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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0319800 |
| Transcript ID | LotjaGi2g1v0319800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | U-box domain-containing protein; TAIR: AT1G10560.1 plant U-box 18; Swiss-Prot: sp|Q9XIJ5|PUB18_ARATH U-box domain-containing protein 18; TrEMBL-Plants: tr|A0A151TGI8|A0A151TGI8_CAJCA U-box domain-containing protein 19; Found in the gene: LotjaGi2g1v0319800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:79466060..79468652) extracted from Lotus japonicus Gifu genome v1.2.
GCACGAGTCCTTTCCGTTTTTCTAGCGCCACGCGTCACTCCCTTGTTATCCTCAAATCACACGTGTCACCATCTCAAAAC CCCAAACTTCACGAAAACCAAATCATCTTCCAACACGTGTCCCATCCTCTTCACTTCCTATAAATAAATACCCGAAACGT ACGTTAAATCAAACAAAACAAATCACACTTATCCACAAGTTCCAAACACAAAAGTCCAACACAACCTTTCCATGATCCGA AAACTAAACGGGTCGGATCGCCGGGTATTGACATTCCCGGTGGTTTATCCCGGCGAAGACATCGCCATCTCCACCCTCCT CACTTCCCTCATCTCCCTCTCCAACTCCATTTCCACTTTCCAACACACCTTCTTCACCGGCAACAAGCGGAACGCGAGAA ATGCCATTCGTTTGACCCAGCTTCTCCAACCTTTCCTCTATGAGATTCGAAACCACAATCCGGATCTTCCCGACCCGGTA GCGCTCTGCTTGTCGGAGCTCCATGTAACCTTCCAGAAGCTTCTCTTCTTGCTGGAAGACTTAACCCGCGAAGGTGCACG GCTGCGGATGCTGATGGAGTCGGAGCGGGTTGCGGCGGAGTTTCGGGTCGTGTCCAGAGCCGTGGCTACAGCTCTGGATA TTTTCCCTTTTGGTGCCGTTGAGGTCTCGGAGGAGGCTGAAGAGCAGGTTTTGCTGCTGATGAAGCAGGCGAGGGAGGCC AGATTTGAGGTTGAGCTTGATGATGAGCGTGCTGTGATGGGTGTTATGTCGATTTTGAACCAGTTTGAGAACCGGGTTGC TCCGGATGAGGGTGAACTGAAGCGGGTTATTGAGTATATTGGGGTTTGCAGGTGGAGTGAGTGCAACAGGGAGGTGAAGT TTTTGGAGGGTGAAATTGGGTTTGAGGGCTTGAATGAAGAAAAAAAGAGGAAGGTGAGTTTTCTGAGTAGTTTGATGGGG TTTATGAGTTACTGCAGATGTGTGGTAATGGAGGTAGTGGATGGTGAAGAAGGTAACAACAAGAAATCTGATGCAAGCAA TGAAAGTGAGATGATCTTGAGTTGTGTTAGCTCAGATGATTTTCTATGTCCAATCTCATTGGAGTTGATGAGAGATCCAG TGACTATAGAAACAGGTCACACCTATGATCGTTCTTCAATTCTCAAATGGTTGAAAAGTGGAAATGCAACATGTCCTAAG ACAGGTAAAAGGCTTAGCAGCACTGAGTTAGTACCCAACTTGGTGCTCCGGAGGCTTGTTCAGCAATATTGCTCTGTCAA TGGCATTCCTTTTGCTGATTCTGGTCGCCGGAACCGTGACATCACGAGGACGGTGCAGCCGGGAAGTGTGGCGGCAGAGG AAGCTATGAAAATGGTTTCTGGTTTTCTCTGTGGAAGAATTGAAAATGGAAGAGGGGAAGAGAAGAACCGTGCAGCCTTT GAAATGAGGCTTCTTTCCAAAACAAGCATTTTTTGTAGGTCTTGTTTGGTAGAAGCTGGTTCTGTCCCTCTTTTGTTGAT TCTGTTGTCATCAAGCGATTCATCAGCACAAGAGAATGCAATTGCAGCACTTCTGAACCTCTCAAAATACTCCAAAAGCA GAGCTCAGATGGTTGAGAATTGGGGATTAGAATTTATTGTAGGAGTTCTAAACAAAGGAGAAAAGATGGAAGCTCGCCAG CACGCTGCAGCTGTGTTGTTCTACCTTGCTTCTTCGAATGCAGAGCACGGGAACAAGATAGGAGAGGAGCCAGAAGCAAT TCCATCACTGATCAGGCTCATCGAAGATGGCGCTGATCGAAGCCAAAAGAATGGCTTGGTGGCAATGTTTGGCCTCCTTA