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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0328700 |
| Transcript ID | LotjaGi2g1v0328700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-binding KH domain protein; TAIR: AT2G22600.1 RNA-binding KH domain-containing protein; Swiss-Prot: sp|Q8W4B1|RCF3_ARATH RNA-binding KH domain-containing protein RCF3; TrEMBL-Plants: tr|V7CJP6|V7CJP6_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0328700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:80410040..80415900) extracted from Lotus japonicus Gifu genome v1.2.
ATTAACTTTGACAATAAAAAAGTCCAACCTCTTTCCTCGTTCCTTCCGTTTTTGTGTCGTTTCACGATTCTCTTCTCTTC TCATCATCACTGACTGATGGAAACAAATCACACAGTAATGGAATCCACCTCTCTCCCAATGCAAGACCCAACTTCCCCCG CCGCCGCCGAACCCGAACAACACCAGCACCAGCACCAGCACCGGTCGCCGCGGCCGTCATCGTCGAAGCGCAACTACAAG TCAAAGCGGCCAGTATTCAAGATTCTCCCAGGTCAGATCGCGTTCCGTCTGGTCTGCCACGCGTCCATAGTCGGCGGCTT AATCGGCAGCTCCGGTTCCATCGTGTCCCAGCTCCGGCGAGAAACCGGTTGCAAAATCCACTGCGAGGACGCCGTGCCCG GCACCGATGACCGGGTCATACTGATAATCGGGTCTCTTTGGCCCCGGAAAGGCGTCGCGTTGGAAGATGGCGAGGTCGAG GTTTCCAACGCGCAGGAAGCTTCGGTTAGGGTTTTTGAGAGGGTTTGGGAGCTTGAAGCTGAGAAAGGGGTTAACAGAAC CATTAACAGTGAAGTTGTCTGTAAATTGCTTGCACACACTTCTCAGATTGGTGCTCTTGTGGGGAAAGGAGGGAAGAACA TTTCCACCATTAGGAATAATACTTGTACGAAAATTAGGGTTTGCCCTTCTCCTCCTTGTGCCGCTAAAGACGAGGAGTTA GTTCTAGTGAGTTTTATCATTATCATTATCATTTTTATTATTGTTACTATGAAAATTTTGGATCAAGGTTTGAGAATAAT ATGTCAAATGTTTTGTTTTTATCAGTGGTCAACGCCTACATGGTATGTTTTTTCTTCCTAGGAAGCTTGCATCTTCAACA CTGCATTGGTTAATTTGAATGAGTATCATATTTCAATGTGTATGGAGGTGAATTTTGAGATTGTAGGCGAGTGGCACGTT TTGCTAATTATAGTAATGTCTATGTTAAGTAATTCAGCTGATTGACTCTGATCTTTCATTTTGCCAAATGGCAATACTGA ATCAGCAGAAATTGTCATTTCATTTTCTTTAATATGGGAACTTGTTGGATTGGCAGATTACTGGTGAAAGTTTGGGTGTA AAGAAAGCGCTGGTTTCTGTATCTCATTGTCTTCAAGATTGTCCACCATTAGCCAAAGCTCCGGTATCTTTGAGCCCGCC AACTCTTAGCTCTTCTGATATGTCATCCCCGGATCCACATGATGAACTTTTTCCTCACCTTAATTCATGGCTACCCTCCA TGGAAGGTTTATCTATAAACGATGCTTCAAGACAGACAACAAACTCTAATGGAAACTTTAATCTTGACTCGAAAGGTGCA GAGCACCAAGTTGTGTTCAGAATCCTTTGCTCTAATAACGTAGCTGGTAGTGTGATTGGCAAAAGAGGGGCTATAGTCAG AGCTCTAGAAAACAAAACAGGTGCTTCTATTATCTTTGCAGCTCCTATAAACAACTTTGCTGAGCGCATTGTCACCGTTT CTGCCATCGAGGTTAGTCATATGAGACTGTTGCTCTGTGACGCTAATGACTTATGCTCATTCATAGTGTTTTCAAGTTTC