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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0328600 |
| Transcript ID | LotjaGi2g1v0328600.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT5G65560.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560; TrEMBL-Plants: tr|G7JWB5|G7JWB5_MEDTR PPR containing plant-like protein; Found in the gene: LotjaGi2g1v0328600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:80401531..80406127) extracted from Lotus japonicus Gifu genome v1.2.
ATCGTGGGCTCGTGGCAATTTAATCAGAGACCAGAACCCGCGGCTATGAACGAACCACGATTTCCAAACCCTGCTTCATC TCTCTCACACAACACTGCAATCACAGTTTGATCATCTTCCAACAACCAATGCAATTGTCACAGAGAAAGCATAAGCTCCC ACAGTGACCAACCCTCGTTCATGGCTTCTAGATGAGAAAACTCACACCCTTTTCCACTCTTCTCCATCACAACAACAGCC TCCTTAAACCCCTTAAACCCTTCTCTTCGTCTTCACTGCAACCCGATCTCCCTTCTCAGATCTTCACCATCCTCTCTCGC CCCCAATGGCGAAAAGATCCCACCGTTAACACCCTTATCCCCTCTCTCACCACAACCCACCTCTCCTCCCTCTTCAACCT CAACCCTCACCCTCTCACCGCCTTGAACTTCTTCCGCTGGATCCGCCGCCAACACGGCTTCACCCACACCGTTCGTTCCC ACGAGCCGCTTCTCCTCCTCCTTGTGCGTAATGGGTTGCTTCGTGCTGCTGAGAATGTTCGAAACTCCATGATAAAGTCA TCTCTCTCCCCCCATGATGCGAGGTTTGTGCTGAATCTTTTGCGCCGTATGAACAATAGTGATGATGAGAAGCTAGCTTT TAAGCTTTCTGTTACCTCGTATAATAGGCTTCTCATGTGCTTGTCGCGTTTTGCTATGGTTGATGAATTGGGGAGTTTGT ATAAGGAGATGTTGGATGGCGGGGTTGTTCCGAATTTGATAACGCTGAATACCATGTTGAATGCTTATTGCAAATTGGGG AACATGGTTGTGGGGGAGCTTTATTTTTCTAGGTTGCTAATAGGTGGTTTTTGTCCTGATGCATTCACTTACACTTCGTT GATTTTGGGTTACTGTAAAAATCATGCTGTGGATAGAGCTTGTAGAGTGTTTGAGCTTATGCCGCAGCGAGGCTGCCCGA GGAACGAGGTTTCGTATACTAATCTTATTCATGGGCTCTGTGAAGCTGGGCGGCTCGATGAGGCTCTCGAGTTGTTCTTG CAAATGAAGGGGGATAAGTGTTTTCCCACGGTTCGAACTTATACTGTTCTCATAGGGGCGCTCTGTGAGTCGGGTAAGGA GGTGAAGGCTTTGAAATTTTTTGAGGAGATGGTGGATAGTGGTTGTGAGCCGAATGTTTATACTTACACTGTGTTGATTG ATTACTTCTGCAAACAGAGCAGGATGGATGAGGGGATGGAAATGTTAAACAAAATGCTGGAGAAAGGCTTGGCTTCTAGT GCTGTTCCGTACAATGCCTTGATTGCTGGGTATTGTAAGCGTGGGATGATGGATGACGCCATGAATGTTTTGGTTATGAT GGAGTCGAATAAAGTTTGTCCAAATGCTCGTACACTTAATGAACTGATTTGTGGGTTTTGTGGGAACAAAAGCATGGACA