Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi2g1v0322300.2

Overview

Field Value
Gene ID LotjaGi2g1v0322300
Transcript ID LotjaGi2g1v0322300.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Receptor-like kinase; TAIR: AT1G60800.2 NSP-interacting kinase 3; Swiss-Prot: sp|Q93ZS4|NIK3_ARATH Protein NSP-INTERACTING KINASE 3; TrEMBL-Plants: tr|A0A0B2PZL4|A0A0B2PZL4_GLYSO Protein NSP-INTERACTING KINASE 3; Found in the gene: LotjaGi2g1v0322300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:79709786..79713670) extracted from Lotus japonicus Gifu genome v1.2.

GTAGCTCTGATAAAGATAAAGGATGAGTTGAATGATCCTCACAATGTCCTGGAGAATTGGGATATTAATTCAGTGGATCC ATGCAGCTGGGGCATGATTACTTGTTCTCCAGATGGCTTTGTTTCTGCATTGTGAGTTGTTTAGATTTTATATGTTTTTA AAGGTGGCAAACAAGTTTCAAAAGGTCTTGAATATAAAATGAACCAAAAACACTTTTGCTAATTTGATTTTCACTGAAAG GAAGTTCTTACTTGCAGGGGATTGCCTAGTCAGAATTTGTCTGGGACACTGTCTCCTTGGATTGGAAACCTTACTAACTT ACAATATGTGTAAGTCTATGTTAACTTTTATAAAGATCCTTCATATATGGGTTTTGCATCAGTGCTTTTATTCTTATAGT TCCACTACATAGAGTGAAGACTTCCCAAGGAGTTATAAGCCAAGTGCAGGCCAACCACATTGATGCTTAAATAATTGTAC CAATATGCAGTTATCTTCAGAACAATTCCATTTCTGGTCAGATTCCAGCAGCAATTGGAAGCCTAGAAAAGCTTCTGACA CTTGATCTCTCCAATAATGCATTTAGTGGTGACATACCTAATTCTTTGGGAGACCTCAAGAACCTGAATTATTTGTAAGT TACAAAAGCATATACATCATGCAGATTGTTAAATTGTTAATCATTGCAGCTATTGTGAGTTTGTTACTTGCTTCAGTGGT GACTTATGAGTTATGAAATTGTGTTCCTCATTCTATTTAAATTGTCTCATGTGCATGCTAGGCGGTTAAATAATAACAGC CTTACAGGAGCCTGCCCTCAGTCTCTTAGCAACATTGGAGGTCTAACCCTTGTGTATGTCTTTGTTATCTATTTGCTCCA TTGTTTTCTTTTCTTTCTCTTTTTCTTTTTCCTGTTGTATTTCTCTTACACCTCTCAAGGGAAGATTTAAAGTTTTGTTT TCTCTCTTAAAAAATGATATATTAACTATTATGAACTGAAAATACATGTAGGGACCTCTCCTACAACAATCTGAATGGTT CTTTGCCACGAATATCGGCAAGAACGTTAAAGTAAGTTCATCTTGGGTTTCCTAATCTTTAATTCCATATTCAAGTTTAC TTCAAAGTGGTGTGGTTAATCTCTTGCTCAATTTTTCACTTCAGGATTGTGGGTAACCCATTAATTTGTGGTCCAAAAGC AAACAATTGTTCTACTGTTTTACCAGAGCCACTTTCCTTCCCACCAGATGCACTCAGAGGTATTAATAACATGTATCTTT GCCTCTACTTTCAATTTTCACATTTCTAACAATTGTTTGACATGCTTAGATGTGATGATTTTGACTTTCTAGCCCAATCA GACTCTGGTAAAAAAAGCTATCATGTGGCACTTGCTTTTGGTGCAAGTTTTGGTGCTGCTTTTGTCATTGTGATTATAGT TGGGTTTCTTGCTTGGTGGCGATATAGACACAACAAACAGATATTCTTTGATGTTAATGGTTAGTCCATGCTAAAAATTT CCCTACTTTCCTTCTATACTTCTATTTCCTTAAATCGCTGCATTTTTTTAACTCACATGTTCAAATGCTTGTTTCTTTTC ATGGTTGACATTGTGAAAGTTAATTGACATGTTCTAATTTCACCTAAGACTAGTCTAAGTCACCTCCAATGGATCTATGT ATGCTTCTAAGTTCTAACTCAAGCAATTCATTTTATTATTCCTCGACTATTTTTAATTAATTTCAACGATTTTAAGCTCA TTAAAGCAACTGTAAAACTTATCAAGCATGAAATGAAGTATGAATATGAGATCTTTTTTCCTAGTGATTTTTTTTTTCAA CATGAGCAATTAAATTATCCCAGTTTTGTTTTTGCTTGAAAAAATGGATGGGAGTCCTATATGTAAAATTTAAATTGGAG TACACTTAATCTATAGGAGGGGTAGAATTTGAGAATTAACATTGTAGCTGGTGGTTTTTTAAAATCTTAATCCAAGTATC AAGTTTGCATTATCATGCCATGCTATCACTGAGCACACCACTGATATGGATTCACTCCCTACATGCCTTGTAAGCATATG TTGAGTTCCCACAACATGAATTCTAAAGTCCTCGTTTCCTTATGTCTTTGTTTGGTATTTAATTTATACAGGAGTAGTGT TGTTGTGGGTATGTTTTTTTCTTTTATTTGGATCCTCTTTTCTATGATTTCTCAGTAAAAGTCTGTTATCTGGCAGAGCA TTACGACCCAGAGGTGCGCCTTGTTGGTCACTTAAAAAGGTTTTCATTCAAAGAACTACGAGCTGCGACAGACCATTTCA ACTCAAGGAACATTCTGGGAAGAGGTGGCTTTGGAATAGTTTACAAGGCGAGCTTGAATGATGGGTCTGTTGTGGCTGTT