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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0338400 |
| Transcript ID | LotjaGi2g1v0338400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT3G02330.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9FWA6|PP207_ARATH Pentatricopeptide repeat-containing protein At3g02330; TrEMBL-Plants: tr|I1KI78|I1KI78_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0338400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:81539956..81544285) extracted from Lotus japonicus Gifu genome v1.2.
CGAATCTGGAATAATCGCATCTGAAGGGTGACCGGGTACCGGCGCACACGCATAACAAAGAGTGGAGACTGGAGAATAAC CAAAAACACGAGCCAAGGTCCCACAAAACTCACAACCGAAATAACCAGTATTTCACCAAAACGTGATGAACCAAAGCACA CACCAGCCAAAACCCTAAACCCTAAAAATCGATGCCCCAAATTCGTAGTATCCCAAATGCAGCTCTCAGCTGCAATCAGC GACGTCTTGGCGGTGCTTCCGCCTTCTGGGTCGCTCCGGCTACCGGACCTCCGCCACCTGCATGCTTTCCCTGTTTCTGA TGCCAAAAATTTTCTTTGCCGCCAATTTTTTATTAAAGTAAGCTTCCTATCATATAGTCTTTATTAAATTACAAAACTTT GTTGGTGAATATTCTGAATTTTGTTCCGAAACACATCAGTTAAAGCTTACTATGACCAAAAATATGAAATTTATGTCTTA TTAACTGCATGCTTATGTAAATTAGTTGCTAAGCATATTGTAAAAGTTAGAATTGTTGGTTTCATGCAGAAATTCTCTGG TAAAACATTTGAAAATGATTGCATTACAAAGCATTCTAAAAATGCAAGTACCGACCGAGCACTAGATTTGCTGACCGGAA TGAATAGATTGACGGCGAAGCCATCGAAATCTGTTCTTTGTACTGCGCTTAGTTCTTGCGCGAAAGCCCGGAATTGGCAC TTGGGTCTACAAATCCATGCCTATTTGGTTCGATCCGGATATGAAGATAATTTGTTCCTTAGTAGCGCGCTTGTTGATTT CTATGCAAAATGTTTTGCCATTGTGGATGCTAGGAAGGTATTTCGTGCCATGAAAGTACATGATCAGGTGTCGTGGACTT CGCTTATTGCTGGATTCTCAGCAAACGGACAAGGGAGAGATGCTTTCTTGTTGTTCAAAGAGATGTTAGGCACCCACATT AAGCCCAATTGTTTTACCTTGACGAGTGTCATTAGTGCATGTGTGGGGCAAAAGGATGCCCTTCAACATTGTTCAACTCT TCATGCTCATGTCGTCAAACGGGGATTTCGTACTAGCAATTTTGTGATCTGCTCACTAGTTGATTGTTATGCAAACTGTA AACAGATTGATGATTCTTTATTGTTATTGAATGAAACTAGTGAGAAGGATACTATTGTATACAATTCAATGATCTCTGCA TATTCTCAAAACCTGTGCAGTGGAGATGCGCTGCAACTATTTGTAGAAATGCGGCAAAAAAAATTCAGTCCTACTGATCA TACTTTATGTACCATATTAAATGCTTGCAGCAGCCTCGCGTCACTTATTGAAGGAAGACAAGTGCACTCTCTTGTTATTA AAATGGGTTCTGAAAGGAATGTGTTTGTGGCCAGTGCTCTGGTTGATATGTATTCTAAGGGTGGTGACATTGATGAGGCT CGATTTGTGTTGGATCAGACTTCTGTGAAGAATAATGTGCTGTGGACAACCATGATCATGGGTTATGCTCAAAGTGGGAG AGGGTTAGAGGCTTTGGAGCTTTTTGATCGTTTATTAACTGAGCGAGAGTTAACTCCTGATCATATCTATTTTACTGCTA TCTTAACAGCTTGTAACCATGCAGGATTTCTTGAAAAAGGGGTAGAATACTTCAATATGATGAGAACAAATTATGGGTTG