GGGCAATGGCATTGCTTAATAAAATGTTTGAAAAAAAGCTGTCTCCGGACCTCATCACGTATAACACATTAATCCACGGG CTGTACAAAGCAGGTGTTGTAGATAGTGCTTGCCGATTGTTTGATTTGATGATTAAAGATGGTCACATTCCTGATCTGTG GACCTTTAGTGCTTTGATAGATGGCCTCTGTAGAACGGGTAAGATAGAGAAAGCTCATCAGATCTTTGAGTCTCTGAAGG AAAAACATGTCAAAGCAAATGAACATATATATACAGCCTTGATTGATGGATACTGCAAGGCTGGGAAAATTCAAGATGCC CATTTATTATTTAAAGGGATGCTTGCAGAGGATTGTTTGCCAAACTCTATCACGTTTAATGTATTGATAGATGGCATGCG CAAAGAGGGGAAAATGCAAGATGCAATGTCGTTGGTGGATGACATGGTAAAGTTTGATGTGGTGCCTACTGTTCGCACAT ATACAATTCTCATTGAGGAAATGCTGAAGGGAGGTGACTTTGACCGTGCTAATAGGATCCTCAACCAAATGATTTCAATT GGATATCAGCCTAACGTCGTCACATATACTGCATTTATCAAGGCATATTGCTGCCAAGGAAGGTTAGAGGATGCTGAAGA GATGGTGGCCAAGATTATGAAAGAAGGCATAGTACTTGACTCCTTGATCTATGATTTATTAATTAATGCATATGGATGTG TGGGACAACTAGATGGTGCATTTAGTGTTCTCAAACGCATGTTTGATACTGGCTGTGAGCCTTCGCGCCAAACTTTTTCC ATCCTAATGAAGCATCTAATAAATGAAAAACATAAGATGGAAGGGAGCAATCCTGTTTCTCTGGATTTAAATTCAACTAA TATCTCAGTTGACTATGCAGATATATGGAAGATAACTGACTATGAAATCACAACTATGCTCCTTGAGAAAATGGTGGAAT ATGACTGTGTGCCTAATGTAAACACTTATAGCAGGCTTATTAAAGGATTTTGCAAGGTGGAACGCATGGACATAGCCTTC AGATTGTTCAATCATATGAGAGAAAGTGGAATTTCTCCATCTGAGAATAATCATAATTCTCTTCTTAGTGGTTGCTGCAA GTTGGGAATGCATGGGGAGGCATTGGGATTGTTAGATTCTATGATGGAGTGTAGTCATTTGGCTCATCTAGAATCCTACA AGTTTCTCATTTGTGGGTTATTTGAACAAGGGGACAAAGAGAAGGCTAAAGTAGTTTTTCATAGTTTACTAAGTCGTGGG TACAATTACGATGAAGTGGCTTGGAAAGTTCTAATTGATGGCTTAGCTAAGAGGGGGTGTGTGGATCAATGCTCAGAATT GTTGAATATTATGGAGAAAAATGGTTGCTGTTTACATTCTGAGACTTGCTCTATGTTAAATCAGGAACTAAATGGAAATT AACAAATTGATTGTTTATTTTACCCTGGAATGGAACAGGGGAAAAGAGGCTTCCCATTATTATTATCATCAGTTTTTTTT GATGAATCTTGTTAAGGTTGTACAGATGGAAGAACACCTGCAATTTTGAAATACACTCTGAATACACTTACTCTATGTCT CTGTCTAAACTGGTGAGCTGGGATCAGCTCTTTTTGCGGTAATACTTAACAGTCACAGACAAGTCTAATCACACGGAGAG AGAGCAATCAGCAGAAGATCAAGAGGCGAGTGACTATATAAATTCTTGAGAGAGGGCAATCAGCAGAAGATCAAGAGGCA AGTAACTATATAAATTCTTGCTCAAATTGCATTTCTTCATTTTTATTATCTAATGCCTCATTTTATGCTTTCCAATTTTT TATTTCACAGCTTGTCTCAGACTGTTTGATGAATTATATTTGATTTGATAATTTCACCTGAATTATTTGCTACTTTACTT GAGTCATATTATGCCTTTCAAGTTTCTATTAAATATGAAATTGGTTGAACTCTTAGTGTTAATAAATACACACTAGAGTT