AAAAGGTTGAAGGACTATAGTGCAGCAGCTGGTGAGATCCAATTTCAAACAGAAGTCGAGACGATAAGTTTGGCTGTCCA CCGGAATCTTCTGAGGCTTAAAGGGTTTTGTAGCACTCAGAATGAAAGGCTCCTCGTTTATCCCTATATGTCTAATGGCA GTGTTGCCTCTAGATTAAAAGGTAAGCTCATTTCTTCTATGAAGGTGTCTCTCTTTTCAGTTTTTAGTTCTCCTTTACCG TATCTTTGTTTTGTGTGTGTTTTTCTAAGCAAACATTTTCTTGATCGGCTTATGATTGAGATTGATAATTATACTCAAGT TCCTCAAGACCATTTGAAAATGTACCTTACTCTGGCTTTGGTTTTGGGTTTATGTACCAGATCATATTCATGGTAGGCCA GCTTTAGATTGGACAAGGCGGAAGAGAATAGCTTTAGGTACAGCACGAGGGTTGGTTTATTTGCACGAGCAATGTGACCC TAAAATTATCCACCGTGATGTCAAAGCAGCCAACATATTGCTAGATGAAGACTTTGAAGCAGTTGTTGGTGATTTTGGTT TAGCTAAGCTTTTGGATCACAGAGATTCCCATGTGACCACTGCGGTGCGTGGCACCGTTGGTCATATTGCTCCGGAGTAC CTGTCTACCGGCCAATCATCGGAAAAGACTGACGTGTTTGGATTTGGAATCTTGCTGCTTTAGCTGATCACAGGTCATAA GGCTCTAGATTTTGGGCGAGAAACAAACCAGAAAGGTGTCATGCTAGATTGGGTACTCTCTTTTTCTAGACTTCCACTCT TCTTAACATCTTGCTTCTTTTTCAGTTAGCATATGAAGCTTTTACTAGCTATAGAAGCTTTTACTCGCTATAGGCTTTCA GTTAGCATATGAAGTTCTTACTAGCTCTAGAAGTATATTTATTCCATCAACTTAGGTTGAATGGTTCGTTGGCGCTCTGA ATAATTTTTCTCTTATGTGGCATAGCTTGTCTTCAGAGAAATTTAACTCAAGTAGTTTTCTTCTTAAATGGCACTGGGGA TTAAGAAATATTGCCACTTAACTGCTATTTATTTCTTGCTTTAGGTAATAGGCTTAAAAAATAAGTTCTCTTTCGCCTCA ATCCCCAATCTTTTGTATAATGTGAATCAAACAATTTTCAGGTTAAGAAGCTCCACCAAGAGGGAAGATTAAGTCAAATG GCAGATAAAGTGCTGAAGGGAAATTTTGACCTTGTTGAATTGGAAGAAATGGTTCAGGTTGCACTCTTGTGTACACAGTT TAATCCTACAACCCGCCCCAAAATGTCTGAAGTATTAAAGATGTTGGAAGGGGATGGCTTAGCTGAGAGATGGGAGGCCT CACAGTCACAGAGGATTGAAACACCAAGGTTCCGGTCTTGTGAAAATCCGCCTCAAAGATACGCAGATTTAATAGAAGAA TCATCACTCATAGTAGAAGCCATGGAGCTTTCTGGCCCTAGGTGA
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0322300.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGATTACTTGTTCTCCAGATGGCTTTGTTTCTGCATTGGGATTGCCTAGTCAGAATTTGTCTGGGACACTGTCTCCTTG GATTGGAAACCTTACTAACTTACAATATGTTTATCTTCAGAACAATTCCATTTCTGGTCAGATTCCAGCAGCAATTGGAA GCCTAGAAAAGCTTCTGACACTTGATCTCTCCAATAATGCATTTAGTGGTGACATACCTAATTCTTTGGGAGACCTCAAG AACCTGAATTATTTGCGGTTAAATAATAACAGCCTTACAGGAGCCTGCCCTCAGTCTCTTAGCAACATTGGAGGTCTAAC CCTTGTGGACCTCTCCTACAACAATCTGAATGGTTCTTTGCCACGAATATCGGCAAGAACGTTAAAGATTGTGGGTAACC CATTAATTTGTGGTCCAAAAGCAAACAATTGTTCTACTGTTTTACCAGAGCCACTTTCCTTCCCACCAGATGCACTCAGA GCCCAATCAGACTCTGGTAAAAAAAGCTATCATGTGGCACTTGCTTTTGGTGCAAGTTTTGGTGCTGCTTTTGTCATTGT GATTATAGTTGGGTTTCTTGCTTGGTGGCGATATAGACACAACAAACAGATATTCTTTGATGTTAATGAGCATTACGACC CAGAGGTGCGCCTTGTTGGTCACTTAAAAAGGTTTTCATTCAAAGAACTACGAGCTGCGACAGACCATTTCAACTCAAGG AACATTCTGGGAAGAGGTGGCTTTGGAATAGTTTACAAGGCGAGCTTGAATGATGGGTCTGTTGTGGCTGTTAAAAGGTT GAAGGACTATAGTGCAGCAGCTGGTGAGATCCAATTTCAAACAGAAGTCGAGACGATAAGTTTGGCTGTCCACCGGAATC TTCTGAGGCTTAAAGGGTTTTGTAGCACTCAGAATGAAAGGCTCCTCGTTTATCCCTATATGTCTAATGGCAGTGTTGCC TCTAGATTAAAAGATCATATTCATGGTAGGCCAGCTTTAGATTGGACAAGGCGGAAGAGAATAGCTTTAGGTACAGCACG AGGGTTGGTTTATTTGCACGAGCAATGTGACCCTAAAATTATCCACCGTGATGTCAAAGCAGCCAACATATTGCTAGATG AAGACTTTGAAGCAGTTGTTGGTGATTTTGGTTTAGCTAAGCTTTTGGATCACAGAGATTCCCATGTGACCACTGCGGTG CGTGGCACCGTTGGTCATATTGCTCCGGAGTACCTGTCTACCGGCCAATCATCGGAAAAGACTGACGTGTTTGGATTTGG AATCTTGCTGCTTTAG
Download CDS Sequence