AGCACCCTGAAAATGTTAAGAGGGTAATAACAGCTGGAGCAGTTCCTTTGTTAGTTAACATCTTGAAAACATGTGAGAAA GATGACATTATCACAGACTCCTTAGCAATTCTGGCAACAATTGCAGAGAGAAGTGATGGAACAGCAGCAATCCTTAAAAT TGGAGCCTTGGATGTTGCTGTTGAAATCTTGAGCTCTTCTTCCGCTTCAAGGATGGGGATGGAGCATTGTGTTTCTTTGT TGCTGTGTTTATCACTGAATGGGGGAGGAGATGTGGTTGCTCATTTAGTGAAGAAAGCTTCTCTTATGGGACCTTTGTAT TCTCAACTCAGTGAAGGAACATCGCGAGGAAGCAAGAAGGCTAGTGCTTTGATCAGGGTCCTCCATGATTTTTATGAAAG GAGGTCCTTTGGCTTCAAGGCTCCAGTGATTCCACGTGAACAATTCATTCATGTGTGGTAATGGTAACCCAGTGTATTTT TTTTCCAGCTGGGTATTCTTTTATTTGGTTGATAGTGTGTATGAATTGTAGATACTGTTGTATACTTGTATACTTTTTGT TATTTGTAGTACTCCATGTTAGCTCATGTTTTAAAGAGCTCATGGTTTTATCAGCTTCTGTTTTTAACTATGAAGCTTGT ACAGATTATTGTAGTTGTAATCCCATTTATTTTGTATGAATCAAATAAGATTGAGTATATTAATGAAACCACGCAGAACC CCCAAGTCTCTCACTTTCTCTGAAACCTTTCTC
CDS sequence (LotjaGi2g1v0319800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATCCGAAAACTAAACGGGTCGGATCGCCGGGTATTGACATTCCCGGTGGTTTATCCCGGCGAAGACATCGCCATCTC CACCCTCCTCACTTCCCTCATCTCCCTCTCCAACTCCATTTCCACTTTCCAACACACCTTCTTCACCGGCAACAAGCGGA ACGCGAGAAATGCCATTCGTTTGACCCAGCTTCTCCAACCTTTCCTCTATGAGATTCGAAACCACAATCCGGATCTTCCC GACCCGGTAGCGCTCTGCTTGTCGGAGCTCCATGTAACCTTCCAGAAGCTTCTCTTCTTGCTGGAAGACTTAACCCGCGA AGGTGCACGGCTGCGGATGCTGATGGAGTCGGAGCGGGTTGCGGCGGAGTTTCGGGTCGTGTCCAGAGCCGTGGCTACAG CTCTGGATATTTTCCCTTTTGGTGCCGTTGAGGTCTCGGAGGAGGCTGAAGAGCAGGTTTTGCTGCTGATGAAGCAGGCG AGGGAGGCCAGATTTGAGGTTGAGCTTGATGATGAGCGTGCTGTGATGGGTGTTATGTCGATTTTGAACCAGTTTGAGAA CCGGGTTGCTCCGGATGAGGGTGAACTGAAGCGGGTTATTGAGTATATTGGGGTTTGCAGGTGGAGTGAGTGCAACAGGG AGGTGAAGTTTTTGGAGGGTGAAATTGGGTTTGAGGGCTTGAATGAAGAAAAAAAGAGGAAGGTGAGTTTTCTGAGTAGT TTGATGGGGTTTATGAGTTACTGCAGATGTGTGGTAATGGAGGTAGTGGATGGTGAAGAAGGTAACAACAAGAAATCTGA TGCAAGCAATGAAAGTGAGATGATCTTGAGTTGTGTTAGCTCAGATGATTTTCTATGTCCAATCTCATTGGAGTTGATGA GAGATCCAGTGACTATAGAAACAGGTCACACCTATGATCGTTCTTCAATTCTCAAATGGTTGAAAAGTGGAAATGCAACA TGTCCTAAGACAGGTAAAAGGCTTAGCAGCACTGAGTTAGTACCCAACTTGGTGCTCCGGAGGCTTGTTCAGCAATATTG CTCTGTCAATGGCATTCCTTTTGCTGATTCTGGTCGCCGGAACCGTGACATCACGAGGACGGTGCAGCCGGGAAGTGTGG CGGCAGAGGAAGCTATGAAAATGGTTTCTGGTTTTCTCTGTGGAAGAATTGAAAATGGAAGAGGGGAAGAGAAGAACCGT GCAGCCTTTGAAATGAGGCTTCTTTCCAAAACAAGCATTTTTTGTAGGTCTTGTTTGGTAGAAGCTGGTTCTGTCCCTCT TTTGTTGATTCTGTTGTCATCAAGCGATTCATCAGCACAAGAGAATGCAATTGCAGCACTTCTGAACCTCTCAAAATACT CCAAAAGCAGAGCTCAGATGGTTGAGAATTGGGGATTAGAATTTATTGTAGGAGTTCTAAACAAAGGAGAAAAGATGGAA GCTCGCCAGCACGCTGCAGCTGTGTTGTTCTACCTTGCTTCTTCGAATGCAGAGCACGGGAACAAGATAGGAGAGGAGCC