CCAACTTCCAAGGTATTGATCATCATTGGAAATGAATGGGATTTTTTTATCAAGAAATTTATCAGTAATTTTATGCTGAG CATAACACTTTGGCCATTCATCGTATAATTGGGTTTGGGGGTTGTTGTTTATCATATTGGTGTATTTGCTAGTAGTGTTT GGGGGTAGGGATCGTTGTAAAGTTGGGTTTAAATTAGTGAGTTTATATGGCCATATTACATAAAAAAACTTGGATTTGTA TTAGATCTCTTGGTTCAACATTGTGATATATTTTTATGTAGTTAATGCTAATGGTTGAGACTGAAAAACTGTTTATTGAT TGAGAAGTACTTAAGTAGCATTTTGTCACAAAGGGTTGAGCTTTGTGCTTTCTATTCTAGTGCTGTGAATGAGTAAACTA ATATCTGTTGTCTTAAGTGAATTTGGTGATTGGCTTATCAATGTGGGTGTCTATTGAATTATCTCTCTAAAGAAACTCGT TTGCCCAAAAAAGCAACTGAGTGATCTGTAACCCTTACTTGAACACCACTAATTTTCTCTTCTATTTTTCTCACAGGTGT TCTAGGGGCAACTAAGTCTATTCTTTGCAACTCGTGACCCAAGCTGAAGGCTGAAGCTGTATAAGACAACCTAGAGAGTT TACTAGTCAATGTCTTTTGGAACCGCTAAATCTATGGTCGTTATAGATTATAGTCAAAGATTCATTGGTATTAGGAGAAT TCATTTTTTTTTTGGTCATAGGAGAATTCATTTCAAATGTAAGTAATTGATGTAGTATTTAGGAACCTAGTATCCTACTA CTGTCTTGGAAGGATTGTTCTAAAGCTTCCGAATTTTCTTCGCAATTTTGGCAATGTGATTGGGGAGCTGACGAAAGAAG ATACAAGTTCACAGGAACAGCTAAAGAAATTAAATTGGCTAGAAATTAAATGAAATATTATGCTTTCCAGACTTTTGCCT CTTGCAAGCAATACTTCAGTAGCGGTAGGTACATTTCTTCTACTCCCATTAGTATGTGTTCATGCTTGTGATTCTCGTTC TTTTTCAGTGTATATATTCTTGGAGCTTAGGATGCTCGGAAGATATGCTGTATGTACACGTTTGTGGCAGCTCTGCCTAC AAATAGGAATGCCTATATACGCGTACATATAAATCAA
CDS sequence (LotjaGi2g1v0328600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGAAAACTCACACCCTTTTCCACTCTTCTCCATCACAACAACAGCCTCCTTAAACCCCTTAAACCCTTCTCTTCGTC TTCACTGCAACCCGATCTCCCTTCTCAGATCTTCACCATCCTCTCTCGCCCCCAATGGCGAAAAGATCCCACCGTTAACA CCCTTATCCCCTCTCTCACCACAACCCACCTCTCCTCCCTCTTCAACCTCAACCCTCACCCTCTCACCGCCTTGAACTTC TTCCGCTGGATCCGCCGCCAACACGGCTTCACCCACACCGTTCGTTCCCACGAGCCGCTTCTCCTCCTCCTTGTGCGTAA TGGGTTGCTTCGTGCTGCTGAGAATGTTCGAAACTCCATGATAAAGTCATCTCTCTCCCCCCATGATGCGAGGTTTGTGC TGAATCTTTTGCGCCGTATGAACAATAGTGATGATGAGAAGCTAGCTTTTAAGCTTTCTGTTACCTCGTATAATAGGCTT CTCATGTGCTTGTCGCGTTTTGCTATGGTTGATGAATTGGGGAGTTTGTATAAGGAGATGTTGGATGGCGGGGTTGTTCC GAATTTGATAACGCTGAATACCATGTTGAATGCTTATTGCAAATTGGGGAACATGGTTGTGGGGGAGCTTTATTTTTCTA GGTTGCTAATAGGTGGTTTTTGTCCTGATGCATTCACTTACACTTCGTTGATTTTGGGTTACTGTAAAAATCATGCTGTG