TTCTGCTCCCTCTTTCTTGGGTGTATGTTAATGAAACGACACATAAACCATGCATTTGATAGATCTGCATGAAAACACAT TTTGCATTCCCATAATTCTTATTGTTGATTTAGATTTGACTTTTGTTCATCCAGAACCTTGGATCTAGTTATTCTCCAGC ACAAGATGCTGTTATTCTGGTCTTCGCTAGAATTATTGAAGATCATATTGGAAAGGGTTTTCTACCGGCATCTAGTGTAG AATCACCTGTAACTGTGAGGCTTTTAGTTGCATCAAGCTCTGTAAATTGCTTGAATGGCAATGAAGGTCAGGTGATTTCG GAATTGAAAGAGTCAACCAGGGCTGATATACAAATTTTGCATGGAGAGCCGGTTCCAACTGCTTCTGATAATGATGTGGT AGTACAGGTATACTGACTTATCTCGTGTAAATCCAGTTAGCCATATTTTTCAATTTTCAATGATGTTATGGGTTTAAATT TAACATCATGAACTTCTATAGTTTTTAAAAGCTTGATTTTGTTTTCATATTCTGATATCCTTTCATGATAAAAAGAGAAC ATATTATTTGTTGCTAAATTTCCAATGTAAAGTTCTTTGATAGTGATATGGAAAACAGTTAAGAACTGTAACTCTCTGGA AGCTCTGCTTGTCTTTCGCAAATGTATTTCTATAAAATATTTAAAATAGAAAAATGTGTATTACATCCAATAAAAGTGGT CCTTATCTGTTAGTTTATTTGTGGAACTTCCTGTGTTTTGCGTGTACTTAGTTTGCAGTATCTTTTTTATCATTGTTCTA TCTGCTTAGTTATTGGTGTAGATTGCAGAGTGACACTGCATAACAAATATCTTCTATTGTTGCACCGAGTTGACTACTGA GGCATTCATGCACTCAGAATAGATTGAGTTGTTATGGCTCCAACAATGTTTTGTCATGTCTCCCAGTCAAATTTGTAATT AGAAAGAGAGATTTAATGCAGATCACTGGTGGGTACAGATGTGTACAAAATGCTCTACATAAAATCACTAGTAGAATCAG GGATAATCTTTACCCAAATGAGGTGCTTGCTGAAGCAAGAACGAATTCCAACTTTCAAGTGAATAAGGATATTGCAGAGG GTAATTTTTCTGCCCATGGAAAATCTGCTTTTCCTTTAGGGAGGTTTATGCGACAGGTATTCTTCACCTCCTTTGAGTTA CTTGTCTTTCAATTTCTTTTGTGTCTGTTTCTGGTTTTTCATAGGGTCTTATGGCAAGAATATTTAAGAGTTTTTATATT TGCAGAATGCTGGGGGGCATGGTGGATCTAACTCAGAGAATGGAGTATTACATACGGATTTAAGTGAGAATTCCGAACGT GGGAGGTCAGTGTAATGCAGCATGGAATACAATTTTTTTTGCTGTCATTCATCCCCTTTTTACATTTTTACAACTATCTT AGTAAAGGTTAGCAGATGATGCCCTTGTCCTTCACTATGGAAGTTTATTTCTTGTCCTGAAGAGATCAATCTTGGTGGTA GTGATCTTAGAATTAAGAGATCAATCTTATGTGCGACTTGAGCCAAATCTGTAGGAAGGGGGGGTTATATTATCAATGAA CTTTTTTCATTTCATTTTTCAGTTGAATAAAAAAAATTAACTGAGTTACATTATCATGTTCTCTTTCAATGGCGTAACTG AAGTTATAAAATAGATTTTAATTTTAATTCCAATTTTGTTAAAATTGTAATTGGTTTAGAATAAAAAATTCCATGTTCGG GCTTTGCAAATAATTAAGGCATTGAAATAGAATTATTAATTCCATTCCAATTCTATTGTTGAGATTTAGAGTTTAAAAAA AAGTTTTGTATTAATTTTTAATTAAAATTATAATAATTAAAAGTTTTAAATATGATAATAATATAACAATTATTATAAAA TGACAATTTAAAATTATTTTTCTGCATTTTTAATCTTGTATAATATTGATTAAACTAATAAATAGATCTTAGGAACAAAA GAAGATTACCACACAGGCACTTAGAAAAATCTGATATTCCTAATAGTTTGATGTTGAATCCACTGACATAACATATTAAC TACGAATAAATAAAATAAATAACACATTGCTTGGTAGACAAATACCTCAATTTAGTAAGACACCTTCCTGCTTCTGGTCT