AGAAGCAATTCCATCACTGATCAGGCTCATCGAAGATGGCGCTGATCGAAGCCAAAAGAATGGCTTGGTGGCAATGTTTG GCCTCCTTAAGCACCCTGAAAATGTTAAGAGGGTAATAACAGCTGGAGCAGTTCCTTTGTTAGTTAACATCTTGAAAACA TGTGAGAAAGATGACATTATCACAGACTCCTTAGCAATTCTGGCAACAATTGCAGAGAGAAGTGATGGAACAGCAGCAAT CCTTAAAATTGGAGCCTTGGATGTTGCTGTTGAAATCTTGAGCTCTTCTTCCGCTTCAAGGATGGGGATGGAGCATTGTG TTTCTTTGTTGCTGTGTTTATCACTGAATGGGGGAGGAGATGTGGTTGCTCATTTAGTGAAGAAAGCTTCTCTTATGGGA CCTTTGTATTCTCAACTCAGTGAAGGAACATCGCGAGGAAGCAAGAAGGCTAGTGCTTTGATCAGGGTCCTCCATGATTT TTATGAAAGGAGGTCCTTTGGCTTCAAGGCTCCAGTGATTCCACGTGAACAATTCATTCATGTGTGGTAA
Protein sequence (LotjaGi2g1v0319800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIRKLNGSDRRVLTFPVVYPGEDIAISTLLTSLISLSNSISTFQHTFFTGNKRNARNAIRLTQLLQPFLYEIRNHNPDLP DPVALCLSELHVTFQKLLFLLEDLTREGARLRMLMESERVAAEFRVVSRAVATALDIFPFGAVEVSEEAEEQVLLLMKQA REARFEVELDDERAVMGVMSILNQFENRVAPDEGELKRVIEYIGVCRWSECNREVKFLEGEIGFEGLNEEKKRKVSFLSS LMGFMSYCRCVVMEVVDGEEGNNKKSDASNESEMILSCVSSDDFLCPISLELMRDPVTIETGHTYDRSSILKWLKSGNAT CPKTGKRLSSTELVPNLVLRRLVQQYCSVNGIPFADSGRRNRDITRTVQPGSVAAEEAMKMVSGFLCGRIENGRGEEKNR AAFEMRLLSKTSIFCRSCLVEAGSVPLLLILLSSSDSSAQENAIAALLNLSKYSKSRAQMVENWGLEFIVGVLNKGEKME ARQHAAAVLFYLASSNAEHGNKIGEEPEAIPSLIRLIEDGADRSQKNGLVAMFGLLKHPENVKRVITAGAVPLLVNILKT CEKDDIITDSLAILATIAERSDGTAAILKIGALDVAVEILSSSSASRMGMEHCVSLLLCLSLNGGGDVVAHLVKKASLMG PLYSQLSEGTSRGSKKASALIRVLHDFYERRSFGFKAPVIPREQFIHVW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 9 | 672 | 664 | 1.5E-267 | – | |
| PANTHER | 9 | 672 | 664 | 1.5E-267 | – | |
| ProSiteProfiles | 279 | 353 | 75 | 37.817 | ||
| SUPERFAMILY | 281 | 354 | 74 | 5.44E-28 | – | |
| Gene3D | 281 | 352 | 72 | 1.7E-27 | ||
| Pfam | 282 | 348 | 67 | 2.8E-17 | ||
| SMART | 283 | 346 | 64 | 1.6E-31 | ||
| CDD | 284 | 326 | 43 | 1.39257E-25 | – | |
| Gene3D | 386 | 611 | 226 | 6.4E-32 | ||
| SUPERFAMILY | 392 | 664 | 273 | 1.22E-31 | ||
| SMART | 411 | 452 | 42 | 0.092 | ||
| Pfam | 415 | 451 | 37 | 2.7E-6 | ||
| ProSiteProfiles | 423 | 465 | 43 | 9.992 | ||
| SMART | 453 | 494 | 42 | 20.0 | ||
| SMART | 538 | 579 | 42 | 0.43 | ||
| ProSiteProfiles | 549 | 592 | 44 | 9.257 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ubiquitin-protein transferase activity | Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Protein ubiquitination | The process in which one or more ubiquitin groups are added to a protein. |
Expression pattern of LotjaGi2g1v0319800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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