GATAGAGCTTGTAGAGTGTTTGAGCTTATGCCGCAGCGAGGCTGCCCGAGGAACGAGGTTTCGTATACTAATCTTATTCA TGGGCTCTGTGAAGCTGGGCGGCTCGATGAGGCTCTCGAGTTGTTCTTGCAAATGAAGGGGGATAAGTGTTTTCCCACGG TTCGAACTTATACTGTTCTCATAGGGGCGCTCTGTGAGTCGGGTAAGGAGGTGAAGGCTTTGAAATTTTTTGAGGAGATG GTGGATAGTGGTTGTGAGCCGAATGTTTATACTTACACTGTGTTGATTGATTACTTCTGCAAACAGAGCAGGATGGATGA GGGGATGGAAATGTTAAACAAAATGCTGGAGAAAGGCTTGGCTTCTAGTGCTGTTCCGTACAATGCCTTGATTGCTGGGT ATTGTAAGCGTGGGATGATGGATGACGCCATGAATGTTTTGGTTATGATGGAGTCGAATAAAGTTTGTCCAAATGCTCGT ACACTTAATGAACTGATTTGTGGGTTTTGTGGGAACAAAAGCATGGACAGGGCAATGGCATTGCTTAATAAAATGTTTGA AAAAAAGCTGTCTCCGGACCTCATCACGTATAACACATTAATCCACGGGCTGTACAAAGCAGGTGTTGTAGATAGTGCTT GCCGATTGTTTGATTTGATGATTAAAGATGGTCACATTCCTGATCTGTGGACCTTTAGTGCTTTGATAGATGGCCTCTGT AGAACGGGTAAGATAGAGAAAGCTCATCAGATCTTTGAGTCTCTGAAGGAAAAACATGTCAAAGCAAATGAACATATATA TACAGCCTTGATTGATGGATACTGCAAGGCTGGGAAAATTCAAGATGCCCATTTATTATTTAAAGGGATGCTTGCAGAGG ATTGTTTGCCAAACTCTATCACGTTTAATGTATTGATAGATGGCATGCGCAAAGAGGGGAAAATGCAAGATGCAATGTCG TTGGTGGATGACATGGTAAAGTTTGATGTGGTGCCTACTGTTCGCACATATACAATTCTCATTGAGGAAATGCTGAAGGG AGGTGACTTTGACCGTGCTAATAGGATCCTCAACCAAATGATTTCAATTGGATATCAGCCTAACGTCGTCACATATACTG CATTTATCAAGGCATATTGCTGCCAAGGAAGGTTAGAGGATGCTGAAGAGATGGTGGCCAAGATTATGAAAGAAGGCATA GTACTTGACTCCTTGATCTATGATTTATTAATTAATGCATATGGATGTGTGGGACAACTAGATGGTGCATTTAGTGTTCT CAAACGCATGTTTGATACTGGCTGTGAGCCTTCGCGCCAAACTTTTTCCATCCTAATGAAGCATCTAATAAATGAAAAAC ATAAGATGGAAGGGAGCAATCCTGTTTCTCTGGATTTAAATTCAACTAATATCTCAGTTGACTATGCAGATATATGGAAG ATAACTGACTATGAAATCACAACTATGCTCCTTGAGAAAATGGTGGAATATGACTGTGTGCCTAATGTAAACACTTATAG CAGGCTTATTAAAGGATTTTGCAAGGTGGAACGCATGGACATAGCCTTCAGATTGTTCAATCATATGAGAGAAAGTGGAA TTTCTCCATCTGAGAATAATCATAATTCTCTTCTTAGTGGTTGCTGCAAGTTGGGAATGCATGGGGAGGCATTGGGATTG TTAGATTCTATGATGGAGTGTAGTCATTTGGCTCATCTAGAATCCTACAAGTTTCTCATTTGTGGGTTATTTGAACAAGG GGACAAAGAGAAGGCTAAAGTAGTTTTTCATAGTTTACTAAGTCGTGGGTACAATTACGATGAAGTGGCTTGGAAAGTTC TAATTGATGGCTTAGCTAAGAGGGGGTGTGTGGATCAATGCTCAGAATTGTTGAATATTATGGAGAAAAATGGTTGCTGT TTACATTCTGAGACTTGCTCTATGTTAAATCAGGAACTAAATGGAAATTAA