TTTCCTGATATTGATCAATATGCTTGCTTGGTTGATCTTCATGCTAGAAAGGGAAATCTAAGGAAGGCTAGGGATTTAAT GGAAGAAATGCCTTATGATCCAAATTATGTAATCTGGAGTTCCTTCTTGAGCTCTTGTAAGGATTATGGAGATGTAGAGC TTGGAAAGGAGGCTTTTGATCAACTCATTAAGATGGAACCATGTAACGCAGCACCATACTTAACACTAGCACATATCTAT GCATCTGAAGGTTTATGGAATGAAGTAGCTGAAGTCAGAAGCCTTATGCAACAAAGGAAAATAAGAAAACCTGCAGGATG GAGCTGGGTAGAGAATTAACAGTTTCATCATTCACGTAAATCCCCTTTTTACGCTTTGAGATTTTCTTATGACTGTTATG GATGCTTTGCTATAATGTCGCTGATTTTCATTTTCTTCTCTTTCGACATGAATCAACAAATGATGAACAGTCATGTTAGT AGCTTTTCTGTGAATATTGAGTTTTGATTATTCCCATTTTTGTGTATATTCAACCAAGACAACTAAGTTTTCTTGATTGA ATCAAAATTTCCTGTACTAAAATTTGCATGCAAATTGATTGTTTTCTGGTTGCTGGTGATTCATTTTCCCCCCCTTTTAT TTGCCAAATTTAATGCATAGTGCTTATTGGTAGGATAGGATACTTGTAATGAGGGAGTAATTAACTTGTAGTTTATTTGG ACCTTGGCTTCTACCTTTCAGTTCGCAGCCAGTAAGAGACTCTAGAGAGAAGCAGATACAGCTATGGAAAGAGCTTATTT TAGACTAGTGTAAAACCCAGAAGATATTTGTGATCAAGCTTGAAGAAGAATTTGCTCTATTAACAAATCCTATAATTGAA AGTAAGCTCAAAGTCCCTGCTTTAGTGCCAATTTCCATGAAGATTTTTGAATTCACATTAATGCATATAATTACTATTTG CATACATATAGATATAGATGTATGATGTGTGTAGGAGACCTGATAGAGTTTTCAGCTCTACACACATACATATTGGGATT ACTATGTTGGCGATCAGGATCTCCTCAATTGTGAAAAAACTTGACCATGTCAATTTTCACCATCTAACCGTTGATTTAAT TTTCGTTTATTTCTTTAATTATTAAACACACAAAAATCAATGGTGAGATGGTGAAACTTTATTTTTTCCAGTTGAGTATC CATTTCTCTGTAACTAAACTTCTTGTGTCATTCGCGGCATTTAATAATACAAAATAGCTCGTTTGACCATCCTCCTTTGT TTCCCTATTGTTTTCATGAGTTTAGTTTTTAAATGACTACTGTGAATATTTAGTCTTTTCATTTGTTTTGATATTTGTTA AGTTCTCTTTACTATGATATAAATCTACTTTTATATTGTGAATTTGATAGGACAACAAATATAATGCACACTCACCACCC AGCTAGGAACCAAGAGAAATTTTGATTTATTACCTTGACATTGAACACCATGAGAAACTTCACATGGATTATTGCATTTA ATATTGTACTCATGCCTGCCTTAATGTTGTCTTCAGATGATGGGTTGAAGTCTAACATAGCTAAAGCTTGTAAGGGGAAT GGTGGCGGAGTTAATTTTGTACTCATTCCTACCTTGTGCATATCCTTGGGCTTGTTGACAATGGAAAGAAGCCTGCAAGG GTTACATACTTACATGTATATATGAAGTGATGGATAGGGCTAAGGAGGCCATTGGAAGCTTTGGACAACATGCTCCTAAT TTGATGACACTTGCTATTAAAGTGCTTAGCTTGACTTGTAGTTCTTCAAGTTCTGAGGGAAACTGGAGCATTTTTTAGCA TGTAAGTTAATAGTTAATACTTATTACTGTTGAATTTTATGGAGTTTCATAAAATGATTATGCAACTAACATTTATTTTA TTTTATAATATAGATTCATTCGAGGAAGAGGAGTCATCTTGAGCATAATAAGTTACAAGACTTGGTTTATGTTAAATATA ACCAAGTTCTTAAAGAACGATTTTGATTGTTGTGATGCCATTGACCCCATTGTCCTAGATGGTATTGATGATATTAACGA GTAGTTGGTGGGACAAATGGGTGGAGATGGGAAGATGCTGAAAATGATTTGGTTTTTGAGGATGATAACTAAACTTGGGT GAGATGTTGCCAATATGGCAGGTGTTCATGAGCCCTTGACATATATTAGGCGGAAAATTAGAGGGTAAATTGATATTGCC