGGCCTGATCCTGGCCCGTGTTGACATAGCGGCTAATGGGATAGTGCCGCCTCACTCGCACCCACGGG CCTCGGAAGTCATTACTTGCCTCAAGGGCCTGCTTCTCGTGGGCTTTACCGATACTTCTAACCGGGCCTTTACGCAGAAC TTGAACCCGGGTGAGTCGTTTGTGTTTCCAAAGGGTTTGATACATTACATTTACAATCGTGACTCTAAGCAACCGGCATT GGCATTGTCTGGGCTTAATAGTCAGAACCCGGGTGCACAAATTGCTTCTCTTGCTACTTTTGCTAGCAAGCCTGCAATTC CTGATGAAATTCTCAAGAGGGCTTTTCAAATTAGTGGTCAAGAAGTGGAGATTATTCGTAGAAACCTTGGTGGTTGA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0312900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MLPNSTHYNHNIHIYCVAKMRTPFHSLPLLFFSLSLLLGQCRPDPDPLQDYCIADNKNTFFINGVPCIDPKQASSSHFVT SSLSKPGNTTNSFGFSVTATNTVNLPGLNTLGLILARVDIAANGIVPPHSHPRASEVITCLKGLLLVGFTDTSNRAFTQN LNPGESFVFPKGLIHYIYNRDSKQPALALSGLNSQNPGAQIASLATFASKPAIPDEILKRAFQISGQEVEIIRRNLGG
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SignalP_EUK
SignalP-noTM
1 43 43 - –
Phobius
SIGNAL_PEPTIDE
1 43 43 - –
Phobius
SIGNAL_PEPTIDE_N_REGION
1 26 26 - –
PANTHER
PTHR31238:SF5
27 237 211 2.7E-106 –
Phobius
SIGNAL_PEPTIDE_H_REGION
27 38 12 - –
PANTHER
PTHR31238
27 237 211 2.7E-106 –
Phobius
SIGNAL_PEPTIDE_C_REGION
39 43 5 - –
Gene3D
G3DSA:2.60.120.10
43 238 196 4.2E-70
IPR014710
Phobius
NON_CYTOPLASMIC_DOMAIN
44 238 195 - –
SUPERFAMILY
SSF51182
44 234 191 3.65E-38
IPR011051
SMART
SM00835
81 230 150 4.8E-37
IPR006045
Pfam
PF00190
82 229 148 3.3E-43
IPR006045
ProSitePatterns
PS00725
124 137 14 -
IPR019780
PRINTS
PR00325
129 149 21 2.3E-21
IPR001929
PRINTS
PR00325
159 179 21 2.3E-21
IPR001929
PRINTS
PR00325
193 208 16 2.3E-21
IPR001929

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0030145
Molecular function Manganese ion binding Interacting selectively and non-covalently with manganese (Mn) ions.
Subterm of
GO:0045735
Molecular function Nutrient reservoir activity Functions in the storage of nutritious substrates.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0312900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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