Protein sequence (LotjaGi2g1v0328600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRKLTPFSTLLHHNNSLLKPLKPFSSSSLQPDLPSQIFTILSRPQWRKDPTVNTLIPSLTTTHLSSLFNLNPHPLTALNF FRWIRRQHGFTHTVRSHEPLLLLLVRNGLLRAAENVRNSMIKSSLSPHDARFVLNLLRRMNNSDDEKLAFKLSVTSYNRL LMCLSRFAMVDELGSLYKEMLDGGVVPNLITLNTMLNAYCKLGNMVVGELYFSRLLIGGFCPDAFTYTSLILGYCKNHAV DRACRVFELMPQRGCPRNEVSYTNLIHGLCEAGRLDEALELFLQMKGDKCFPTVRTYTVLIGALCESGKEVKALKFFEEM VDSGCEPNVYTYTVLIDYFCKQSRMDEGMEMLNKMLEKGLASSAVPYNALIAGYCKRGMMDDAMNVLVMMESNKVCPNAR TLNELICGFCGNKSMDRAMALLNKMFEKKLSPDLITYNTLIHGLYKAGVVDSACRLFDLMIKDGHIPDLWTFSALIDGLC RTGKIEKAHQIFESLKEKHVKANEHIYTALIDGYCKAGKIQDAHLLFKGMLAEDCLPNSITFNVLIDGMRKEGKMQDAMS LVDDMVKFDVVPTVRTYTILIEEMLKGGDFDRANRILNQMISIGYQPNVVTYTAFIKAYCCQGRLEDAEEMVAKIMKEGI VLDSLIYDLLINAYGCVGQLDGAFSVLKRMFDTGCEPSRQTFSILMKHLINEKHKMEGSNPVSLDLNSTNISVDYADIWK ITDYEITTMLLEKMVEYDCVPNVNTYSRLIKGFCKVERMDIAFRLFNHMRESGISPSENNHNSLLSGCCKLGMHGEALGL LDSMMECSHLAHLESYKFLICGLFEQGDKEKAKVVFHSLLSRGYNYDEVAWKVLIDGLAKRGCVDQCSELLNIMEKNGCC LHSETCSMLNQELNGN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 50 | 206 | 157 | 1.0E-19 | ||
| PANTHER | 62 | 298 | 237 | 3.1E-166 | – | |
| ProSiteProfiles | 93 | 127 | 35 | 7.333 | ||
| Pfam | 153 | 201 | 49 | 1.1E-7 | ||
| ProSiteProfiles | 153 | 187 | 35 | 9.821 | ||
| ProSiteProfiles | 188 | 222 | 35 | 9.438 | ||
| TIGRFAM | 190 | 224 | 35 | 7.9E-5 | ||
| Gene3D | 207 | 285 | 79 | 5.9E-23 | ||
| Pfam | 219 | 250 | 32 | 1.2E-9 | ||
| ProSiteProfiles | 223 | 257 | 35 | 11.893 | ||
| TIGRFAM | 225 | 258 | 34 | 2.0E-6 | ||
| SUPERFAMILY | 234 | 534 | 301 | 6.83E-6 | ||
| ProSiteProfiles | 258 | 292 | 35 | 13.033 | ||
| Pfam | 258 | 305 | 48 | 4.1E-15 | ||
| TIGRFAM | 260 | 293 | 34 | 2.7E-9 | ||
| Gene3D | 286 | 357 | 72 | 1.4E-23 | ||
| PANTHER | 292 | 425 | 134 | 3.1E-166 | – | |
| ProSiteProfiles | 293 | 327 | 35 | 12.693 | ||
| TIGRFAM | 296 | 329 | 34 | 1.3E-9 | ||
| Pfam | 324 | 355 | 32 | 7.1E-11 | ||
| ProSiteProfiles | 328 | 362 | 35 | 12.003 | ||
| TIGRFAM | 330 | 360 | 31 | 1.1E-7 | ||