CCTACATCTACTAGGCCTTCATCTTCTAGAGTGAGGGGAAAAGGGAGAGCCAAGGAACTGATGATAGAAGAAGTTGATGA AGAAACAACAAGTGAAAATGAAACTGAATAAGAAGTGGAGGAAGAGATCTACAACTTCAACACAAGTGAAAGTGAAAAAG ATACGGAGGAGCCAGTTCTTCAAGATGAAAATTAATTCTTTCTTATGTAACTACCAGCTAGGAACTCTTATTTCAAGGTT ATGTTTTGTAACTTTAAGCCTAAGAGGCTTGAACTTCCATCAAGACTAATGACTTTTATTGTTATCATGAATGTTATGAA TTTTAGGTAACATTTATCATTTTTTAGTATTTATATGCATATAGTAGTATTAAACTACTAATTATATAAAATTAGGTATG AAAAATCAGT
CDS sequence (LotjaGi2g1v0338400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGCTCTCAGCTGCAATCAGCGACGTCTTGGCGGTGCTTCCGCCTTCTGGGTCGCTCCGGCTACCGGACCTCCGCCA CCTGCATGCTTTCCCTGTTTCTGATGCCAAAAATTTTCTTTGCCGCCAATTTTTTATTAAAAAATTCTCTGGTAAAACAT TTGAAAATGATTGCATTACAAAGCATTCTAAAAATGCAAGTACCGACCGAGCACTAGATTTGCTGACCGGAATGAATAGA TTGACGGCGAAGCCATCGAAATCTGTTCTTTGTACTGCGCTTAGTTCTTGCGCGAAAGCCCGGAATTGGCACTTGGGTCT ACAAATCCATGCCTATTTGGTTCGATCCGGATATGAAGATAATTTGTTCCTTAGTAGCGCGCTTGTTGATTTCTATGCAA AATGTTTTGCCATTGTGGATGCTAGGAAGGTATTTCGTGCCATGAAAGTACATGATCAGGTGTCGTGGACTTCGCTTATT GCTGGATTCTCAGCAAACGGACAAGGGAGAGATGCTTTCTTGTTGTTCAAAGAGATGTTAGGCACCCACATTAAGCCCAA TTGTTTTACCTTGACGAGTGTCATTAGTGCATGTGTGGGGCAAAAGGATGCCCTTCAACATTGTTCAACTCTTCATGCTC ATGTCGTCAAACGGGGATTTCGTACTAGCAATTTTGTGATCTGCTCACTAGTTGATTGTTATGCAAACTGTAAACAGATT GATGATTCTTTATTGTTATTGAATGAAACTAGTGAGAAGGATACTATTGTATACAATTCAATGATCTCTGCATATTCTCA AAACCTGTGCAGTGGAGATGCGCTGCAACTATTTGTAGAAATGCGGCAAAAAAAATTCAGTCCTACTGATCATACTTTAT GTACCATATTAAATGCTTGCAGCAGCCTCGCGTCACTTATTGAAGGAAGACAAGTGCACTCTCTTGTTATTAAAATGGGT TCTGAAAGGAATGTGTTTGTGGCCAGTGCTCTGGTTGATATGTATTCTAAGGGTGGTGACATTGATGAGGCTCGATTTGT GTTGGATCAGACTTCTGTGAAGAATAATGTGCTGTGGACAACCATGATCATGGGTTATGCTCAAAGTGGGAGAGGGTTAG AGGCTTTGGAGCTTTTTGATCGTTTATTAACTGAGCGAGAGTTAACTCCTGATCATATCTATTTTACTGCTATCTTAACA GCTTGTAACCATGCAGGATTTCTTGAAAAAGGGGTAGAATACTTCAATATGATGAGAACAAATTATGGGTTGTTTCCTGA TATTGATCAATATGCTTGCTTGGTTGATCTTCATGCTAGAAAGGGAAATCTAAGGAAGGCTAGGGATTTAATGGAAGAAA TGCCTTATGATCCAAATTATGTAATCTGGAGTTCCTTCTTGAGCTCTTGTAAGGATTATGGAGATGTAGAGCTTGGAAAG GAGGCTTTTGATCAACTCATTAAGATGGAACCATGTAACGCAGCACCATACTTAACACTAGCACATATCTATGCATCTGA AGGTTTATGGAATGAAGTAGCTGAAGTCAGAAGCCTTATGCAACAAAGGAAAATAAGAAAACCTGCAGGATGGAGCTGGG TAGAGAATTAA