Protein sequence (LotjaGi2g1v0322300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MITCSPDGFVSALGLPSQNLSGTLSPWIGNLTNLQYVYLQNNSISGQIPAAIGSLEKLLTLDLSNNAFSGDIPNSLGDLK NLNYLRLNNNSLTGACPQSLSNIGGLTLVDLSYNNLNGSLPRISARTLKIVGNPLICGPKANNCSTVLPEPLSFPPDALR AQSDSGKKSYHVALAFGASFGAAFVIVIIVGFLAWWRYRHNKQIFFDVNEHYDPEVRLVGHLKRFSFKELRAATDHFNSR NILGRGGFGIVYKASLNDGSVVAVKRLKDYSAAAGEIQFQTEVETISLAVHRNLLRLKGFCSTQNERLLVYPYMSNGSVA SRLKDHIHGRPALDWTRRKRIALGTARGLVYLHEQCDPKIIHRDVKAANILLDEDFEAVVGDFGLAKLLDHRDSHVTTAV RGTVGHIAPEYLSTGQSSEKTDVFGFGILLL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
NON_CYTOPLASMIC_DOMAIN
1 169 169 - –
Gene3D
G3DSA:3.80.10.10
1 147 147 4.2E-41
IPR032675
SUPERFAMILY
SSF52058
10 137 128 2.04E-28 –
Pfam
PF13855
32 92 61 5.0E-9
IPR001611
PANTHER
PTHR27001
53 431 379 1.6E-173 –
PANTHER
PTHR27001:SF49
53 431 379 1.6E-173 –
Phobius
TRANSMEMBRANE
170 196 27 - –
TMHMM
TMhelix
174 196 23 - –
Phobius
CYTOPLASMIC_DOMAIN
197 431 235 - –
Gene3D
G3DSA:3.30.200.20
205 313 109 2.2E-34 –
SUPERFAMILY
SSF56112
217 431 215 2.73E-64
IPR011009
ProSiteProfiles
PS50011
237 431 195 34.817
IPR000719
SMART
SM00220
237 431 195 1.3E-11
IPR000719
Pfam
PF00069
239 430 192 4.1E-39
IPR000719
ProSitePatterns
PS00107
243 265 23 -
IPR017441
Gene3D
G3DSA:1.10.510.10
314 431 118 2.7E-40 –
ProSitePatterns
PS00108
360 372 13 -
IPR008271

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004672
Molecular function Protein kinase activity Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP.
Subterm of
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0006468
Biological process Protein phosphorylation The process of introducing a phosphate group on to a protein.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0322300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…