| Gene3D | 358 | 427 | 70 | 1.6E-15 | ||
| ProSiteProfiles | 363 | 397 | 35 | 11.915 | ||
| Pfam | 364 | 410 | 47 | 1.3E-10 | ||
| TIGRFAM | 367 | 399 | 33 | 7.7E-9 | ||
| ProSiteProfiles | 398 | 432 | 35 | 10.216 | ||
| TIGRFAM | 401 | 433 | 33 | 3.8E-5 | ||
| PANTHER | 414 | 567 | 154 | 3.1E-166 | – | |
| Gene3D | 428 | 496 | 69 | 2.6E-21 | ||
| Pfam | 432 | 481 | 50 | 3.3E-15 | ||
| ProSiteProfiles | 433 | 467 | 35 | 12.43 | ||
| TIGRFAM | 435 | 468 | 34 | 2.2E-9 | ||
| ProSiteProfiles | 468 | 502 | 35 | 11.762 | ||
| TIGRFAM | 471 | 503 | 33 | 4.2E-7 | ||
| Gene3D | 497 | 567 | 71 | 1.4E-20 | ||
| Pfam | 503 | 549 | 47 | 8.0E-13 | ||
| ProSiteProfiles | 503 | 537 | 35 | 12.079 | ||
| TIGRFAM | 506 | 538 | 33 | 1.8E-9 | ||
| PANTHER | 526 | 693 | 168 | 3.1E-166 | – | |
| ProSiteProfiles | 538 | 572 | 35 | 11.564 | ||
| TIGRFAM | 540 | 574 | 35 | 3.0E-7 | ||
| Gene3D | 568 | 635 | 68 | 3.8E-17 | ||
| ProSiteProfiles | 573 | 607 | 35 | 10.578 | ||
| TIGRFAM | 576 | 608 | 33 | 6.0E-4 | ||
| Pfam | 604 | 632 | 29 | 6.8E-10 | ||
| ProSiteProfiles | 608 | 642 | 35 | 11.411 | ||
| TIGRFAM | 610 | 643 | 34 | 4.5E-8 | ||
| Gene3D | 636 | 700 | 65 | 5.7E-9 | ||
| Pfam | 643 | 689 | 47 | 1.1E-7 | ||
| ProSiteProfiles | 643 | 677 | 35 | 11.005 | ||
| TIGRFAM | 646 | 678 | 33 | 9.6E-6 | ||
| Gene3D | 720 | 810 | 91 | 2.8E-20 | ||
| PANTHER | 723 | 889 | 167 | 3.1E-166 | – | |
| Pfam | 741 | 790 | 50 | 1.1E-14 | ||
| ProSiteProfiles | 742 | 776 | 35 | 12.945 | ||
| TIGRFAM | 745 | 778 | 34 | 8.2E-8 | ||
| ProSiteProfiles | 777 | 811 | 35 | 9.142 | ||
| TIGRFAM | 781 | 809 | 29 | 5.6E-6 | ||
| Gene3D | 811 | 895 | 85 | 4.4E-11 | ||
| ProSiteProfiles | 812 | 846 | 35 | 7.421 | ||
| ProSiteProfiles | 847 | 881 | 35 | 10.008 | ||
| TIGRFAM | 849 | 880 | 32 | 1.6E-4 | ||
| Pfam | 849 | 879 | 31 | 6.9E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0328600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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