TTTTCTCAACCTTTGTGATGGGAGCAAATTGGTATTGGCTCAGCAAGGGTGAGAATTCTGGATCTATGAGGTGTGAGCAG CATGATGCTGCCAAGAGGCCCGAACAAGTCACTTTAAGGCCAAAGTATCTGAGAGGTTTTGTGTAAGCACCATGTCTTGG GGATGTGGAAAGATAGGGATTTTGTTAGAGTTGGTTAATTAGAAATGGATTGTGATCTGTAGAGTGAGGAATGATTGTAA TTGAGCGCTATTTAACTATTTGTATGGTGAGAACGGTGGAGGAAAGGTAGAGAATAATAGTATAAGATTCAGTCTTCCTG CATTTCATTTTCTTCTCTCTTTTATGTTCTAAACTATCTCCTCCCCTTACTGCCCCATCACAGAGGAAACATGCTTGCTA CTGTGACAAATACTACTGTGGAGATTGTAGTTTCTGAACATGTCTTCAGTTCTGTTTATGGCGAAGATGGCGGCAATGTG GATCGAATCAGACAGGTACTTGGTTATTCCTTTAGAGACTTTCATGAATTATTACTTCGCGGTGAATTGTGGTTGATCTC TTATGCTTTCTTTTGATTATTTTGTTTTGATCAATTTAATTATTTTAGAACTAATATTTTTTCTTAAATAACATAATTTT ATCAAATATCAATAATGTTTGTAAGAATCTTCTAGTGGTTCAGTGGCAAATTCTATTGGTTTTAACTTTTAACCGTAAAA AAAATTAATGTCTGTAAGATATTTGCATTCCTTTTTGTTAAATTTGTCTGCACGTGCCTGAAAGTTAGGTAATTTTGGCT TTGTTTGTACTTGATTTAGATTTAGATGGTTTATTATCTGACATGATTCATGATAGGACATTACCTAGTTGGATAAGGCT CTGGTGGTTGTTGTTGCCTTTATTTGCACTATGGTAAATTATCAAAGTTTAGCTTTGGCATCTTATGTATATTATTATTG GGAAAATAACATTTTTGACCACATCTGAAAATTGTGAGTGTGGATGCGTGTGTATCTACTTAAAGCTTGTGGATATATTC ACACACAAATTCGGGTTCATGTTTTAGTACACTATAGACAGTATGTATCTTGTCCATTAATCCCCAATTGTGTAACTCTT CTACTTCACCAGCTGTTCATCAATTTTATTCAAATTCCTAAGGAAATGTTACCATGAAGTTGGTATTAATATGTTCTAGT GTTATGATGACCAGATTTCAGGTGCAAGTGTAACGGTTTATGATCCTTCTGCCGGAACAAGCCAAGGGAAGGTAGTGATA TCCGGGACACCTGATCAAACCTTTGCAGCACAGAGCTTGCTTCAAGCCTTCATTCAATCTGGACAAGTAAGCTGAGCTGA TGAGAAGTTGCATTCCATTATCACACGTCAAGTCGACAACCTTCACTAATCACGTTGTGAATATGAATTTACTGTTTTCC TGAAAGATGATGCTTTCTTTCTAGGCACTCCAAACATAGATTTTGTTCAATTTATGTCTCTTTTTGTTCTCTCTCTCCCC TTCCCTCACTCTCTCTTAAAAAAGAGAAGGGGTGCAGCTGCCACTAACATCAATCGATAGTTCAATTTCACTTAAAGACC CCATTTATAACAGTTCATCCCCGTTGTGGTTTTTTGCTGTTGATATTCACATATCTATTTTTATCATTAGAGGTAAATTT TGAGTGTTTTCTTTTTCTTTTTCTTTTTTTATTACAATCGATTCAGTTCGCCACCTTGTTATATATGGAAGCATTGTATG ATAATATTATTCAAGGTGATTTGACTCATGGCAAGTTATTAGAAGTAAAAGTGTAAAACATATAAAATATGCATGCTGAT AGATGAACTAATGAGCATTTAAATGTTGCTTATTGTAAAATTGGGGTATATATAGTTTTCATAATGAGCAATAATGGTAT TTCAAGAAAATAAGATGGAGAAAATAATGGAAGAAAGCCATGAGTGTAAACAAACAATGATTAAATTATTGACAAAAGAA AACAATGTTCAAATCATCGAAACATAGCGTGATAGGTTTAACCTTATTCCTAAGGAATTCCAATTTTTTTTATAGATTAT TTTATTAATTTCAAATCACGC