Protein sequence (LotjaGi2g1v0338400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQLSAAISDVLAVLPPSGSLRLPDLRHLHAFPVSDAKNFLCRQFFIKKFSGKTFENDCITKHSKNASTDRALDLLTGMNR LTAKPSKSVLCTALSSCAKARNWHLGLQIHAYLVRSGYEDNLFLSSALVDFYAKCFAIVDARKVFRAMKVHDQVSWTSLI AGFSANGQGRDAFLLFKEMLGTHIKPNCFTLTSVISACVGQKDALQHCSTLHAHVVKRGFRTSNFVICSLVDCYANCKQI DDSLLLLNETSEKDTIVYNSMISAYSQNLCSGDALQLFVEMRQKKFSPTDHTLCTILNACSSLASLIEGRQVHSLVIKMG SERNVFVASALVDMYSKGGDIDEARFVLDQTSVKNNVLWTTMIMGYAQSGRGLEALELFDRLLTERELTPDHIYFTAILT ACNHAGFLEKGVEYFNMMRTNYGLFPDIDQYACLVDLHARKGNLRKARDLMEEMPYDPNYVIWSSFLSSCKDYGDVELGK EAFDQLIKMEPCNAAPYLTLAHIYASEGLWNEVAEVRSLMQQRKIRKPAGWSWVEN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 21 | 21 | - | – | |
| Phobius | 1 | 2 | 2 | - | – | |
| Phobius | 3 | 14 | 12 | - | – | |
| Phobius | 15 | 21 | 7 | - | – | |
| Phobius | 22 | 536 | 515 | - | – | |
| Gene3D | 56 | 203 | 148 | 1.7E-26 | ||
| PANTHER | 70 | 199 | 130 | 4.8E-92 | – | |
| ProSiteProfiles | 86 | 120 | 35 | 6.445 | ||
| ProSiteProfiles | 121 | 151 | 31 | 5.788 | ||
| Pfam | 152 | 198 | 47 | 7.4E-10 | ||
| ProSiteProfiles | 152 | 186 | 35 | 10.797 | ||
| TIGRFAM | 154 | 188 | 35 | 5.0E-6 | ||
| ProSiteProfiles | 187 | 222 | 36 | 6.138 | ||
| Gene3D | 204 | 307 | 104 | 8.5E-18 | ||
| PANTHER | 205 | 314 | 110 | 4.8E-92 | – | |
| ProSiteProfiles | 223 | 253 | 31 | 5.864 | ||
| Pfam | 253 | 301 | 49 | 7.8E-11 | ||
| ProSiteProfiles | 254 | 288 | 35 | 11.181 | ||
| TIGRFAM | 256 | 289 | 34 | 1.2E-6 | ||
| ProSiteProfiles | 289 | 323 | 35 | 5.546 | ||
| SUPERFAMILY | 302 | 494 | 193 | 4.74E-9 | ||
| PANTHER | 308 | 520 | 213 | 4.8E-92 | – | |
| Gene3D | 308 | 406 | 99 | 1.1E-16 | ||
| ProSiteProfiles | 324 | 354 | 31 | 6.873 | ||
| Pfam | 329 | 349 | 21 | 1.3 | ||
| ProSiteProfiles | 355 | 390 | 36 | 9.887 | ||
| TIGRFAM | 357 | 391 | 35 | 1.6E-4 | ||
| Pfam | 357 | 383 | 27 | 1.7E-6 | ||
| ProSiteProfiles | 391 | 421 | 31 | 6.96 | ||
| Pfam | 395 | 420 | 26 | 0.08 | ||
| Gene3D | 420 | 535 | 116 | 1.9E-13 | ||
| ProSiteProfiles | 427 | 457 | 31 | 7.596 | ||
| Pfam | 432 | 454 | 23 | 0.057 | ||
| ProSiteProfiles | 459 | 489 | 31 | 6.511 | ||
| ProSiteProfiles | 493 | 527 | 35 | 7.454 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0338400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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