Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0330000 |
| Transcript ID | LotjaGi2g1v0330000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Lectin-like protein; TAIR: AT5G10530.1 Concanavalin A-like lectin protein kinase family protein; Swiss-Prot: sp|Q39529|LEC2_CLAKE Agglutinin-2; TrEMBL-Plants: tr|K7K1C5|K7K1C5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0330000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:80546716..80547704) extracted from Lotus japonicus Gifu genome v1.2.
CATATATACCATGGCTAACTCCTTCTCTATTTCCCTGCTGACGACCTTGCTCCCTTTCATCTTGCTAATCACCAGAGTCA AATCAGACGCATTTTCCTTCAACTTCCCCCGTTTTGAGTCCGACACAAAAACCATACTCTCCGACGGCGATGCCAACACA ACAGGCGGAGTCCTCCAACTAACCAAAAAGGACCTATACGGCATACCATCTAAGAACAGTTTCGGCCAGACCACATTCTT CGGAGCAGTTCATCTCTCCGACAACAGAACCGGCAAAGTCGCTGACTTCACCACCGAGTTCTCCTTCGTCGTGAACCCCA AGGGTTCAGAGCCTCATGGCGACGGCTTCACCTTCTACATCGCAGGGCTCGACTTCGATTTCCCGGAAGACCCGAAAGAA GGTGGGTTCCTAGGACTTTTCGATCCGAAAAACGCCTTCAACACCTCCGCCAACCAAGTCGTTGCTGTTGAGTTTGATTC CTTCACAAATGTCTGGGACCCCAGCTACCCGAGCAACTCTCCTCACGTGGGAATTGACATCAACTCCATTCGTTCCGTGG CGACTGCACCATGGCCGATTGATCTTGTACCACAGGGTGAGATAGGAAAGGCACTCATCAGCTATCGCAGTGCCTCCAAA GTACTCAGTGTGTTTGTAGTTTATCCAAATAGTCCTGTGAAGATTGAAACTTTTGTAGCTTATGAAGTTGATTTGGGGGC TGTTTTGTCGGATTGGGTCCTGGTTGGTTTCACTGCTGCAACAGGCTCAGTGTCTGAAACTCATGACATTCTTTCATGGG CTTTCAATTCGTTCCTCTAGAGCATATGCATCATACGCAGCTAGCTGGGAAGGAAAATAAGTGTTTGTTGTAATGATGAT AAATTAAAGTTCTTTCAATTATATGTGTTGTTATTGTAATAATTCTGTTCCCCTATTAAAGGCTGAAGTGAACTTATGAA TAATGTATGTTGCATTTACTCTATTAACG
CDS sequence (LotjaGi2g1v0330000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTAACTCCTTCTCTATTTCCCTGCTGACGACCTTGCTCCCTTTCATCTTGCTAATCACCAGAGTCAAATCAGACGC ATTTTCCTTCAACTTCCCCCGTTTTGAGTCCGACACAAAAACCATACTCTCCGACGGCGATGCCAACACAACAGGCGGAG TCCTCCAACTAACCAAAAAGGACCTATACGGCATACCATCTAAGAACAGTTTCGGCCAGACCACATTCTTCGGAGCAGTT CATCTCTCCGACAACAGAACCGGCAAAGTCGCTGACTTCACCACCGAGTTCTCCTTCGTCGTGAACCCCAAGGGTTCAGA GCCTCATGGCGACGGCTTCACCTTCTACATCGCAGGGCTCGACTTCGATTTCCCGGAAGACCCGAAAGAAGGTGGGTTCC TAGGACTTTTCGATCCGAAAAACGCCTTCAACACCTCCGCCAACCAAGTCGTTGCTGTTGAGTTTGATTCCTTCACAAAT GTCTGGGACCCCAGCTACCCGAGCAACTCTCCTCACGTGGGAATTGACATCAACTCCATTCGTTCCGTGGCGACTGCACC ATGGCCGATTGATCTTGTACCACAGGGTGAGATAGGAAAGGCACTCATCAGCTATCGCAGTGCCTCCAAAGTACTCAGTG TGTTTGTAGTTTATCCAAATAGTCCTGTGAAGATTGAAACTTTTGTAGCTTATGAAGTTGATTTGGGGGCTGTTTTGTCG GATTGGGTCCTGGTTGGTTTCACTGCTGCAACAGGCTCAGTGTCTGAAACTCATGACATTCTTTCATGGGCTTTCAATTC GTTCCTCTAG
Protein sequence (LotjaGi2g1v0330000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MANSFSISLLTTLLPFILLITRVKSDAFSFNFPRFESDTKTILSDGDANTTGGVLQLTKKDLYGIPSKNSFGQTTFFGAV HLSDNRTGKVADFTTEFSFVVNPKGSEPHGDGFTFYIAGLDFDFPEDPKEGGFLGLFDPKNAFNTSANQVVAVEFDSFTN VWDPSYPSNSPHVGIDINSIRSVATAPWPIDLVPQGEIGKALISYRSASKVLSVFVVYPNSPVKIETFVAYEVDLGAVLS DWVLVGFTAATGSVSETHDILSWAFNSFL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 25 | 25 | - | – | |
| SignalP_EUK | 1 | 25 | 25 | - | – | |
| Phobius | 1 | 8 | 8 | - | – | |
| PIRSF | 2 | 269 | 268 | 2.0E-67 | ||
| Phobius | 9 | 20 | 12 | - | – | |
| PANTHER | 10 | 269 | 260 | 1.9E-96 | – | |
| PANTHER | 10 | 269 | 260 | 1.9E-96 | – | |
| Gene3D | 18 | 269 | 252 | 8.0E-65 | – | |
| Phobius | 21 | 25 | 5 | - | – | |
| Phobius | 26 | 269 | 244 | - | – | |
| SUPERFAMILY | 27 | 268 | 242 | 5.6E-59 | ||
| CDD | 28 | 269 | 242 | 4.131E-77 | ||
| Pfam | 29 | 267 | 239 | 3.9E-57 | ||
| ProSitePatterns | 151 | 157 | 7 | - | ||
| ProSitePatterns | 239 | 248 | 10 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Carbohydrate binding | Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates. |
Expression pattern of LotjaGi2g1v0330000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…