CDS sequence (LotjaGi2g1v0328700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAACAAATCACACAGTAATGGAATCCACCTCTCTCCCAATGCAAGACCCAACTTCCCCCGCCGCCGCCGAACCCGA ACAACACCAGCACCAGCACCAGCACCGGTCGCCGCGGCCGTCATCGTCGAAGCGCAACTACAAGTCAAAGCGGCCAGTAT TCAAGATTCTCCCAGGTCAGATCGCGTTCCGTCTGGTCTGCCACGCGTCCATAGTCGGCGGCTTAATCGGCAGCTCCGGT TCCATCGTGTCCCAGCTCCGGCGAGAAACCGGTTGCAAAATCCACTGCGAGGACGCCGTGCCCGGCACCGATGACCGGGT CATACTGATAATCGGGTCTCTTTGGCCCCGGAAAGGCGTCGCGTTGGAAGATGGCGAGGTCGAGGTTTCCAACGCGCAGG AAGCTTCGGTTAGGGTTTTTGAGAGGGTTTGGGAGCTTGAAGCTGAGAAAGGGGTTAACAGAACCATTAACAGTGAAGTT GTCTGTAAATTGCTTGCACACACTTCTCAGATTGGTGCTCTTGTGGGGAAAGGAGGGAAGAACATTTCCACCATTAGGAA TAATACTTGTACGAAAATTAGGGTTTGCCCTTCTCCTCCTTGTGCCGCTAAAGACGAGGAGTTAGTTCTAATTACTGGTG AAAGTTTGGGTGTAAAGAAAGCGCTGGTTTCTGTATCTCATTGTCTTCAAGATTGTCCACCATTAGCCAAAGCTCCGGTA TCTTTGAGCCCGCCAACTCTTAGCTCTTCTGATATGTCATCCCCGGATCCACATGATGAACTTTTTCCTCACCTTAATTC ATGGCTACCCTCCATGGAAGGTTTATCTATAAACGATGCTTCAAGACAGACAACAAACTCTAATGGAAACTTTAATCTTG ACTCGAAAGGTGCAGAGCACCAAGTTGTGTTCAGAATCCTTTGCTCTAATAACGTAGCTGGTAGTGTGATTGGCAAAAGA GGGGCTATAGTCAGAGCTCTAGAAAACAAAACAGGTGCTTCTATTATCTTTGCAGCTCCTATAAACAACTTTGCTGAGCG CATTGTCACCGTTTCTGCCATCGAGAACCTTGGATCTAGTTATTCTCCAGCACAAGATGCTGTTATTCTGGTCTTCGCTA GAATTATTGAAGATCATATTGGAAAGGGTTTTCTACCGGCATCTAGTGTAGAATCACCTGTAACTGTGAGGCTTTTAGTT GCATCAAGCTCTGTAAATTGCTTGAATGGCAATGAAGGTCAGGTGATTTCGGAATTGAAAGAGTCAACCAGGGCTGATAT ACAAATTTTGCATGGAGAGCCGGTTCCAACTGCTTCTGATAATGATGTGGTAGTACAGATCACTGGTGGGTACAGATGTG TACAAAATGCTCTACATAAAATCACTAGTAGAATCAGGGATAATCTTTACCCAAATGAGGTGCTTGCTGAAGCAAGAACG AATTCCAACTTTCAAGTGAATAAGGATATTGCAGAGGGTAATTTTTCTGCCCATGGAAAATCTGCTTTTCCTTTAGGGAG GTTTATGCGACAGAATGCTGGGGGGCATGGTGGATCTAACTCAGAGAATGGAGTATTACATACGGATTTAAGTGAGAATT CCGAACGTGGGAGAGGAAACATGCTTGCTACTGTGACAAATACTACTGTGGAGATTGTAGTTTCTGAACATGTCTTCAGT TCTGTTTATGGCGAAGATGGCGGCAATGTGGATCGAATCAGACAGATTTCAGGTGCAAGTGTAACGGTTTATGATCCTTC TGCCGGAACAAGCCAAGGGAAGGTAGTGATATCCGGGACACCTGATCAAACCTTTGCAGCACAGAGCTTGCTTCAAGCCT TCATTCAATCTGGACAAGTAAGCTGA
Protein sequence (LotjaGi2g1v0328700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
METNHTVMESTSLPMQDPTSPAAAEPEQHQHQHQHRSPRPSSSKRNYKSKRPVFKILPGQIAFRLVCHASIVGGLIGSSG SIVSQLRRETGCKIHCEDAVPGTDDRVILIIGSLWPRKGVALEDGEVEVSNAQEASVRVFERVWELEAEKGVNRTINSEV VCKLLAHTSQIGALVGKGGKNISTIRNNTCTKIRVCPSPPCAAKDEELVLITGESLGVKKALVSVSHCLQDCPPLAKAPV SLSPPTLSSSDMSSPDPHDELFPHLNSWLPSMEGLSINDASRQTTNSNGNFNLDSKGAEHQVVFRILCSNNVAGSVIGKR GAIVRALENKTGASIIFAAPINNFAERIVTVSAIENLGSSYSPAQDAVILVFARIIEDHIGKGFLPASSVESPVTVRLLV ASSSVNCLNGNEGQVISELKESTRADIQILHGEPVPTASDNDVVVQITGGYRCVQNALHKITSRIRDNLYPNEVLAEART NSNFQVNKDIAEGNFSAHGKSAFPLGRFMRQNAGGHGGSNSENGVLHTDLSENSERGRGNMLATVTNTTVEIVVSEHVFS SVYGEDGGNVDRIRQISGASVTVYDPSAGTSQGKVVISGTPDQTFAAQSLLQAFIQSGQVS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 47 | 47 | - | – | |
| MobiDBLite | 1 | 27 | 27 | - | – | |
| PANTHER | 43 | 477 | 435 | 4.4E-180 | – | |
| PANTHER | 43 | 477 | 435 | 4.4E-180 | – | |
| SUPERFAMILY | 53 | 114 | 62 | 6.28E-12 | ||
| SMART | 59 | 132 | 74 | 0.0061 | ||
| Gene3D | 60 | 235 | 176 | 9.8E-28 | – | |
| ProSiteProfiles | 60 | 127 | 68 | 11.531 | – | |
| CDD | 63 | 114 | 52 | 2.17368E-13 | – | |
| Pfam | 64 | 113 | 50 | 1.3E-8 | ||
| SUPERFAMILY | 155 | 233 | 79 | 4.68E-13 | ||
| SMART | 158 | 230 | 73 | 4.6E-7 | ||
| ProSiteProfiles | 159 | 225 | 67 | 14.194 | – | |
| CDD | 161 | 226 | 66 | 1.16359E-13 | – | |
| Pfam | 163 | 223 | 61 | 1.9E-10 | ||
| SUPERFAMILY | 299 | 381 | 83 | 7.75E-11 | ||
| SMART | 300 | 376 | 77 | 8.4E-7 | ||
| Gene3D | 300 | 469 | 170 | 2.1E-27 | – | |
| ProSiteProfiles | 301 | 368 | 68 | 11.154 | – | |
| CDD | 303 | 372 | 70 | 1.07616E-13 | – | |
| Pfam | 304 | 352 | 49 | 2.3E-8 | ||
| SUPERFAMILY | 388 | 469 | 82 | 3.36E-12 | ||
| SMART | 392 | 466 | 75 | 7.7E-6 | ||
| ProSiteProfiles | 393 | 461 | 69 | 11.72 | – | |
| Pfam | 395 | 462 | 68 | 3.6E-8 | ||
| MobiDBLite | 510 | 535 | 26 | - | – | |
| MobiDBLite | 514 | 528 | 15 | - | – | |
| PANTHER | 522 | 617 | 96 | 4.4E-180 | – | |
| PANTHER | 522 | 617 | 96 | 4.4E-180 | – | |
| Gene3D | 544 | 620 | 77 | 5.5E-15 | ||
| SMART | 546 | 616 | 71 | 1.8E-5 | ||
| ProSiteProfiles | 547 | 611 | 65 | 13.376 | – | |
| SUPERFAMILY | 547 | 617 | 71 | 1.75E-12 | ||
| CDD | 549 | 612 | 64 | 2.09544E-9 | – | |
| Pfam | 549 | 612 | 64 | 2.1E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
Expression pattern of LotjaGi2g1v0328700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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